Clem013331.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008351.1:2760144-2768159[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0022 0.17 13.0 1.0 3 23 606 627 605 627 0.93 2 8 0.00012 0.0095 16.9 1.8 2 23 645 666 645 666 0.98 3 8 2.6e-05 0.002 19.0 2.7 1 23 671 693 671 693 0.98 4 8 3.7e-06 0.00028 21.7 0.4 1 23 707 729 707 729 0.98 5 8 7e-05 0.0053 17.7 0.3 2 23 736 757 735 757 0.96 6 8 1.9 1.4e+02 3.7 6.3 1 23 763 786 763 786 0.93 7 8 0.0039 0.3 12.2 0.9 1 21 794 814 794 815 0.95 8 8 0.0028 0.21 12.6 0.2 1 21 837 857 837 858 0.94
Sequence Information
- Coding Sequence
- ATGGAGGGCTTTTGTAGAGGATGTTTAATAAGATATTATGAACCATCAGAACTTCTACCTCTCACAGAGAAAGTCCAACGCCTATTCACATACTCTACCGGTATAAAAATAAAACCAACCGATGCAGGGACATTTCAAATATGTAAGGACTGTAATACAAATATGAAGCTGTCATGCAAATTCAAGAAACAATGTAAAGCGTCTGATAAAAAATTTAGGCATTATTTAATACTAAAGGAGGCGGGTGATGCATTTGAATTTTCCTCATATGTAAAAAGCAATGATGATAGCTTCAGGTTTCCCTCTCTCAGTGGTCAAAGCACTCCGGCGAACAATCGAACaaaagatgatgataatgAATCAACATGCACCAGTATCCATAACTTCATGTCTGACATCCTCCAGGGTGAAGATATGCCTGATACAGAGGCAAGGATTATAAAGGAGGTCATTGAGGAACAAACTGACATATCAGACGATTCCTTGGATTCTCATTGGTTACAAGATGATGTGTCAGTGGACACTGACATAAGATTAGATTTTAGTCTAAGTCCATTTTCTACTCCACATTCCAATAATCAAAATCTCTGTTACACTCCTAATAAGCATTATGAAGATATACagaatattaatattgataacAGAATAAATATACCAATTGAATATGACATTAATAAAGAGACTATAACAAATGAGTATGAAAGAACTAATAAAATGGCTTTAGCTGAAAATGAAACAGATAAACATACAGAATTAACTAAATGTGAGACAAATAAAGATGTGTTAACTGAATATCATACTAATAAGGATATAGAGTTAGCTGAAGACTACCCACAAAGCCCAAAGAGCAATAACGAAAATAGATCAGTTAAAGATGTTGGTAATCTTGATGCTTCATTTGGTCAATCACCCACTAATAAAAGTAGGGAGCTAGAAAATTACTTTGGTGATTCAATTATAGAAAATGTTAACTATATTACGCAAAACGAAAATGATATAGCTGTCAAAAGCATTCTGGAACCTAAAGATGACaatgattttatacaaaaaGAAAGCATGTGTGCTGTaaaaattatgcaaaatgaAGTAACCCAAAATTTCAATGGTGAGAATCAGGAGGCTGTGAATTCGGATGGAGATTTTTGTGAAACTGTTCTACCACTACAGAAATCACCTTTCGAAACTAATGTAAATGgcaatattgaaaatgtacCAGATAATAATTCCCTCGCAGAAAATCATAATACATTTGATAcccaaaacaataaaaaaaatatcctcaTAACTGTAAAAAATGGAAATGAATTTGTCATAAATATTCTTGATCCTAATGCTTCTAATGATGAACAAAATAAGGATTACTTTTCAAGTTCAGCTGAAAATGATGATAAGATTAGAGAGAAAAATAATGGTGAACATGATATGCCTATGGATCAAAACCCCTTAGATTTTAAAACAATTGATAGtgatatattaaataatgataaaaaagatattgaaaaatgtaatattgttaaaaatgagAAGTGTCATATTTTGGAAAACACATGTGAAAGTGGCCTAATCACTTTAGATGAATTGCTTCTTTCACCTACAGAATACAATTTAAGTCGAGGAGCTTCCACACCAACAATACACAACATACTCTTTGGAGAGAAATTTGATGTAGACGAAGACAGCTATGCAGATAAAATAAGTGTAAAGTCCAGTGAAACAGATATTCTTgacaaaatgataaaaataggCGTTAAAGAATTGCATATAGATACTCCTAGCCCAAATGTTGAAACAAAATACGACTTAGAAACTAAGCATTGCAAAATTTGTGACAAGACTTTCGGAAGTGTGAAAGCATTGAAGATACACGTAGTGAAATCGCATAAAATCAAGATACCATACATCAAGAATAGGGACTTTGATTATAGAAAAAGGACATGTGATATTTGCGGAGAGcaatttaaacattttggtGCCTTTAACAATCATTTGAGGAGGCACAAAGAACCTGAACACAAGTGCCCGAAATGTAAACTAGTTTTTTCTACTAAAAAAGTATTAGAATCACACATGCAATCACATGGACCAGTAAAACACGCCAAAGACCCCCAACCCAGGAAATTCGTGTGCACAATTTGCGGGAGACAATTCCGATTTGCGACCGGCCTGGAGGTGCACATGAAGAGGCACTCCAAAAACTTTGCTGTTTCATGCGACCTATGCGGCAAAGGGTTCTACAGGAAGGTGGATCTGCGTGAACACTCCAGATTACATACCGGGGAGAAACCTTTTGCGTGCCAACATTGCGATAGCACATTCAGAGTGAAACATTCTCTCGTCTGTCATGTGATGAAGTATCACAGCggtCCAGGCGATGATCATTTCGAGTGTGCCCACTGCTCCCGAAAATACATTCTGAGAAGCGATCTGATCAAGCACTTGAAGTATTCACAGCGCTGTATGAAAATAAGGACAGGCTATAAACCTAAAACCAGCAGACGAAGGAAGACTTACCCATGCTCCGAATGCGATAGCGAATTCAAAAGACTGAAGGATCTCAATTTGCACAAGAACATTATATTTTGCGAGGGCATGCGGAAGAAGAAGGGGTTGGACAACTGCGACTTGAAAGTGCAATGGCCCGTTATGTGTGTCGAAAGAAGGAATCGGTCCCGAAATACCACCATTGAGGAAGAATAA
- Protein Sequence
- MEGFCRGCLIRYYEPSELLPLTEKVQRLFTYSTGIKIKPTDAGTFQICKDCNTNMKLSCKFKKQCKASDKKFRHYLILKEAGDAFEFSSYVKSNDDSFRFPSLSGQSTPANNRTKDDDNESTCTSIHNFMSDILQGEDMPDTEARIIKEVIEEQTDISDDSLDSHWLQDDVSVDTDIRLDFSLSPFSTPHSNNQNLCYTPNKHYEDIQNINIDNRINIPIEYDINKETITNEYERTNKMALAENETDKHTELTKCETNKDVLTEYHTNKDIELAEDYPQSPKSNNENRSVKDVGNLDASFGQSPTNKSRELENYFGDSIIENVNYITQNENDIAVKSILEPKDDNDFIQKESMCAVKIMQNEVTQNFNGENQEAVNSDGDFCETVLPLQKSPFETNVNGNIENVPDNNSLAENHNTFDTQNNKKNILITVKNGNEFVINILDPNASNDEQNKDYFSSSAENDDKIREKNNGEHDMPMDQNPLDFKTIDSDILNNDKKDIEKCNIVKNEKCHILENTCESGLITLDELLLSPTEYNLSRGASTPTIHNILFGEKFDVDEDSYADKISVKSSETDILDKMIKIGVKELHIDTPSPNVETKYDLETKHCKICDKTFGSVKALKIHVVKSHKIKIPYIKNRDFDYRKRTCDICGEQFKHFGAFNNHLRRHKEPEHKCPKCKLVFSTKKVLESHMQSHGPVKHAKDPQPRKFVCTICGRQFRFATGLEVHMKRHSKNFAVSCDLCGKGFYRKVDLREHSRLHTGEKPFACQHCDSTFRVKHSLVCHVMKYHSGPGDDHFECAHCSRKYILRSDLIKHLKYSQRCMKIRTGYKPKTSRRRKTYPCSECDSEFKRLKDLNLHKNIIFCEGMRKKKGLDNCDLKVQWPVMCVERRNRSRNTTIEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -