Basic Information

Insect: Cataclysta lemnata
Gene Symbol: RREB1_1
Assembly: GCA_963931975.1
Location: OZ008360.1:5539058-5544269[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7 5.4e+02 1.9 1.6 1 14 56 69 56 79 0.79

2 11 0.043 3.3 8.9 0.2 1 23 269 291 269 291 0.97

3 11 0.0011 0.085 13.9 0.4 1 23 300 322 300 322 0.99

4 11 0.00069 0.053 14.5 2.0 1 23 328 351 328 351 0.97

5 11 0.0028 0.21 12.6 1.6 1 23 700 723 700 723 0.96

6 11 6.5e-05 0.0049 17.8 0.3 2 23 920 941 919 941 0.97

7 11 0.024 1.8 9.7 5.3 1 23 947 970 947 970 0.97

8 11 0.74 56 5.0 0.8 3 23 1005 1027 1003 1027 0.81

9 11 0.36 27 6.0 0.2 1 23 1051 1074 1051 1074 0.88

10 11 0.0017 0.13 13.3 0.2 2 23 1114 1135 1113 1135 0.96

11 11 0.011 0.84 10.8 5.2 1 23 1141 1163 1141 1163 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7	5.4e+02	1.9	1.6	1	14	56	69	56	79	0.79
2	11	0.043	3.3	8.9	0.2	1	23	269	291	269	291	0.97
3	11	0.0011	0.085	13.9	0.4	1	23	300	322	300	322	0.99
4	11	0.00069	0.053	14.5	2.0	1	23	328	351	328	351	0.97
5	11	0.0028	0.21	12.6	1.6	1	23	700	723	700	723	0.96
6	11	6.5e-05	0.0049	17.8	0.3	2	23	920	941	919	941	0.97
7	11	0.024	1.8	9.7	5.3	1	23	947	970	947	970	0.97
8	11	0.74	56	5.0	0.8	3	23	1005	1027	1003	1027	0.81
9	11	0.36	27	6.0	0.2	1	23	1051	1074	1051	1074	0.88
10	11	0.0017	0.13	13.3	0.2	2	23	1114	1135	1113	1135	0.96
11	11	0.011	0.84	10.8	5.2	1	23	1141	1163	1141	1163	0.97

Sequence Information

Coding Sequence: ATGGACGCCATCGTGGAAAAGAAAGACTTGAGGCATCACAGGACCACGAGCATAGACAGCGACAACCGCTCCGACAAAAGCGAAGACGAGGAGTCCAGGAGAGCTCGCAAGAGAACAGCGTCGTCGACTCTCACTCATATACCTTTGGACAAGAGAATCGCAAGGTTCGAATGCCAGAAATGCCGCCAGCGTTTCGACTCCACCAACGCCTACGACTTCCACCGTTTCACTGTGCACAGCGAGGACGCCAGAACCGGCTTCGACGATCTCACCTTCGTCGATTTCTCTAGCAAAAAGTTTCCGGAAATAGCCCGCAGCGTTTGCGAGAGAAACCCTCACATCTCGATCACGGAGCAGCGGTACAGGTGTGACTTTTGCTCAAGGGATTTCCCTTGCGGACAATCCCTAGACATCCACAGGAAATCATGCACAACAGCCCGAGTACAGAGTCCAGAACGCGACAGAAGGGAGGAGTACTTTGCGAAACTCGATCTTAGAAACCGATCGTTTACCTTACCTGGAACTTTAACACCGCCAATGGATAGATTCACGCCTAAGTTCGAAGACAATCACCATAGTCACAACGGAGTTAGACATAACGATTCAGTGCGAGACTTGGCTGACATTCAATCCATCTTAAGTGTCACATCAACTGGCGGTCTTCTTGAACGGCTCACAGGCACAAGGGTATCTTTAGGCGATGCCGTATTGACGCCTCCAGACACTGCATCCAAAGAAAGAGACCAAGAGGAGACGCAGGATAATTTCGCAGCTGAATTCAGGCGAATGAAACTTCGGGGTGAATTCCCGTGCAGATTATGCACCGCCAAATTTCCCAATCTGCGTGCATTGAAGGGCCATAATAGAGTTCATCTTAGTGGCACTGGACCCGGGCCTTATCAGTGTAATATGTGCCCACATGCCTCGCTGGATAAAGCAGCCTTAGTGCGACATATGCGTACACATAATGGAGATCGGCCCTATGAATGCGCCGTGTGTAACTATGCGTTCACAACAAAGGCTAACTGCGAAAGACACTTGAGAAACAGACATGCTAAGGTTACGAGAGAAGACGTCAAACGTTCAATCATTTACCACCCGTCTGAAGATCCTAACAATGACGAAGTAAACTCAAAACTTGCGCGGGATGAAGTCAAGCGATCACTAGCTTTCCACACACCAGAAGTTGAGAGACGCAGTGAGAGCACTGATAGAGACACTCCACTGTCTCATTTCGCACCTCGTTTCATCACTGAGAGGCATCCGGTGGTCTCTCTTACTTCTAAACCATTACCAGAGACTCCTCGAGAACCACCGTCTCTAATCCCAAGAGACACTGAGCAAGCTGTACCTAGAATTAAAGTTAAAGGGCTGGGACAACTTACACAGATACCAGAATACAGACCGCCAGAAATATCCTTTAAGCCCCACGACCTTCCATCTGAGAGTTATGACGAAGACGCCCCAGTAGATCTCAGTACAAGTGACAACAATAGCTGTGATGTTCTTGATCTCAGTAAGAAGAAACGCCCGGAAACTGACGAACTTCAAACTCAACCTAGACCATCATTTGAACCAGACCCGGCTACAGTGGCCTCTACATTTGAGAAGCGATTGCTGCTTGCCCAGCAACGGCTTTTCGAAAACACTCTTCCGAAAATTGACCCTGCTTACTACGCAACTCAGTTAACCCAACTGTATGGTGGAGTTCCCGGTATACCCGGGCTGCCCTTACCCCCGTCCTTTCCACTCAACCCTTACTTTCTCCAGCCTTCTTTTTTTTCTCACCCAACTGATTCGCAGGAGCTTGCAGAGATAAAACAACGCATACAAAAGGAAATCATTCGCGGCTTAAACTTGTCCGGGGGCAGGCTAGTTCCAAATGAACAGGAACCAATAACCAAACAGGAACCGGAGGAGGAAGAACAGAAACCTATTATTCCACAACCCACATCTCCGTCCCCAACACCGCGTCCTGAATCTCCTAGACCATTAACCAACAGTCTCGTGTCACAAAACGACGCAGTAAAGATGGTAATTAAAAATGGTGTGCTAATGCCTAAGCAAAAGCAGCGAAGATATCGTACTGAAAGACCATTTTCGTGTTCCCAATGCTCAGCCCGTTTCACTTTGCGGTCAAACATGGAGCGTCATGTCAAACAACAGCATCCACAGCACTGGAGTGTAAGGAGACCCACTCCTCGTCCTCCCCCTCCGTACCCGACCTCGGAGACTTTGACAGATCGTGTGAAATACGCCCTACTAGCAAGACACTTGGAGAGACCACTCCAACAGCCGGATCATTCGCCTGTGCGTAGAGATTCAGACGAAGTTGCTGACAAtgaagaagacgaagaagacACTCTAGTGATAGACGAAGAACCTGATTCGGATCCAAAATCTGAGGAACACACAGCAGCACACAGAGCTGCAGCTGAAATTTTGATGGCGACACGCGAGCAGGAACTCAACAAAGATTTTGACCTCAAAATTGCTGGTAACTTGATCAACAAACCAGTACCTATAACCACTGAGAAAACTGAAACCGGCACGGACCCCATTCAAGAGTCTGCTCACGAACCGATGCCTGTACCTATAGTCCCATCTCGAAGCGATGAGGAAGAAGACGAAGAGGGACTAGTTGCTTCGACAAGCGAGGGCAACAACTCTGGGAGTGATGAgaataaGTCTGAATCTGACACTGGAATCCAACCGCCGAAGAAGAAGTCCGCGTACAGCCTGGCTCCCAACCGGGTATCGTGCCCTTACTGCAACAGAACGTTCCCGTGGTCCTCATCCCTCCGGCGTCACGTGCTGACTCATACTGGACAGAAGCCTTTCAAGTGCCCGCATTGCCCACTGCTCTTCACGACCAAGTCCAACTGTGACCGTCATCTGCTGCGTAAGCATGGTGGATCGGCGCGAGCGATCCTAGCCGAACCAATCCCTGATGCTGTAACCCAGCCACAGGTGACCAACGACTGCAGAACTGCCCCTGAGAGGCCGTTGAAATGTGTGTCCTGTCCCAACAGCACATTCTCCACCATGGAAAGTCTCAAGAGCCACATGTCGTCCAGGCATGCTACTAGCGAATCGCAGCTCAGCTCCTCAAACTCTGAGACGGTAGACGAAGGGTGTGACGGTCTAGTTTTCAAGTGTCATCTGTGTGAAGCGTCGTTCGGTGATAGAACTGGCGCTTTGGGCCACTTGTCTTCGGCTCATGCGACTGAATACAAGCAGCTGGTCAGCAAAGGCGCTCTGGATGCTGCAAGCGATCGCAGTGAAAGCGCTGATGATGACGAGAGGGGGAAGTTTCCTGACCATGCTAACAGAAAGGTGGTTTGCGCGTTCTGCGTCCGCCGCTTTTGGTCTGCGGAGGACCTCCGTCGCCACATGCGCACGCACTCCGGCGAGCGGCCGTTCGCGTGCGACCTGTGCCGGCGCAGATTCACCCTCAAGCACAGCATGCTGCGACACCGCAGGAAGCATCGGGAGGAAGTCACTGATGACGAGGAAGCGACGCCGCCGAACACCCCTCACGAAGCAGGGGTTATGACTAATGGGTACAGTTACCATGACGACGAATGCTCCGGAAACGAGATCCAGAGCAACGTCAACAACAACAACTCCCCCCCATCCGCCCCTTATGACAAGAAGCTCAAACTGGACATGACCTCTCGCAAGTATTCGTCAGAAGAGAATGACACCGAAAACGGAAGCGACTTGATCGGCAAACTCCTGGGGATACCAGACAAAACCATCTTGAACAAGCTCCTATCTTCAGCCGACGAAGCAGCCAAGTTCTTCGGGGTGAACAAATGA
Protein Sequence: MDAIVEKKDLRHHRTTSIDSDNRSDKSEDEESRRARKRTASSTLTHIPLDKRIARFECQKCRQRFDSTNAYDFHRFTVHSEDARTGFDDLTFVDFSSKKFPEIARSVCERNPHISITEQRYRCDFCSRDFPCGQSLDIHRKSCTTARVQSPERDRREEYFAKLDLRNRSFTLPGTLTPPMDRFTPKFEDNHHSHNGVRHNDSVRDLADIQSILSVTSTGGLLERLTGTRVSLGDAVLTPPDTASKERDQEETQDNFAAEFRRMKLRGEFPCRLCTAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPEVERRSESTDRDTPLSHFAPRFITERHPVVSLTSKPLPETPREPPSLIPRDTEQAVPRIKVKGLGQLTQIPEYRPPEISFKPHDLPSESYDEDAPVDLSTSDNNSCDVLDLSKKKRPETDELQTQPRPSFEPDPATVASTFEKRLLLAQQRLFENTLPKIDPAYYATQLTQLYGGVPGIPGLPLPPSFPLNPYFLQPSFFSHPTDSQELAEIKQRIQKEIIRGLNLSGGRLVPNEQEPITKQEPEEEEQKPIIPQPTSPSPTPRPESPRPLTNSLVSQNDAVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRPPPPYPTSETLTDRVKYALLARHLERPLQQPDHSPVRRDSDEVADNEEDEEDTLVIDEEPDSDPKSEEHTAAHRAAAEILMATREQELNKDFDLKIAGNLINKPVPITTEKTETGTDPIQESAHEPMPVPIVPSRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGIQPPKKKSAYSLAPNRVSCPYCNRTFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDAVTQPQVTNDCRTAPERPLKCVSCPNSTFSTMESLKSHMSSRHATSESQLSSSNSETVDEGCDGLVFKCHLCEASFGDRTGALGHLSSAHATEYKQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRRKHREEVTDDEEATPPNTPHEAGVMTNGYSYHDDECSGNEIQSNVNNNNSPPSAPYDKKLKLDMTSRKYSSEENDTENGSDLIGKLLGIPDKTILNKLLSSADEAAKFFGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: -
80% Identity: -