Clem023105.2
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008364.1:8136136-8139052[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1 85 4.4 1.0 1 21 293 313 293 314 0.91 2 19 0.0011 0.087 13.9 3.6 1 23 326 348 326 348 0.99 3 19 1.8 1.4e+02 3.8 0.3 2 23 352 373 351 373 0.90 4 19 0.52 40 5.5 2.3 3 23 380 401 378 401 0.94 5 19 0.026 2 9.6 0.2 2 23 456 478 455 478 0.96 6 19 0.014 1 10.5 5.5 1 23 484 507 484 507 0.96 7 19 0.00064 0.049 14.7 0.4 3 20 513 530 511 532 0.93 8 19 0.0069 0.53 11.4 0.6 1 22 540 561 540 563 0.90 9 19 0.09 6.8 7.9 2.0 1 23 568 591 568 591 0.95 10 19 0.0002 0.015 16.2 0.3 2 23 604 625 603 625 0.96 11 19 0.00041 0.032 15.2 0.3 1 23 631 653 631 653 0.98 12 19 8 6.1e+02 1.8 0.2 2 12 659 669 658 671 0.87 13 19 2.8e-05 0.0022 18.9 3.0 1 23 689 711 689 711 0.98 14 19 0.077 5.9 8.1 0.1 2 23 716 737 715 737 0.94 15 19 0.0074 0.57 11.3 0.6 2 23 756 778 755 778 0.96 16 19 6.9e-05 0.0052 17.7 2.0 1 23 784 806 784 806 0.99 17 19 0.0025 0.19 12.8 9.2 2 23 813 834 812 834 0.96 18 19 0.01 0.79 10.8 0.7 1 23 840 863 840 863 0.88 19 19 5.3 4.1e+02 2.3 2.5 2 23 869 891 868 891 0.94
Sequence Information
- Coding Sequence
- atgtataatagaactctgtctaataaaaataaagatctAAAACTGAAGTTGTCCAATGATTGTCAAGTTCCTAGATTTTGTGGAATATGCTTAAACGAGGAAGAAATACTATGGGCCATTGATACTGAATATGATATTACCATTGGACAGAagacacataaaaaaaatctgaaagaTATTATTGAATACATTTTGAATGATGAGTATCATCAGATACCAGCCAGTCCTCATTTATGTGGCCAAtgcaaggataaatcaattcaATCATACCATTTTATCTATAATGCGAAAGAACTTTCCAATATTGTACATAAATGTGTGAATGACCTTTTTTCAAAAACATTACAAGCTGCAGAACAATTGGAAGTTTTAAAAAGTACTGAGTTCCCCAATTCCAACATTGTTATGGTGTTAGAGAAAGATGCCCAGATGTTTCAGTACACAGatattattagtaaaattatcaaaatagatACAAGGGAAATGCTAAATATTAAATCAGaatcaataaaatcaaatgAGATATCATATTTATCTGATAGTGAAGTTCTTAATCACACTGACAGTTTAAATATAAACCCTGTGACTGAACAACAAACTATAGGATCAGATTTGATGTGCAAAgataaaataaagggagaaaaTAATATGTCACCTGAAAAATCTCCAACAATacaaatagaaaatataaatataagtgaTGAAAATTCTGAAGTTCTTAGAAAAATTGATCATTgtcataatgtaaaaattatcgATATTAAGGCTGACCGAAATTTTCATGACGAGTTTAACTATGAAGAAGACATTAACCTACGATTGGACAACctaaaaatgccaggcaaaAGGAAAAAGATGGCCAAACTATTTCTTACACATAAGtgtaataaatgtaaagaaATATTACCATCATACAAAAGTTGGAAAGAACATGagaaaaattgttataaaagtAAGATGGCCaccaaaaacaaatttaaatgcaAAATCTGCTCAGAAAAGTTTCTGACTCAGAGGTCGTTAAATACACATTATAAAACCCATTCCAAAATACGGTGCAAGGTGTGTCAGTATTTTGTCCCTCAAGAAGACATGACAGAGCACATGAAATTAAATCATGAAGACTATATACACTTATGTAAGCTGTGCAAATTTTTCTCTTTCAATGCCGATGTATTAAAGGCGcacatgatgaaaaaccacaacGGCTCTAAATGTGCTTTATGTTTCAAAAAAGTAGAAGAAACCGAGTTGAAATTTCATAAGTGCAGATTTAGCTGTGTTGACTGCAACgaaaatgtatgtattcattataaatatttagtttcCTACAGGGAACAGATACTGAACAATGTTGATAAAATCAAATGTGTCGATTGTGATTATATTTGCCCCAGGAGGGAAGCCTTGCTTGGACATGTGAACAGAGAACACTTAGATCACCATCCATTTACTTGTGATCATTGTTCACAACAGTTTTACTCAAGAACTACATTAAGGTACCATTTAAATCAGTTTCACCGAGAAAGACAAATTTGTGACCATTGTGACCAGGCTTTCAGTACCAAATTGAATTTGAATGATCATAGAGGGACTTGTGGAAAGATTGAAGGGAAACATAAATGTGACGAATGCACCAGTTCCTTTAATACATTAGAAGAACTGGCAAATCATGTGGGCCTTAGACACAAGGACAATGTctttaattgtaatttgtgcCAAAGAAAATTCTTGACTAGCTTAAAACTACAAGAGCATATGTTTAAAGTCCACAATGGTCTGCAAATGAAACGCAAGAAAAGTATTTTGAACTGTCCTTTATGTGAAAGCGTGTTCAAAAACAAGAAGCAACTAATGCAGCACATTGAAATTCATGGCTCCAATATTAGGTTTCCCTGCAAAGATTGCGGAGCAGACTTTGACAACATAAAGAAGTTACATGCCCATGTCAGGATACACTATGACGATGTGATTCAATGTGCGGATTGCAAGAAAGTTTTAACAACTACATTTTTCCCAAACCACCTAGTTTATTGCAAGACGGACAAAGCGGAGAACGAACTATACACCTGTGAAACTTGTGGGAAGACATACAACTCCAAAAATCAATTTAAGTTACACCTCAAAAACCATTTACAGAAAGTGCCATGCCCCGTATGCAATAAACCAACTAAACCGCTCTACTTGAAAAACCATATCAAATACATGCATTCGAAGCCAAGGAAGCCAAAGAAAGTGTTCAAGGGTAAgacaaaatactttttaaagtgCGACCAGTGTAGCCACTTGGTGTCCAGACAGGGTGAACTAGAGGCTCACATAAACAGAtaccatttaaaaattaaaccatACCAATGCAATTACTGTCAGAAGTCGTTCTTCGGGAAAGAGAGGTTGAAAGATCACCTGATTACGCATACGACTTCTAAAATGTGCTGTTGCAGCGTTTGTAACAAAACATTCCAGAACAACGCCTGTTTGAAACTTCACATGCGCAGACACACAGGGTATACGCCTTACGCTTGTGAAATGTGCGGAGAAAGGTTCAGAACATCAAGTATAATGAACACGCATAAAGTGAAAAAACACTCCAACAAAACGATTTCGTGCCCCCTCTGTTTCACCATGTTCCATTTGACCAGAGAAATGAGGAGTCACTTCAAGAAAGTGCACTGGAAGCAAAAAGACAAGAAGTTCGATCCCAGAGATGTGAAAGAGCTCAAGCCAGAGTTTTATCATTTGTTCGAGGACGGCCGGCTGCCAAAGGTTGAAGGAGAGGGGTTGTATATATCTTCTAAATGTAACGAGAAATTTGATTAA
- Protein Sequence
- MYNRTLSNKNKDLKLKLSNDCQVPRFCGICLNEEEILWAIDTEYDITIGQKTHKKNLKDIIEYILNDEYHQIPASPHLCGQCKDKSIQSYHFIYNAKELSNIVHKCVNDLFSKTLQAAEQLEVLKSTEFPNSNIVMVLEKDAQMFQYTDIISKIIKIDTREMLNIKSESIKSNEISYLSDSEVLNHTDSLNINPVTEQQTIGSDLMCKDKIKGENNMSPEKSPTIQIENINISDENSEVLRKIDHCHNVKIIDIKADRNFHDEFNYEEDINLRLDNLKMPGKRKKMAKLFLTHKCNKCKEILPSYKSWKEHEKNCYKSKMATKNKFKCKICSEKFLTQRSLNTHYKTHSKIRCKVCQYFVPQEDMTEHMKLNHEDYIHLCKLCKFFSFNADVLKAHMMKNHNGSKCALCFKKVEETELKFHKCRFSCVDCNENVCIHYKYLVSYREQILNNVDKIKCVDCDYICPRREALLGHVNREHLDHHPFTCDHCSQQFYSRTTLRYHLNQFHRERQICDHCDQAFSTKLNLNDHRGTCGKIEGKHKCDECTSSFNTLEELANHVGLRHKDNVFNCNLCQRKFLTSLKLQEHMFKVHNGLQMKRKKSILNCPLCESVFKNKKQLMQHIEIHGSNIRFPCKDCGADFDNIKKLHAHVRIHYDDVIQCADCKKVLTTTFFPNHLVYCKTDKAENELYTCETCGKTYNSKNQFKLHLKNHLQKVPCPVCNKPTKPLYLKNHIKYMHSKPRKPKKVFKGKTKYFLKCDQCSHLVSRQGELEAHINRYHLKIKPYQCNYCQKSFFGKERLKDHLITHTTSKMCCCSVCNKTFQNNACLKLHMRRHTGYTPYACEMCGERFRTSSIMNTHKVKKHSNKTISCPLCFTMFHLTREMRSHFKKVHWKQKDKKFDPRDVKELKPEFYHLFEDGRLPKVEGEGLYISSKCNEKFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -