Clem012986.2
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008350.1:10370390-10381848[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00033 0.025 15.6 3.4 1 23 240 262 240 262 0.98 2 11 0.00031 0.023 15.6 6.5 1 23 268 290 268 290 0.96 3 11 0.0021 0.16 13.0 6.9 1 23 296 318 296 318 0.98 4 11 0.00062 0.048 14.7 0.9 1 23 324 346 324 346 0.97 5 11 5.9e-06 0.00045 21.0 1.0 1 23 352 374 352 374 0.97 6 11 6.9e-05 0.0053 17.7 0.0 1 23 380 402 380 402 0.98 7 11 0.00011 0.0082 17.1 0.7 1 23 407 429 407 429 0.96 8 11 1.5 1.2e+02 4.0 3.0 3 19 437 453 436 459 0.91 9 11 2e-05 0.0016 19.4 0.8 1 23 549 571 549 571 0.98 10 11 0.0015 0.12 13.5 3.3 1 23 635 657 635 657 0.96 11 11 3.6e-05 0.0027 18.6 4.3 1 23 667 689 667 689 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCTACTCCTAATAATGTGTCGGGCTTTGGATATTCCTGGGGATTCACGAGTTCGGCTGACCTTACCAAGGGTGAGGTGGAGACACCGAGCAGCATGAGTTATACATTAGGGAATACGGTATCCCCTGAGACAACTCTGACGGTAATGTCTCACAAGACTCCCCAGGTGCAAGAAAAAGTTGGTACCATAGCTGTAGCGGTTTCTAATACTGCCGCGCAAGTAACCAGAGTGGTCACCAACACACCAACTGCGAGGAGAGCTATGTTTGTTTTAAACGAGGCACCCACACATACAATCAACAGAGTGTCGCACCAGAATCAAACTGCAACAATACACACTACTGCCAACTTGACATCGAAACCAATTATGACACCGTTGGGTCCAATTCAGCTTACAGCAGAGGAatgtaatgaaatattaatgaaaaggGCATTACAAGCTCAAGGAATATCCACACCAGTTCTAGATACTTCACAGTTGAACCACACATTATTAAATGGCAGCATTAAAACATTGGCAGAAGCTACCCAACAGACCCAAGCTGATAATATTCAGTCTGTTACTGTACATCAACACCATTTACTGCATACAAAACAAGAGCCTGGTACCACAAATAACTCTCCTAAAGCGGTGTACTCTCAGACAGATATGATGAACACAAACACAGTAATGACAACAGCTCAACCTACTGTTGTCAAGGAGAGGCCATACTCATGTGATGAGTGTGGTAAATCTTTTCTTTTGAAGCATCATTTAACTACACATGCAAGAGTGCATACTGGTGAACGTCCTCATGTATGTGCGCACTGTGGAAAAGCGTTTGCTCGTAAACACTGTCTTAATACACATCTATTGCTCCACTCTGCTGATAGACCGTACAGATGCCACGAGTGTAAGATGGCTTTTACATTAAAGCACCATCTTGTAACACACTCAAGGGTACACAGCCGAGAGAGACCATATGTGTGTGGTGAATGCGGTCGTGGGTTCCCCCTGAAGCGACACCTAGTCACACACAGCAAGTATCATGCAGGCGAGCGGCCCTACGTCTGCAACGACTGCGGCGAGAGTTTCGCGCAAAAGGAGCACCTAGTGATGCACAGCCGCTTCCACGGGTCCCTGTCGCCGTTCGTGTGCGCCGAGTGCGGTGCCGCATTCGCCCGGAAGTTCCAACTGGTGAACCACGGCAGGGTGCATGGGAAGGTGCCCCACGCTTGCCCGGTGTGCGGCAAGGAGTTCTTGCAGAAGCGCACGCTTGTGACGCACATGAAAATACACACCGGCGAAGGTGTCGTCGCGTGCCTGGAGTGTGGCGAGGCGTTCAAATGCAAATCGGAATTACTTCAACATTGCAAGATTAACAGGCATTGTCTTATGACAACGCAGACACAGACACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAACAGcaacagcagcagcagcagcaacagcaacaacaacagcagcaaCAGCAAGTTCAACAACAACAGCAACAAGTTCAAACTGTAATTAAACAGGATGACTTCAAACCGCAGATTGTACAAGTGATCGGTGCTGATGGCCAGATAGTGTCTGAAAAGACAACGCCAGGTTATTCGTGTCCCGAGTGTGGCTCGTGTTTCAACACAAAGGAGGCGTTGTCCCTGCACGTGCGACTGCACGCGGGCGATCGCACGTGCGTGACCGACCTGTGCGCGTTGACCGCCGCACTGCAGCCGGGACTCGTCGCCGCCGCCACTGCGCACACGCACAatCAACCCATACAAATTATATCGTCGAATCCGAACAACGTTGTACATACACAAGTAATAGCTACGAATCATCATATAGCATCGCCCCGTCCAAAGATACACTTTTGCGTGGATTGCGGTAAAGGATTTGCCGCCAAACACGGTTTATTAGCACATCATAGGAGGCATCCAGATGGTAGCTGTACACTCCGGACTCATGTTTGTGATCAATGTGGGAAGGCGTTCTTTCAAAAGAATCACCTTATGCTACACCAGAGACAGCACATGGATCTTCCGCCGAGAAACCAATCAATACAGCAAGCAGCCCAGCAGGCACAACAGGCGGCGCAGCAAGCGGCACAGCAAGCTGCGCAGCAAGTGCAACAACAGGTCCAACAGCAGGTgcaacaacaacagcagcaaCAACAGCAGCAGCATCAGCAGCAACAGAACAGCTTGGAATTGGAGCACCAGCAACATGAACAACCAACACATATACAAGTGGTGACGAACCGGTCCGGCCAGGTGATCGGCAACCAGATAGTGGTCGGGTCCGTGGGCGGGGTGAACGTGGCAAGGCGGCTAGTGGCCGGCTCGCAGCTGCACATCATCCGGCAGGCCGACGGCAAGCAGGCGATCGCGCACAAGCGGCATCACGGGGACGTGAAGGAAGTCGGCGGGCTGGTCCTGTCGACGGGCCGCGGAACAGGGCTGATAAAGTACGAGATATCCATTCCCCCACCCACGTCCGTGGTCCAAGTGCAACAGCTGGACTGA
- Protein Sequence
- MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSMSYTLGNTVSPETTLTVMSHKTPQVQEKVGTIAVAVSNTAAQVTRVVTNTPTARRAMFVLNEAPTHTINRVSHQNQTATIHTTANLTSKPIMTPLGPIQLTAEECNEILMKRALQAQGISTPVLDTSQLNHTLLNGSIKTLAEATQQTQADNIQSVTVHQHHLLHTKQEPGTTNNSPKAVYSQTDMMNTNTVMTTAQPTVVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRERPYVCGECGRGFPLKRHLVTHSKYHAGERPYVCNDCGESFAQKEHLVMHSRFHGSLSPFVCAECGAAFARKFQLVNHGRVHGKVPHACPVCGKEFLQKRTLVTHMKIHTGEGVVACLECGEAFKCKSELLQHCKINRHCLMTTQTQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVQQQQQQVQTVIKQDDFKPQIVQVIGADGQIVSEKTTPGYSCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAATAHTHNQPIQIISSNPNNVVHTQVIATNHHIASPRPKIHFCVDCGKGFAAKHGLLAHHRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNQSIQQAAQQAQQAAQQAAQQAAQQVQQQVQQQVQQQQQQQQQQHQQQQNSLELEHQQHEQPTHIQVVTNRSGQVIGNQIVVGSVGGVNVARRLVAGSQLHIIRQADGKQAIAHKRHHGDVKEVGGLVLSTGRGTGLIKYEISIPPPTSVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00642573;
- 90% Identity
- iTF_00006480;
- 80% Identity
- -