Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.3e-06 0.011 16.2 0.0 18 39 3 24 1 31 0.81

2 4 0.033 1.1e+02 3.3 0.0 21 34 58 71 44 77 0.80

3 4 0.65 2.2e+03 -0.8 0.0 32 45 86 100 86 100 0.89

4 4 1.7e-12 5.8e-09 36.3 0.1 4 40 102 138 99 142 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.3e-06	0.011	16.2	0.0	18	39	3	24	1	31	0.81
2	4	0.033	1.1e+02	3.3	0.0	21	34	58	71	44	77	0.80
3	4	0.65	2.2e+03	-0.8	0.0	32	45	86	100	86	100	0.89
4	4	1.7e-12	5.8e-09	36.3	0.1	4	40	102	138	99	142	0.91

Coding Sequence: GGTTCAAGCTTACAACATGCATCAGAAATGTTCAGAATTCCTAAAACTGTGTTATGGAGACGCATACAAAAAGAGGGTTATCAGAACTTACGTTCTGAAGCCAAGAGATCATATGCTTTAGATACACGAGAGGCTGCTGTTAAAGCTTTGGAAAGAGGAGAGAATCTGACAAAAGTTGCATTagaatttaaaataCCAAAGACTACATTGTTTAGAGATAAAGCACGGCTAGTTGATCAAGGTAAATTGCCTTTGTCATTTTGGAAGAAACGCAAAACCGAAAATGAGGAATTGAAAAGATCGCGATTAGAAGAGGCTGTAGCTGCCTGCAAAGGTGGCAAAATGTCGCAAGCTGCAGCATCTATGACATATCATATTCCAAAAACTACGATATGGCGAAGGCTTCAACAAGAAGGCAAAAAAATGGGAAGActctcaaatataaaaaaacgacAACATCTGGGTGGTATGCCGCAGCACGATACTGAAGTAAAAATACAGGAAGGCTCCAGCTTTAGTTATTGTGAGGTTTCTTCGGAGATACCTATAACTTATATAGATGACAATAGTATACCTGAAgattctgtaataattttaacaacagAGGAAATGgaacaattaaatttcgaaGAAGGAAGACAAATCATTGTAAATacagAATCTGGACAGGAATACATTCCATGTACAATAAGTATTGAAGATAACTCAAACTATTCTGAAAGTGAaagttaa
Protein Sequence: GSSLQHASEMFRIPKTVLWRRIQKEGYQNLRSEAKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDQGKLPLSFWKKRKTENEELKRSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQEGKKMGRLSNIKKRQHLGGMPQHDTEVKIQEGSSFSYCEVSSEIPITYIDDNSIPEDSVIILTTEEMEQLNFEEGRQIIVNTESGQEYIPCTISIEDNSNYSESES

Sequence clustering based on sequence similarity using MMseqs2