Basic Information

Insect: Cataglyphis niger
Gene Symbol: -
Assembly: GCA_004329405.1
Location: SJPC01001795.1:11711-15482[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.006 4.1 9.9 2.7 1 23 45 67 45 67 0.99

2 13 5.3e-05 0.037 16.3 3.8 1 23 253 275 253 275 0.99

3 13 8.7e-08 6.1e-05 25.1 0.4 1 23 281 303 281 303 0.98

4 13 0.0021 1.5 11.3 1.9 1 23 328 351 328 351 0.96

5 13 0.09 62 6.2 0.6 1 23 357 381 357 381 0.95

6 13 1.1e-05 0.0075 18.5 0.8 1 23 386 408 386 408 0.98

7 13 0.00051 0.35 13.3 3.8 1 23 420 444 420 444 0.92

8 13 0.0016 1.1 11.7 2.6 1 23 446 468 446 468 0.97

9 13 2.9e-06 0.002 20.3 0.2 1 23 474 496 474 496 0.96

10 13 2.6e-06 0.0018 20.5 1.4 1 23 502 524 502 524 0.98

11 13 0.0075 5.2 9.6 0.3 5 23 539 557 530 557 0.79

12 13 0.0046 3.2 10.2 7.2 1 23 563 586 563 586 0.94

13 13 0.00048 0.33 13.3 2.5 2 19 589 606 588 609 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.006	4.1	9.9	2.7	1	23	45	67	45	67	0.99
2	13	5.3e-05	0.037	16.3	3.8	1	23	253	275	253	275	0.99
3	13	8.7e-08	6.1e-05	25.1	0.4	1	23	281	303	281	303	0.98
4	13	0.0021	1.5	11.3	1.9	1	23	328	351	328	351	0.96
5	13	0.09	62	6.2	0.6	1	23	357	381	357	381	0.95
6	13	1.1e-05	0.0075	18.5	0.8	1	23	386	408	386	408	0.98
7	13	0.00051	0.35	13.3	3.8	1	23	420	444	420	444	0.92
8	13	0.0016	1.1	11.7	2.6	1	23	446	468	446	468	0.97
9	13	2.9e-06	0.002	20.3	0.2	1	23	474	496	474	496	0.96
10	13	2.6e-06	0.0018	20.5	1.4	1	23	502	524	502	524	0.98
11	13	0.0075	5.2	9.6	0.3	5	23	539	557	530	557	0.79
12	13	0.0046	3.2	10.2	7.2	1	23	563	586	563	586	0.94
13	13	0.00048	0.33	13.3	2.5	2	19	589	606	588	609	0.94

Sequence Information

Coding Sequence: ATGGCGCATTCTATCCTCGACGCTTTGACAGATGTCTCATTAGACGGCTCCTCTGTACAATCCTTATTGGAGTCACAGACGTTGATAGCCGAAGTTGAACAGTCagcgATCGATCAGGATGAGGAAGATATATTCCAATGTGGCAAGTGTAAGAGCCAGTTTACGTCACTGCAGATGTTTGTGCTCCACAAGAGAACACATCAAAAGACACAGGAGCAGACAGTGGACCTGACTCAATTCCTGACAAACGATGAAAGTCATGTGATGCATGTGGAAGATGCCACTCCAGATGAATCACAGTATAATTCGCAGGAAACTTTTCAGCTTGGAGAACCTATTATTCTTGAAGAAGCAGATATGCTATTTAGTGTGGACCAAGAGGCTGCCAATTACTTCACAACAGATTCCACATTCAGTGTGCCAATCATTTTGAGCACAGAAAGTCTGAATCCTTTTGCTGAAGCGACAAGGGATGATACAAACGAAGTGCCGACAATACAATTGCAGAACAATGTCAACCCACAGGAGGATGCCTCAAGCCAGTCTGAACAACCTAGTGCTTTGTTGATGGATAGCGAACCATCGGTAGTGGACGAACCGCTTGTGGCAGATGAGCCACCATTGGATGGAAATGAACCTTCCATCGAAGATAAAATATCCATTGAGGAGAAAATATCCATCGAGGACGAAATATCTATTCAAGATAATTTGCCCGATGAATTAGAGAATGACAGCAATCAAACACAGAACTTGAAGTATAAGTGTAGCTATTGCAACAAGCAATTTGCAAAGAAATTCTATTGGCAGCAGCATGAACGTTCTCACACTGGAGAGAAGCCTTACCAATGTGTAGTGTGTGGTCGAGCATTTGCACAGAAGTCAAATGTGAAGAAACATATGTCTTCGCACAAAGTCTGGCCTGGCACTGCCATTCATTCGTTACCACCAGaaGCGCCTCCAGACGGAAGTATCGACCGCACTTATCACTGCCAATTTTGCAAGGAAACATTCGACTCATACAAGGCTCTGAAAGGCCATCTCATTGTCTCACATCTAGCGTTAAAAGTGTACAAATGTGTGCAGAGCAGCTGCAGCATGATGTTCTCGGAACTGGAAGAGTTTCTGGAGCACACGCGTAATCACAAAGGCTCGGAGTATCGCTGTCACGTATGTGGCGATGTATTTAGTACCCTCTCCGATCTCGGTCGCCATCAGTACGTTCACTCCGTCCAGAAGCAAAAGACTACAGAGAAGTACTATTGCTGCTCGATCTGCAAATCGTCGTTCTCAAATCTCGAGGCGCTTCAACACCATCAAGAAACTACTACGCACGATTATGCATGCCTACACTGTGGTAAGAGCTTCCTCATCGAGAGATTTTTACGTCGCCATCTCAAGACCCATTCAGCGTCGGCGAAATTCGCCTGCGAGGATTGCGGCAAAGCTTTCAAAACCGAGCAGTACCTGGCCAATCATAAGCTTATTCACAGCGAAGATACACCCTTTACCTGTCcgCATTGCCCGGCCAGATTCAAGCGAAAAGATCGTTTGGGACGGCACATGCTGATCCATGACCTGACGAAAAGGCTCAAGTGTCCATTTCGTGGCTATCTGGGCTGCATGAGCGAGTTCTCGCGGGCAGATAAGCTCAAACGGCACCTGTTGACGCACAGCAACGTCAAACGATTCAGTTGCAGCCATTGTAACCGCAATTTTCATCGGGCTCAGGCCCTTAAGCACCATGAAATGAATAAGCACAGTCTTAAGTGCGACATTTGCTCTCATACATTTAAGACTAAAGAGCAGCTGATTACCCATAATTGTGAACAATTGAGCGAGGCTAAAAAGCACACAAGCTCACAGCTACCAAAAAAAGCATCCGGATCGTTTAAGCCAAGGAAACCAACCCCAAAGAAACAAACATTATCAAAGACTGCAGTTCCGCTTgccgataaagaaaaattggaaaaatgtaaagctgatgaaatagaaaaaaaaAATATCTCTGAAACATTCAAGTCTGATGTTTTCGATgaagaattttgcaaaaaaacggAGAACATTCTTTCCGTCTCAAAAATCGAACCGACTGGCAGTGAATTAAACGAGCGGTCCGATTCGCCGGTTATAACTTTCGAGGAATTTAAGCACAAGATAGAGTTCCACTCGTCTGACGCGGGCgagtaa
Protein Sequence: MAHSILDALTDVSLDGSSVQSLLESQTLIAEVEQSAIDQDEEDIFQCGKCKSQFTSLQMFVLHKRTHQKTQEQTVDLTQFLTNDESHVMHVEDATPDESQYNSQETFQLGEPIILEEADMLFSVDQEAANYFTTDSTFSVPIILSTESLNPFAEATRDDTNEVPTIQLQNNVNPQEDASSQSEQPSALLMDSEPSVVDEPLVADEPPLDGNEPSIEDKISIEEKISIEDEISIQDNLPDELENDSNQTQNLKYKCSYCNKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKETFDSYKALKGHLIVSHLALKVYKCVQSSCSMMFSELEEFLEHTRNHKGSEYRCHVCGDVFSTLSDLGRHQYVHSVQKQKTTEKYYCCSICKSSFSNLEALQHHQETTTHDYACLHCGKSFLIERFLRRHLKTHSASAKFACEDCGKAFKTEQYLANHKLIHSEDTPFTCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRGYLGCMSEFSRADKLKRHLLTHSNVKRFSCSHCNRNFHRAQALKHHEMNKHSLKCDICSHTFKTKEQLITHNCEQLSEAKKHTSSQLPKKASGSFKPRKPTPKKQTLSKTAVPLADKEKLEKCKADEIEKKNISETFKSDVFDEEFCKKTENILSVSKIEPTGSELNERSDSPVITFEEFKHKIEFHSSDAGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110004;
90% Identity: iTF_00729529;
80% Identity: -