Chis005236.1
Basic Information
- Insect
- Cataglyphis hispanica
- Gene Symbol
- -
- Assembly
- GCA_004195275.1
- Location
- SGAY01006279.1:3703-5484[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3e-05 0.0016 19.5 0.9 1 23 78 100 78 100 0.98 2 13 0.14 18 6.8 2.3 1 23 143 166 143 166 0.96 3 13 1.3e-05 0.0016 19.5 1.6 3 23 178 198 176 198 0.96 4 13 0.0042 0.54 11.5 2.6 1 23 206 229 206 229 0.95 5 13 0.01 1.3 10.4 4.9 2 23 312 333 312 333 0.98 6 13 9.3e-05 0.012 16.8 2.0 1 23 342 365 342 365 0.97 7 13 0.02 2.5 9.4 2.0 1 23 379 402 379 402 0.95 8 13 1.3e-06 0.00017 22.6 1.2 1 23 408 431 408 431 0.96 9 13 0.013 1.7 10.0 0.8 3 23 438 459 436 459 0.94 10 13 0.00095 0.12 13.6 0.4 1 23 464 487 464 487 0.97 11 13 1.9e-08 2.4e-06 28.4 0.4 2 23 494 515 493 515 0.97 12 13 9.7e-07 0.00012 23.0 0.7 1 23 521 543 521 543 0.98 13 13 3.9e-07 5e-05 24.2 0.1 1 23 549 571 549 571 0.98
Sequence Information
- Coding Sequence
- ATGAGACTGTGGCAGCATGCCGATGCCGGTGGTAAATTGCGATATTCATTGATACCAGTGTTAAACAACGTCGCTAAAGCTGAGGAAGGCGTAAGTGTATTTGATATACCGCCCGATTTGACCTCcattaaaattgaagagaaCGAGAATCAATCGAACAATCGAAGAAGTAGCAATGTCGACAGTTGCATAAATTCCTCGATACATTTTCACGAGATAgccattaataattacaactgCAACAAATGCGGTGTGAAATTCCCCATGCAATCCATGCTGAATCGCCATAAGATAACGCACAATATGCGTTCATGGTTTCGCGAGAGATACTCGAGAGAGAAGCACGCGCAACGTTTAAAGATAAACTCTCGAAAACGATGCAGCGGACAATTAGAGGCGCGAAGAAAACGTTCAGAGGAAGCAAAGTACTTTTGCACGTTTTGCAATTTGAGTTGTAACAGACTAGCGATTTTATTAGCGCACATAAAGAGAAAACACGGGGAAGACACGACGAATTCGAAGAAACTCGCTTGTACGATCTGCGATTACAAGTGTTCGAGCGAAGCGAATCTAAATAGACATATGTCTAAgcataaaagcaaaaatacgACGAGTTTTGCTTGCAACATGTGTGACTTCGAATGTAAAAGGAGCACTACTCTAGCGTCGCACTTGACGCGGAATCATAAGAGATCTAAGAAAAACTCGAGCGCGTCTCCCCCAAAGAGACGTAGAATAACAAAGTACAACGCGTCTTCTGATAAATCTTGCTTGCGAAACAGTCGGGAAACAACCAAGAAGGCAGCGTTAATCCCATACGAAGATTCCAATCTGATGATTAAGGAAGAAATTTGCATCGAAGAAGATTTCAACGAAAAGGGAATTGCCGCTGAAGAAATCCTGAAGAAATCCAGCCAGAAGAATATTGGCGAACGCTGCGATCTCTGCGATTTTACGTGCGCAAAGAAAAGCACGTTATACTCGCATAAACGTCGCCACAAGCTGGAGGACATCGGCGAGGTATACGCGTGCAACGAATGCGGCTTCAAGACCAGCAAGAAATCATCGTTGTACTCTCACATAAAGCGGAAGCACAAGGAGCCGCGAAGTACCTGCGACGCGCAGCCGGAACTCTTCTATTGCAGCCAGTGCGACTACAAGAACAAGAACAAATATGAGCTGAAAATACATGTCGCGCGTAAGCATTCGGACGATTTCAAATTCTCGTGTGAAACATGCGGCAAGAAGTTCAAGGTCAAGGGCGATCTCACGAATCACATACGTTTTAGCCATCGAGAACAGCCGGTAATCTGCGACGTTTGTGGCAAGACCTGCCTCAACAGCAACTCCCTATACGTGCATCAGAAGTTCGCGCACTACAAGGCCAAGTACGAGTGTCAGATATGCAAGAGGCGAATGGTCAGTCAGGAGAATCTCGACGAGCATATGCTCAGACAGCACGAGCGCAGGGAGAACGTAGTGTGCGAAGAGTGCGGCAAGACATTCTCGCGGAACAGTAGATTGAAGGTGCACATGAGGATCCACACCGGGGACAAACCGTACAACTGCACCGTCTGCAACAAGTCTTTTGCTCGAAGGACCGCTCTCAAACAACATCTGCTCATTCATACTGGTATTAGGCCGTACGTGTGCGATATCTGCGGCAAAGCCTTCACACAGAAACCAGGACTGATCAGCCATAGGAAATCGCATCCTGGCTCTCATCCGCCACTACCGCGTGTCCTCATCGATCATATCTTGAATGACGTAATGAACGCTTGA
- Protein Sequence
- MRLWQHADAGGKLRYSLIPVLNNVAKAEEGVSVFDIPPDLTSIKIEENENQSNNRRSSNVDSCINSSIHFHEIAINNYNCNKCGVKFPMQSMLNRHKITHNMRSWFRERYSREKHAQRLKINSRKRCSGQLEARRKRSEEAKYFCTFCNLSCNRLAILLAHIKRKHGEDTTNSKKLACTICDYKCSSEANLNRHMSKHKSKNTTSFACNMCDFECKRSTTLASHLTRNHKRSKKNSSASPPKRRRITKYNASSDKSCLRNSRETTKKAALIPYEDSNLMIKEEICIEEDFNEKGIAAEEILKKSSQKNIGERCDLCDFTCAKKSTLYSHKRRHKLEDIGEVYACNECGFKTSKKSSLYSHIKRKHKEPRSTCDAQPELFYCSQCDYKNKNKYELKIHVARKHSDDFKFSCETCGKKFKVKGDLTNHIRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQICKRRMVSQENLDEHMLRQHERRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYNCTVCNKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729517;
- 90% Identity
- -
- 80% Identity
- -