Cnig012469.1
Basic Information
- Insect
- Cataglyphis niger
- Gene Symbol
- bab1
- Assembly
- GCA_004329405.1
- Location
- SJPC01011452.1:2625-3410[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.4 3.5e+03 -0.3 0.1 33 42 54 63 46 64 0.88 2 2 1.6e-09 1.4e-05 26.6 0.0 1 25 105 129 105 129 0.93
Sequence Information
- Coding Sequence
- ATGCTCACCGCGCGAACGCGATTGTCTCTTGTTAAGCGGCCTTACAACGCCAGCTCTGTTAACGATTGTGACTCCGCCCACGCTCGAGGTATAAACGTGCTGGATGCACCTGCGTGCATCGAGACCGACGCTTATCGATTCGACGTTAAGATTGCACATTTGCGGAATCGCAAACGGCGGCGATATTCGCCCCACCCCTCTCCAGACAGCTACCAGTACCAGCTCCAATCAATGTGGCAAAAGTGCTGGAACACCAATCAGAGTCTGGTGCACAATCTGCGCTTCCGGGAACGCGGACCCCTCAAGTCCTGGCGGCCGGAAACCATGGCGGAGGCGATCTTCAGCGTCCTGAAGGAAGGGCTTTCCCTCAGCCAAGCGGCAAGGTACGTTTGGccatga
- Protein Sequence
- MLTARTRLSLVKRPYNASSVNDCDSAHARGINVLDAPACIETDAYRFDVKIAHLRNRKRRRYSPHPSPDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARYVWP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -