Clem019714.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008359.1:1298519-1311527[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0025 0.19 12.8 2.0 1 23 91 113 91 114 0.96 2 12 0.051 3.9 8.7 2.2 1 23 120 143 120 143 0.95 3 12 0.27 20 6.4 3.2 1 23 147 169 147 169 0.97 4 12 1.4e-05 0.001 19.9 2.2 1 23 174 197 174 197 0.98 5 12 9.9e-06 0.00076 20.3 2.1 1 23 201 224 201 224 0.97 6 12 0.25 19 6.5 0.1 2 22 239 259 238 263 0.91 7 12 0.028 2.1 9.5 0.2 2 23 272 292 271 292 0.96 8 12 2.4e-05 0.0018 19.2 0.2 2 23 313 335 312 335 0.96 9 12 1.8e-06 0.00013 22.7 1.8 2 23 345 366 344 366 0.97 10 12 2.3e-06 0.00017 22.4 0.2 1 23 372 394 372 394 0.98 11 12 3.3e-05 0.0025 18.7 1.3 1 23 400 422 400 422 0.97 12 12 2.4e-05 0.0019 19.1 1.2 1 23 428 451 428 451 0.97
Sequence Information
- Coding Sequence
- ATGCATTCTTCAAATGTCTCCACCGCCGAGCCATTGGAGTTATCGAATGTTGATTACGACTCTGAAGACGAGATCCCACTACAGAAGATgagcaaaaaaaattgtgtcgtTAAAAAGAAGAGAAGGGAAAGGAATGTTGCTGGTGACACAATTGGAGCTTCTAATACTTCGCGAGTGGTGCCGGACTGCAAAGAAATAATACTGTCCAGAGAGGAACAGCTCCAGGAGATGCTGGAGAGGTCCAAATCCCAGAACTACCTGAATTCCCCATTCAAGTGCGGGCTCTGCTACAAGGGTTTCATCGACACGAGAGCCTACGAAAATCATCAGGAGAAACACCATGAGCGCAGCGGTCCGTTCTCGTGCGAGGTGTGCCACATGCGCTACCGCACGGTGCGCTTGATGCGCACCCACTCGGCCACCTCGCACGGCAGGCAGTTCGTGTGCAACAAGTGCGGCCACCGGGCGCACACAAAAAACCAAGCTCGCGACCACGAAAGATGGCATAGCGGGTACACGTACGAGTGTCAGCTGTGTGGACAAAAATtcagAAAACCTACTTCGTACCTGACACATATGCGCAAGCGGCATCCGACTGAACACGTATGCAACATATGCGGAGAGAGCTTCGTCAGCAGGCATGGCCTCACCATGCATAAGAGGAAGGCCCATAGGAGAGATTCAGAGACTGGCAACCCTGAGTCTCCTAGCCAGTACTGCGCCGAGTGCAACATACACTTCGCGTCTATCGAGGCGTGGGCGAAGCACGTCATGACCTCCCTGAAACACACTTTGGCGGCAGATGCTAGGAGTACCTGTCTGATCTGCGGCACCGAGGTGACCTCTGGATCACTGCAAACCCATCTCAAACAGCACACCGAAATGCTGCGCTCTATTAAATCCCAGAAGAGGCCGAAACTCAATATTGTAAAAGTCACGTGTGACTTGTGCGGGCAGGACTTCGTGAATCGGTCCAAGCTTCAGGCGCACGTCAAGAGGATCCACCTAGGGAAGAAGTACGACAAGAACATTGTGTGCGAGATCTGCGGAAAGAAATGTACCTCGAACGCGTCGCTCAAGTACCACCAGCGCACGCACACCGGCGAGCGGCCGTTCCCTTGCCCCGTGTGCCCCAAGCGGTTCCCGGACCGCAACCAACTGACGATCCACTCGCGCAGCCACTCGGGCCAGCGGCCGTACCAGTGCCCCGCGTGCCCCAAGCGGTTCACGCAGCGGCCCGCGCTCAACAGGCACTGCCGGGTCCACACCGGCGCTAAGCCGTACGATTGCCAGTTCTGCTCGAAGAACTTCAGCCAGTCCAACTCTCTCAAGATTCATGTGAACACCGTCCATCTAAAGTTGCCATCCAAGAAGAAGGCGCAGGCCGCGGACATAATATGTCCACCAGACAAGATGGCGGCAACACAAAATGGTGGATAG
- Protein Sequence
- MHSSNVSTAEPLELSNVDYDSEDEIPLQKMSKKNCVVKKKRRERNVAGDTIGASNTSRVVPDCKEIILSREEQLQEMLERSKSQNYLNSPFKCGLCYKGFIDTRAYENHQEKHHERSGPFSCEVCHMRYRTVRLMRTHSATSHGRQFVCNKCGHRAHTKNQARDHERWHSGYTYECQLCGQKFRKPTSYLTHMRKRHPTEHVCNICGESFVSRHGLTMHKRKAHRRDSETGNPESPSQYCAECNIHFASIEAWAKHVMTSLKHTLAADARSTCLICGTEVTSGSLQTHLKQHTEMLRSIKSQKRPKLNIVKVTCDLCGQDFVNRSKLQAHVKRIHLGKKYDKNIVCEICGKKCTSNASLKYHQRTHTGERPFPCPVCPKRFPDRNQLTIHSRSHSGQRPYQCPACPKRFTQRPALNRHCRVHTGAKPYDCQFCSKNFSQSNSLKIHVNTVHLKLPSKKKAQAADIICPPDKMAATQNGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -