Basic Information

Insect: Cataglyphis niger
Gene Symbol: -
Assembly: GCA_004329405.1
Location: SJPC01003737.1:12332-18912[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00017 0.12 14.8 4.1 1 23 202 224 202 224 0.97

2 11 5.1e-06 0.0036 19.5 1.5 1 23 230 252 230 252 0.98

3 11 0.0013 0.92 11.9 3.8 1 23 258 281 258 281 0.95

4 11 0.0051 3.5 10.1 5.2 1 21 287 307 287 309 0.95

5 11 5.1e-05 0.036 16.4 1.9 1 23 315 337 315 337 0.99

6 11 2.9e-05 0.02 17.1 0.8 1 23 343 365 343 365 0.98

7 11 0.00027 0.18 14.1 0.8 1 23 373 396 373 396 0.97

8 11 1.4e-05 0.0097 18.2 2.6 2 23 403 424 402 424 0.97

9 11 5.1e-05 0.036 16.4 0.3 1 23 430 452 430 452 0.99

10 11 0.0014 0.95 11.9 7.3 1 19 458 476 458 481 0.91

11 11 4.5e-08 3.1e-05 26.0 1.3 1 23 495 517 495 517 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00017	0.12	14.8	4.1	1	23	202	224	202	224	0.97
2	11	5.1e-06	0.0036	19.5	1.5	1	23	230	252	230	252	0.98
3	11	0.0013	0.92	11.9	3.8	1	23	258	281	258	281	0.95
4	11	0.0051	3.5	10.1	5.2	1	21	287	307	287	309	0.95
5	11	5.1e-05	0.036	16.4	1.9	1	23	315	337	315	337	0.99
6	11	2.9e-05	0.02	17.1	0.8	1	23	343	365	343	365	0.98
7	11	0.00027	0.18	14.1	0.8	1	23	373	396	373	396	0.97
8	11	1.4e-05	0.0097	18.2	2.6	2	23	403	424	402	424	0.97
9	11	5.1e-05	0.036	16.4	0.3	1	23	430	452	430	452	0.99
10	11	0.0014	0.95	11.9	7.3	1	19	458	476	458	481	0.91
11	11	4.5e-08	3.1e-05	26.0	1.3	1	23	495	517	495	517	0.98

Sequence Information

Coding Sequence: ATGACGAGTAACGTAGCAATCATAAAATTAGAAGAAGGACAAGAATCTGTCACAGAGATACAAGAATCTGTCACAGAGATACAAGAATCTGACACAGAGATACAAGAATTTGGAAGATACAAGAAATTGGAAGAGGGACAAGAATCTGTCACAGAGATACAAGAATCTGTCACAGAGATACAAGAATCTGTTACAGAGATACAAACTTACTtagaaacatttaataaagaaatagaagGAGGGCAAGGAGAACAACTGCATGTGCAATtacaACAAGTGGAGGATTTATATCAAACTGTCACGATTGTACCATCTGACACAAATCCTGGAGAAGTTAGTTACATTCTGATAGTTCAGCAACCTGAAtccgaagaaaaagaaagtgaaCCTGTGGAAAATGAAACAATAGCAGCAACAGCTACAGCAGCAACAGTAGAAGGAGAGGAGGCAGAAGGAGAGGAGGCAGAAGGTGAACAAGATCTCACTGTATATGATTTTGAGGACAATGAAGATAATGAGGCTCCAGTGGAATCCGAGGCGGAAGATGATAAGactaaaattgttaaatttcttCCTAAAAAATCTCAAACTGTAACGCAGGCTCATATGTGTAATTACTGCAACTACACCAGCCCAAAACGgtATCTCTTATCACGACACATGAAATCCCACTCTGAAGAAAGACCACATAAATGTAGCGTTTGTGAGAGAGGATTTAAAACTTTGGCTTCGCTTCAGAATCATGTCAATACTCATACTGGGACCAAGCCTCatcattgcaaattttgtgaGAGTGCATTTACGACTTCtggtGAACTTGTAAGACATGTTCGGTACAGACATACCCATGAAAAACCGCATAAATGTCACGAATGCGATTATGCATCTGTTGAGTTATCAAAACTGAAAAGACATATTAGATGTCACACAGGCGAACGACCTTATCAGtgTCCACACTGTACATATGCAAGTCcagatacatttaaattgaaacGCCATCTTCGCATTCACACTGGAGAAAAACCATATGAATGTGATTTTTGTCAAGCAAGATTTACTCAGTCTAACAGTTTAAAAgcacataaattaatacataatgTAGGCGATAAACCAGTATTTCAGTGCGAATTATGTCCAGCTACATGTGGCAGAAAAACGGATCTCAGGATCCATGTGCAAAAATTACATACTTCAGACAAACCTTTAAAATGTAAACGTTGTGGAAAAACATTCCCGGATAgATATAGTTATAAGTTGCATAGCAAAACTCATGAAGGAGAGAAATGTTACAAGTGCGATTTATGTCCATACGCGTCTATATCGGCGCGTCATTTGGAGAGTCACATGCTCATTCATACCGATCAGAAGCCGTACCAATGTGATCATTGCTTTCAATCATTTAGGCAAAAACAGTTACTCAAACGGCACTGCAATCTTTATCATAATCCTTCCTATGTTCCTCCACCACCGCAAGAAAAAACGCACCAATGTCCCGAATGTGAAAGAGCATTTAGACATAAAGGTAATCTTATTCGACATATGGCTGTTCATGATCCAGAATCATCTTTACAAGAGAAACAACAGGCTTTAAAAATTGGCAGGcagaaaaagatacaaatcaTCGACGGTCAACGTGTTGAAGTAATGACAGGttatgaagatgaagaagaggaagaagatgaagacgaCATGATGGCAGTCCAAGGCAGTGATGGTCAACAATATGTCGTTCTTGAAGTCATCCAGTTAGCTGACAATCAAGGAACAGATCAGatggCTGTAGTTGCAAATGAGGATGGAGAACTAGTAATGCAAGATCCTTTAAGTCAAGAAAGTATAGTAGCAGAAACGGGCGAAGAAGTTGATGGAGTAGAAGAAGATATAGAAATGCAAGATTTAAAGATAGAATCCATTACCTCCAGTCCACCTAAATCTTCAACACAGAACACACAAAGTgattcaaaattgcaaaaggaAATGGAAACTTGTTTTGGGTTTGATGAAgaagaagaagaagaagaagaggaagaagaagaaagcagtAATATAAACATGTTACAGACAATTTcgtaa
Protein Sequence: MTSNVAIIKLEEGQESVTEIQESVTEIQESDTEIQEFGRYKKLEEGQESVTEIQESVTEIQESVTEIQTYLETFNKEIEGGQGEQLHVQLQQVEDLYQTVTIVPSDTNPGEVSYILIVQQPESEEKESEPVENETIAATATAATVEGEEAEGEEAEGEQDLTVYDFEDNEDNEAPVESEAEDDKTKIVKFLPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCESAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDFCQARFTQSNSLKAHKLIHNVGDKPVFQCELCPATCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERAFRHKGNLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGYEDEEEEEDEDDMMAVQGSDGQQYVVLEVIQLADNQGTDQMAVVANEDGELVMQDPLSQESIVAETGEEVDGVEEDIEMQDLKIESITSSPPKSSTQNTQSDSKLQKEMETCFGFDEEEEEEEEEEEESSNINMLQTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730251;
90% Identity: -
80% Identity: -