Chis019214.1
Basic Information
- Insect
- Cataglyphis hispanica
- Gene Symbol
- retn
- Assembly
- GCA_004195275.1
- Location
- SGAY01001836.1:2670-10134[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-21 2.7e-17 63.7 0.0 15 89 35 107 29 107 0.94 2 2 1.6 6.9e+03 -1.7 0.0 25 38 242 255 203 259 0.68
Sequence Information
- Coding Sequence
- ATGATAATACATAGCGACGAATGGTTACTTTGCCTCGTTGAAGGTAGCGTGCGATGGCCATCGTTGCGCGGTACTACTTCGCTACCACTACACGAGGAGACGAGCCGCGgAACACCTATCAATCGGCTACCTATCATGGCAAAATCTGTACTGGATCTTTTCGAGCTTTACAAATTAGTGGTCATGCGAGGTGGCCTGGTCGAAGTGATCAACAAGAAGCTGTGGCAGGAGATCATTAAAGGTCTTCGGTTGCCGGCGAGCATCACTTCCGCGGCGTTTACTCTGCGCACACAgtatatgaaatatttatacccGTACGAACAACAAAAGGAAAATCTCTCGACTCAGGAGCAACTGCAGACGGCTATCGAGACGAATCGTCGCGAGAGCCGCAGAAGCAATTACACCACTTATGCTACTAACAACGAAAGTATGGTAGCGCGGAGTCAACACAATTCGATGCCATCGAATTCGTTGCCATTGCAGATGCCACTTAGCATGGCCCAAATGGAGCTCCATGGATCGCAATCGCCGTTCGTAAACGGACACCCGCAGCATCATTCTCATAACTCGCAGCATGTTCCTTCGAATCTAGGATCCAACATTTCAGAATACATGATGAAGATGTTGAGAGATAGAAGTAACTCGATTACCAATAACTCGATAATTCCACAACAGACTGGCAATACGTCGATATCGCCACCGACGACGGAAGCATTTAGCGCAATTGAATTGTCCAAACTGACTCTATGGAATTTATATaaccaaaataataataaaatttattcagttGGTCAACAATCCTTCCCTCCGTCAACATCCCACTCGCCATTAGGGCCGGCAACTAGCCCGGAACCACAAAGAGAAGCCTTGGATCTTGCAAACTCTGCACATAGgTCAAATCCGGTATCCCCTCCAAGTGCTAGTAGATCTGTTAGTTCTCCACCATCTGGTAATATGAAAAGAGACCGAGATGCTGCGGAACTCTCATCTCCAACTCCCAATAAAAGGATATTTTCTGATGAGGAAAATATTCCCGATAGGAACTGTATGCGCATTACACAGATGGTCACTATGCGAGAGAATGGACGACGTGAACTAGCAATTAGCGTGGATATCGATGGTGTATTATACGAAGGTGTTTTACCGGCGAAAAATGACGATGCCAGTAGTATATCATCAAATTCAAACACCATAAAGCGTTCACGAAATAGCGAATCGTAA
- Protein Sequence
- MIIHSDEWLLCLVEGSVRWPSLRGTTSLPLHEETSRGTPINRLPIMAKSVLDLFELYKLVVMRGGLVEVINKKLWQEIIKGLRLPASITSAAFTLRTQYMKYLYPYEQQKENLSTQEQLQTAIETNRRESRRSNYTTYATNNESMVARSQHNSMPSNSLPLQMPLSMAQMELHGSQSPFVNGHPQHHSHNSQHVPSNLGSNISEYMMKMLRDRSNSITNNSIIPQQTGNTSISPPTTEAFSAIELSKLTLWNLYNQNNNKIYSVGQQSFPPSTSHSPLGPATSPEPQREALDLANSAHRSNPVSPPSASRSVSSPPSGNMKRDRDAAELSSPTPNKRIFSDEENIPDRNCMRITQMVTMRENGRRELAISVDIDGVLYEGVLPAKNDDASSISSNSNTIKRSRNSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00280445;
- 90% Identity
- iTF_00280445;
- 80% Identity
- -