Clem023071.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008364.1:7216789-7220340[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0097 0.74 10.9 3.8 2 23 157 179 156 179 0.96 2 18 0.00019 0.014 16.3 1.2 1 23 188 211 188 211 0.96 3 18 0.012 0.95 10.6 0.7 2 23 224 246 223 246 0.97 4 18 0.00013 0.0098 16.8 0.7 1 23 255 278 255 278 0.96 5 18 0.00059 0.045 14.8 1.2 1 23 290 313 290 313 0.96 6 18 0.00012 0.0089 17.0 0.9 2 23 340 362 339 362 0.97 7 18 0.00088 0.067 14.2 1.6 2 23 372 394 371 394 0.96 8 18 0.015 1.1 10.4 0.8 2 19 399 416 398 419 0.93 9 18 0.00018 0.013 16.4 0.8 2 21 424 443 423 446 0.95 10 18 0.026 2 9.6 1.5 3 23 456 477 455 477 0.96 11 18 0.00047 0.036 15.1 2.2 1 23 482 505 482 505 0.93 12 18 0.00025 0.019 16.0 1.2 2 23 517 539 516 539 0.97 13 18 0.00026 0.02 15.9 0.4 1 23 562 585 562 585 0.94 14 18 0.38 29 5.9 0.1 2 23 592 613 591 613 0.92 15 18 0.035 2.7 9.2 1.7 2 23 619 640 618 640 0.97 16 18 9.9 7.6e+02 1.5 1.2 2 23 647 670 646 670 0.90 17 18 0.015 1.2 10.3 0.2 1 23 706 728 706 728 0.97 18 18 0.19 14 6.9 2.0 1 23 734 757 734 757 0.96
Sequence Information
- Coding Sequence
- ATGCTGTCAATGAAAGAAAAAATggatttaaaactaaaattaggtAATGAGTTAGACGAACTTAAAGCTCGCAAAGACCCTACAACCTTCTTGCCAGAGGAGCCAATGTCGTATGAAATAAAGgtcaaaaagaagaagaagaaaaagaaaaagttagaaGACCCTTTGAAAGATatggatgacaatattccataTGCCACCCCTATAGAGACAGTAATTGGTATTAAATTAGACCCTGAAGTATCCATTAAGGCTGAGGATATAGAGGTGGAGTTGGATTTTAATGATTTCGCCAACAGTTCAGGACTGATGGTGGAAGGTCCCAACAGCGAAGACAGTGAAGAGCCAGCGGTGAAGATTGAGGAGCATAACCGGGAAGCGGTTCTTCTCACCTTCGAGAGTATCATCCATAAAACCGACGACCTAGAACAGCACCAAGAACCAAAAGCCATACCGCCAAAGGCCCAGGTCTGCAAACTGTGCCATCTAGTCTTCCAATCCACAAAAACCCTGAAAATACACCAGAAGAGGAAGCACAAAGTGTTCAGGAAGTCGTTCAAACACATCTGCGATTACTGTGGCATGTCGTACGAGATGAAGAACAGCCTGATGGCTCACATCAAGCGGAAACACGCTCCGGGCGCCCCTGAGAACGACAACGAGGAGAAGACGTGTGAACTCTGTGCTCTAGTCTTCAAGGGCGCAAATCGCTTGCGCATGCACATGAGGAGGAAGCACGGCTACTTCGAAGAGTCCTTCAAGCACGCTTGCCCAGACTGCGGATTGACCTACGACAAGTACAGGAGCTTGATAGTCCACATGCAACGGAAGCATTCTACCGAACCGAAGCCGGTTGATGACCAGTGGTTCAACTGCCCGTTCTGTCCAAACATGTTCTCGAGGCGCGAGACTTATGCCCGGCATGTGCAGAGGAAGCATAAGGTTTCTGATGACACCAAAGCCGACGCAGTCTTAGCCAATCTAGAAAGCGGAAGGAATAAGACAACGGGTGAGATCACATGCAAGGAGTGTCCCCTGGTGTTCTCTTCGATGAATTTTCTCAAATTGCACATGAGAAGGAAGCATAATGCGTTGAAAGAAGACTTCAGACTCAAGTGCAGAATTTGCAACCTGTCCTACAATAAGATTGAAAGCCTCAAGCGGCATGTACGGAGAAAACACGATAAATGTTCCTACTGTGAGGTGTGCAATAAGCAGTTTGATACAAAAGAGTCTTATTTAAACCATTCCCACATAAAATTGATCAAGGAATGCAGCGTTTGCGGTTTGATCTTTTCGTCCCAGGGTGGGTTAGCGAAGCATATGCGCTGCACGCATAAAGCGGGCTCGCCTAAAGTCGCGTTTTGCAGCATATGCAACGAAGGCTTTCATGACAAACGCCAACTCAAACCCCATCTGATGAAAGTCCACATGAATGTGTCTTACACGTGTGTTTATTGCAAGAAAGTCTTCAAAGCTAAAGAGAGTTATCGAAGGCATGTTTTATTCCAACATCCAGCCAATAGCCTCATGAAGGGGGAGATGCAGCAATGTGACAGATGCACTGAAAAGTTTACAGACGAAGTTGAACTCTGTCGGCATATAAATATGGCTCACGGGAACAAGGTTGAGGAGTTATCTCTCCTAGGAGTCAAGAAGGAAGAGAGCGACATCAAAGACTTGTTCCAATGCACCAAGTGCCCCGATATGTTTTCTTCCTGGGACCAACTCAAGGTACATTTCGAGGTAAACCATCAGGTGAACACCAACACCCAATGCCAGATCTGCGGGGAGATAGTGCCAGGGAACGACTTACAAAAGCACATTAAGAGCTTACACGCTGTTGCCATCCAAAAATGCGTTTACTGCGAGTTCCAGACGAAAAACCGAGTCAGCATGACTCAGCACATGTTGAGGCACAAAAACGCGAAGACGCTTCGTTGCGATTTCAACGGTTGCACCTACAAAAGCTACTACGATGTCGCTATGACCAAGCATAGGAAGAAGCACGAAGACTTAGGCGTCAAGTTGCAGTGCAGCAAGTGTCCTTTCCAGACCATGAACAAGTACATACTGAGATACCACGAGGAAGCGCATATGACTGGAAAGAAGCGATACAGCTGTGACCAATGCGATTATGCCACCATACTGCCGGCAAATCTGGTGCAGCATAAGTATAAGCATTCGAATGAGAAGAGGTTTAAGTGCGAGGTGTGCCCCTTCGCCACTAAGTACAACACTTCGTTGAGGTTCCACGTCAAAAAGAAACACTGTGATCTTCCAAGTTTCACAACTTGA
- Protein Sequence
- MLSMKEKMDLKLKLGNELDELKARKDPTTFLPEEPMSYEIKVKKKKKKKKKLEDPLKDMDDNIPYATPIETVIGIKLDPEVSIKAEDIEVELDFNDFANSSGLMVEGPNSEDSEEPAVKIEEHNREAVLLTFESIIHKTDDLEQHQEPKAIPPKAQVCKLCHLVFQSTKTLKIHQKRKHKVFRKSFKHICDYCGMSYEMKNSLMAHIKRKHAPGAPENDNEEKTCELCALVFKGANRLRMHMRRKHGYFEESFKHACPDCGLTYDKYRSLIVHMQRKHSTEPKPVDDQWFNCPFCPNMFSRRETYARHVQRKHKVSDDTKADAVLANLESGRNKTTGEITCKECPLVFSSMNFLKLHMRRKHNALKEDFRLKCRICNLSYNKIESLKRHVRRKHDKCSYCEVCNKQFDTKESYLNHSHIKLIKECSVCGLIFSSQGGLAKHMRCTHKAGSPKVAFCSICNEGFHDKRQLKPHLMKVHMNVSYTCVYCKKVFKAKESYRRHVLFQHPANSLMKGEMQQCDRCTEKFTDEVELCRHINMAHGNKVEELSLLGVKKEESDIKDLFQCTKCPDMFSSWDQLKVHFEVNHQVNTNTQCQICGEIVPGNDLQKHIKSLHAVAIQKCVYCEFQTKNRVSMTQHMLRHKNAKTLRCDFNGCTYKSYYDVAMTKHRKKHEDLGVKLQCSKCPFQTMNKYILRYHEEAHMTGKKRYSCDQCDYATILPANLVQHKYKHSNEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -