Chis017517.1
Basic Information
- Insect
- Cataglyphis hispanica
- Gene Symbol
- zfp-2
- Assembly
- GCA_004195275.1
- Location
- SGAY01018787.1:1-2194[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0029 0.37 12.1 0.2 1 20 24 43 24 45 0.94 2 11 8.7e-06 0.0011 20.0 1.4 1 19 122 140 122 145 0.95 3 11 0.00015 0.019 16.1 5.2 2 23 152 174 147 174 0.95 4 11 0.0067 0.86 10.9 3.0 1 21 180 200 180 205 0.94 5 11 1.6e-08 2e-06 28.6 2.2 1 23 212 234 212 234 0.98 6 11 2.3e-05 0.003 18.7 0.6 2 23 244 265 243 265 0.97 7 11 0.00041 0.053 14.7 0.4 2 23 272 293 271 293 0.97 8 11 1.7e-06 0.00022 22.2 2.3 1 23 299 321 299 321 0.99 9 11 3.4e-06 0.00043 21.3 1.8 1 23 327 349 327 349 0.94 10 11 1.4e-05 0.0018 19.3 0.9 1 23 355 378 355 378 0.94 11 11 1.3e-06 0.00016 22.6 0.8 1 23 384 406 384 406 0.96
Sequence Information
- Coding Sequence
- ATGAATGGAAacaatacacaatatatagttatttcagaaaatggtcaaattatatcaattattactgACTATGAATGTGTGACATGTCACCGTATCTTTCAATCTGAAGATATGTTGAAGGAGCATTTAGACATGTGCAGAGAGGAAGATGACACAACCAATATCATGGAGTTCAATGATATGGAAAATTACGATTCAGAAGATAATGAAGAGGATGAGGATGATCCATCTTTAAATGaagatTCAGATTCCAAGAgccaaaaaaataacaatgaaaagATTCAACTTGTAATCAAGCCTGTACCAGAAACGCAATGTCATTGTTGTGCAGAAGATTTGAAGACAGCACATAGCGGCGGAGAATTCAAATGTCCCCATTGTAATctcagttttaaaaaaaaggcaTCTTTGAATAGGCATGATATAGTTATACACTGGAAGTGCGACACGTGCACGTGCGACGAATGTGGCTCATCTTTCCGTgataaaaaagcattaaataaaCATCGTTATACCACGCATGgagatcgtaaaatttttagatgtgAGCCTTGCGACACTTATTTTTCTCGAGGTTACCATTTAAATCGACACATTATGCAATCTGGTTGTCACGGAAGTATACTCAATACATTTAGTTgccaaGTTTGCAAGAAAGTTTTTACGCGTAAGGATAATTTGCGGGAACACTTGCGTACTCACGCGGGAACACCTCAGAGACAAAAAAAACCGTGTAAATATTGTCCAAAAGAGTTTTTTACGAGCCAACAGTTGTTAGTTCATGAACGTATGCATACTGGAGAACGGCCAGTCTCATGCGATTTATGTCCGAAAACATTCCTCTCATCGTTGGCGCTAAAAAAGCATCGTCGTGTACATACCGGAGAGAAGCCGTTcgaatgtaaatatTGTCAGAGAAAGTTTGCAGCTCGTGAGACGCTGAATCGTCATCAACGGACTCATACAGGTGAAAAGCCGCATGTGTGCCAATATTGCGGTAAATCGTTCATACAAGCAGCTCAATTAAGAGCACATGTATTCCACCATACTGGAGAGAATGGTTTTTATTGCGACGTATGCGGTAAAGCATTCAACCGGAAAGCACGTTTAAATATTCACAAGAAATTCGTACACGAGGGTGCTATTCcatttacatgtaaaaattgcgataaaGGCTTCACACGAAAAGAGGACTTGGTGAAACATGCGCTGTTGCATACTGGCATCAAAC
- Protein Sequence
- MNGNNTQYIVISENGQIISIITDYECVTCHRIFQSEDMLKEHLDMCREEDDTTNIMEFNDMENYDSEDNEEDEDDPSLNEDSDSKSQKNNNEKIQLVIKPVPETQCHCCAEDLKTAHSGGEFKCPHCNLSFKKKASLNRHDIVIHWKCDTCTCDECGSSFRDKKALNKHRYTTHGDRKIFRCEPCDTYFSRGYHLNRHIMQSGCHGSILNTFSCQVCKKVFTRKDNLREHLRTHAGTPQRQKKPCKYCPKEFFTSQQLLVHERMHTGERPVSCDLCPKTFLSSLALKKHRRVHTGEKPFECKYCQRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDVCGKAFNRKARLNIHKKFVHEGAIPFTCKNCDKGFTRKEDLVKHALLHTGIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -