Cnig066036.1
Basic Information
- Insect
- Cataglyphis niger
- Gene Symbol
- -
- Assembly
- GCA_004329405.1
- Location
- SJPC01006362.1:2685-9968[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.9e-12 6e-08 34.2 0.0 1 39 589 628 589 632 0.90 2 4 2.5e-12 2.1e-08 35.6 0.1 2 39 644 681 643 684 0.94 3 4 5.7e-19 4.9e-15 56.8 0.0 1 45 698 743 698 743 0.97 4 4 1e-18 8.9e-15 56.0 0.1 1 42 750 792 750 793 0.97
Sequence Information
- Coding Sequence
- ATGCTCATAGATAGAGAATACGTGATTCTCCTTGCCAAAAGTCGCACCGTTTTCGTCGTTATCGTTATCATCGGGGACGACTACCCCGTTCGTTCTAACGGAGACGCTCGATTATCGCGTACCTCGCGCGACCCGACTAGCGCCATCAAACTCCCGAGCCGCCGAGATCGAAGATCCCGCGGACGTTTTGGGGAGGCCGTGCAAACGCCCGGCCGTAACGAGCCGGCGAACGGGCGAAGGCACGAGACAGAcggaacgagagaaagagggacaGGCGGGCATATACGCGTGTGGCAACGCTTGGAAGTCATTGGTGTCGATGCCGGTTGGGGGTGGTCGATACGGCCCTCGGGCCACGAAAGCCGCGTAGGAGGCCTCCCCATTCTTCCTGCAGGCACCGATCCGCCATCTCTCCCCTCTGTTCGCTATCCACGCAACGCGTTCCAGTCGCTACCGACACCCCTCGGTGCAACCTATCTACCTCTGTCCCCCGgtcctctttctccttccatctcttttctctccctcctctACGGTGCCACTCTCACGCCGCCGGCAACCGCGCAGACCCCGCCTAATCGTGCCACCCCCGGTTTGATTAAAGAACAGAGAGGCTCGGCTTCGGCGCGAGAGGATCCTTCATACGAGTTGACCACGTGGACGTCCGGAGAAGCCACGCGACTTGACGGCTTTGCCACGCGGAGGTGGCGTCCATCATCCTCCTTCCCTTCTCGCCGAAATACTCGGCTGGATCTCGCCGGCGTTGATTTTCAGCAGCGACAGTTCGTGGATGGACGGACGATGCTCGATGTCGCCTCCTCCGCCGTCGACATGAAATTGCACCGCCGCCGGGCGGAACGAGATGCCGGCAGACGACAAGCTCGCGCGAGAAATATGCAAATCCAATCGGACCGGACCCCCGCGTGGTCCTTCGTCCGCTTCTCACAAAGCGTCGCTTTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGCCTGAGTTCGCCGCCGAGGGAATCCGGCACCCCGAGATTGAACTACACGAAGCTGAAGAAGCATCATCAACGCGGCCCACGTTCGAGCCGCGCGCAACCGATCCAAGACACTACGAGCGTTACAAAGACGAAGAGGCGATTACAATCAACGATTATAGCCTCGATAACAAAGAGAATCACCGGGATTGGCAAGCCGAAGATGAAGAGTGCACGGagacagcaacagcagcagtagcacTGGAAACTTGCCAacgtaacaacaacaacaacaacggtAACGGCGCgagtaacaacaacaacgGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCATCATCCTGATCCCGGGGAGGTTGATTTACCCCCCGAAACCCAACCCACTCCACCCAGCGCCACCTTGGTCGGCACTACCATCACTCATCTAAGGGATCCGGATCATCATTCTACAGAGATTCAGAACTGCGATAGCGAGATTAAGatcaaatttgaaacattGCACACGATGGACTCTTCGGACACGATCGACATAGACAGCCACATGTCAGATCGGGCTAGCGTGAGCTCGAAAAATGCCGCCGATAGTGACaacatgatgatgataacaCCAGAGCTACTTGGACTGATGCCATCGGGAAGCTCCGGCCAGTCGGACTCAGGCGATAACAATTCGAGGGGGCATTCTGGACAGTCCAGCTCGCATCATCACGGCTCGAAATCGTGGACGCAGGAGGACATGGACGCCGCTCTAGATGCATTGAGGAATCATAATATGAGTCTGACAAAAGCATCGGcAACGTTTAATATTCCCTCGACGACTCTATGGCAACGGGCGCATCGACTGGGTATCGACACGCCCAAAAAGGATGGTCCCACGAAATCTTGGAGTGACGAAAGCTTAAACAATGCTTTAGAAGCTTTACGTACCGGCACCATTTCGGCTAATAAAGCATCTAAGGCATTCGGCATACCTTCTAGCACATTGTATAAGATCGCGAGGAGGGAAGGCATCAGGCTGGCCGCACCGTTCAATGCAAGTCCCACGACGTGGACGCCTGCCGATCTGGATCGCGCTTTAGAAGCGATAAGATCTGGTCAAACGTCCGTTCAGAGAGCGTCCACAGAATTCGGCATACCTACGGGGACATTGTATGGAAGATGTAAACGTGAAGGAATCGAACTTAGCAGGAGCAATCCCACGCCATGGAGCGAGGATGCCATGACTGAAGCTCTCGAGGCTGTCAGATTAGGACACATGAGCATCAATCAAGCAGCAATCCATTATAATCTGCCGTATTCGTCATTGTACGGGCGTTTCAAGAGAGGCAAATACGAAGAACCCGTCGTCGGCGACATCTCGCAGGATGGCAGCAGTCCACATTTTCATCAGAGTCCCAATCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MLIDREYVILLAKSRTVFVVIVIIGDDYPVRSNGDARLSRTSRDPTSAIKLPSRRDRRSRGRFGEAVQTPGRNEPANGRRHETDGTRERGTGGHIRVWQRLEVIGVDAGWGWSIRPSGHESRVGGLPILPAGTDPPSLPSVRYPRNAFQSLPTPLGATYLPLSPGPLSPSISFLSLLYGATLTPPATAQTPPNRATPGLIKEQRGSASAREDPSYELTTWTSGEATRLDGFATRRWRPSSSFPSRRNTRLDLAGVDFQQRQFVDGRTMLDVASSAVDMKLHRRRAERDAGRRQARARNMQIQSDRTPAWSFVRFSQSVAFEDGRPAEDQGPVRGAGEQGRSATREPEFAAEGIRHPEIELHEAEEASSTRPTFEPRATDPRHYERYKDEEAITINDYSLDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNGNGASNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSEIKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGDNNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHNMSLTKASATFNIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGSSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -