Basic Information

Insect: Cataglyphis hispanica
Gene Symbol: -
Assembly: GCA_004195275.1
Location: SGAY01003705.1:5299-8799[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.023 2.9 9.3 0.6 6 23 264 281 261 281 0.92

2 12 0.53 68 4.9 0.2 1 21 286 306 286 309 0.82

3 12 0.00015 0.019 16.1 2.0 3 23 323 344 322 344 0.96

4 12 0.0047 0.61 11.4 0.5 3 23 357 377 357 377 0.98

5 12 9.3e-08 1.2e-05 26.2 1.5 2 23 418 439 417 439 0.97

6 12 0.0089 1.1 10.5 0.4 1 23 444 467 444 467 0.89

7 12 0.97 1.2e+02 4.1 1.6 2 23 537 558 537 558 0.96

8 12 0.0002 0.026 15.7 4.8 1 19 566 584 566 588 0.94

9 12 0.042 5.3 8.4 3.4 1 22 624 645 624 645 0.95

10 12 5e-06 0.00064 20.8 1.6 1 23 670 692 670 692 0.99

11 12 0.037 4.8 8.6 0.1 1 23 757 780 757 780 0.97

12 12 6.4e-07 8.2e-05 23.6 5.9 1 23 785 808 785 808 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.023	2.9	9.3	0.6	6	23	264	281	261	281	0.92
2	12	0.53	68	4.9	0.2	1	21	286	306	286	309	0.82
3	12	0.00015	0.019	16.1	2.0	3	23	323	344	322	344	0.96
4	12	0.0047	0.61	11.4	0.5	3	23	357	377	357	377	0.98
5	12	9.3e-08	1.2e-05	26.2	1.5	2	23	418	439	417	439	0.97
6	12	0.0089	1.1	10.5	0.4	1	23	444	467	444	467	0.89
7	12	0.97	1.2e+02	4.1	1.6	2	23	537	558	537	558	0.96
8	12	0.0002	0.026	15.7	4.8	1	19	566	584	566	588	0.94
9	12	0.042	5.3	8.4	3.4	1	22	624	645	624	645	0.95
10	12	5e-06	0.00064	20.8	1.6	1	23	670	692	670	692	0.99
11	12	0.037	4.8	8.6	0.1	1	23	757	780	757	780	0.97
12	12	6.4e-07	8.2e-05	23.6	5.9	1	23	785	808	785	808	0.98

Sequence Information

Coding Sequence: ATGGATAACACGATCAACAAGTGGGACAATGTCTGCAGACTATGCTCGGAAGAGAGGAACGAGATGTTGCCCATCTTCGGCGGCGAGGGTCTGCAGCGCAGGATGGCTCAGAAGCTGCGCGCCTGCCTGCCCGTGTTGGTGTACAAAACCGATCCCTTGCCGAAACAAATTTGTCAGTTTTGCGCGGCGAGGCTGGATGATGCGTATGAGTTCAGAGAGTATTGCCTGAACgtctacaagaatatgcacgCCATGTTATTCAAATGTAAACAGATAGATTCTGTGCAAATATTCCTCGACGCGATGAAAAACTCGCCGGATCCATGTCAGGCACAACTCTGCAAGGAGAGGTCTAGAGCACCACCGCCATTGGTTCCTCTATCAATCGGTCTACCCTTTGATGATTCGGTAACTCCAATCAATCAAATTAGCCAAGatcaattgcaaaatttctgCATGGAAACCTTATCTGAACTACCTTGCGAAGTAGAGATCAAAGAAATGAATGTAGATCCAATTTTGGATACTGGAACTATGATCTGTGAGCCATTGAAGAAAAAACGCAAATTATCAGAAATGTTTGACACAAATGTGCAAACAAAGATGGATATTGTTTCTATATTTGACACGGAAGAAGAAAACTCAGTTTTCAAGGTAGATTATCaaacgaaaaaagaagagaaacgaACCAGTATTTTGGAACAAGTTCTGACTGGTAATTTGACGATGAATAATCATCAGAAACTACAACCTAGAGCAAGATTAACTTCTGAATGGTGGTGTGCaccttgtaataattattatagaaCAAAAGACAGTTTAATGAAACACATGCAATTGCACTGCCCGCGTATATATACTTGTAGAAAATGTTCCTTATCTTTCGAATCTGTAGAAATTTTGGCAAAGCATGAAgctaataatcatttaaaagtCAAATTGGATTTTACAGAAAGCTTAAAAGATTGTCATAAATGTGATCGGCAGTTCATAAGCTGGGAAATGTTGAGACAACATAGATTACGCGATCATTTAGCCGAATTGACTGAGATTGGAACTAACACATGGTGTTCATTGTGCAATAGGTTTTTTCCTACCGTAGAAACTTATCAGAATCATATTCAATTACATCAAGcaaattcattaatatcgcaaaaacTACCTTTCGCAGAATCTGCGATATCAAAGACAGCAGAACGACCGAgggaaattaaaagagaagagCAATTCTACGAAAACGTAAAGTCTCTCACATGTCCCACCTGTGGAAAAgTTTGTACTCAACAAAGTGCATTATCAAATCATATGCGCACTCACGAACCGAAGAGACATAAATGCGACATTTGCGGTCGGTCATTCGGGCTTTTTATACGTCTGGCTGCACACAGAGTAACTGAGCATAATGTGCAGCCAACAATGTTACCAGTTTTATCAGCAGTTGAGCAGGAGGAAGCATTAAATGCTGAAAGAGAAGCAAGGGAAGCAAGAGAAGCTAAAACTCGTGGTGCtaagaataaattctattcCGAGatgaTGGAGAAAAACAATGTTCTGGTAGATGACGAATCTTCAACAAAACGTAATTCTAGTGGCCTCAAAAACGTTGCAAGATGCGGCATTTGTCTACAATGGTTCAGCGATCATACAACAATGCTAACACATCTCCAAACACATTCGGACAATTcccataaaaatttcatatgtcacatatgtaaaaaatcatttaaagaaCAATCACAATTGCTTAGGCATGAGACTTGTCATAAACGTCTATCACTCGATAATGCTCCGCTATATACATCTGCGGTTTGCAACAAATCGTCGTCTATGGATAAATCGCAACAAAAAATGCACACAGTAGATAGAACTTATCACTgcgcaaaatgtaataaaatttttttcaaagaagtaTCACTTCTCACTCATCAGTGCACGAGCAAGGCACAATTTGGAAAGAAGGTTGCTGCAAAATCTTTGCAAAAGATATCTCACGATAATGACAAGAAATACAAATGTTCGAAATGTGACACATCTTTCGCAAGTTCACAATCACGAAATGCTCATATGAGAATGCACGTCGAAAACACGCATAACAATACGGCACAAACACACGAAATTAAAGCTGAAAGGGATGACGAACCGATGCCAAAATTACGCCCAGAGACATCGCTAGAATACAATATATCTCCTATCGAGCCAAAAATCGAAATCAATGAACAGAGTACACCCCCACCTCTTAAACGGACTCTCATTAGAACCGCTAATggACATCGATGTGGTGTATGTCAATCACCATTTGTGTCAAGAGAGTTAGCAGTGGCGCATTTAAGATCCGCACATCCTGTGATGCCATATCAGTGTCCTTATTGCAAAAAACGCTTTACGACGCAATACACGTTTACTCATCACATAAAAACAGAGCATCCCGACGAACCCGAGAAATAA
Protein Sequence: MDNTINKWDNVCRLCSEERNEMLPIFGGEGLQRRMAQKLRACLPVLVYKTDPLPKQICQFCAARLDDAYEFREYCLNVYKNMHAMLFKCKQIDSVQIFLDAMKNSPDPCQAQLCKERSRAPPPLVPLSIGLPFDDSVTPINQISQDQLQNFCMETLSELPCEVEIKEMNVDPILDTGTMICEPLKKKRKLSEMFDTNVQTKMDIVSIFDTEEENSVFKVDYQTKKEEKRTSILEQVLTGNLTMNNHQKLQPRARLTSEWWCAPCNNYYRTKDSLMKHMQLHCPRIYTCRKCSLSFESVEILAKHEANNHLKVKLDFTESLKDCHKCDRQFISWEMLRQHRLRDHLAELTEIGTNTWCSLCNRFFPTVETYQNHIQLHQANSLISQKLPFAESAISKTAERPREIKREEQFYENVKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRVTEHNVQPTMLPVLSAVEQEEALNAEREAREAREAKTRGAKNKFYSEMMEKNNVLVDDESSTKRNSSGLKNVARCGICLQWFSDHTTMLTHLQTHSDNSHKNFICHICKKSFKEQSQLLRHETCHKRLSLDNAPLYTSAVCNKSSSMDKSQQKMHTVDRTYHCAKCNKIFFKEVSLLTHQCTSKAQFGKKVAAKSLQKISHDNDKKYKCSKCDTSFASSQSRNAHMRMHVENTHNNTAQTHEIKAERDDEPMPKLRPETSLEYNISPIEPKIEINEQSTPPPLKRTLIRTANGHRCGVCQSPFVSRELAVAHLRSAHPVMPYQCPYCKKRFTTQYTFTHHIKTEHPDEPEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110023;
90% Identity: iTF_00110023;
80% Identity: -