Clem023236.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008365.1:356090-360335[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.17 13 7.0 0.2 2 21 119 138 118 139 0.87 2 20 1.4 1.1e+02 4.1 0.3 3 23 145 165 143 165 0.92 3 20 0.00046 0.035 15.1 0.4 1 23 170 193 170 193 0.97 4 20 0.00099 0.076 14.0 0.1 1 23 198 220 198 220 0.99 5 20 0.75 58 5.0 5.3 1 21 223 243 223 244 0.95 6 20 0.00026 0.02 15.9 1.1 1 23 256 279 256 279 0.95 7 20 8.8e-05 0.0067 17.4 0.9 1 23 285 307 285 307 0.98 8 20 2.8 2.1e+02 3.2 1.0 5 23 317 335 315 335 0.95 9 20 1.5 1.2e+02 4.0 0.5 1 23 341 364 341 364 0.87 10 20 0.003 0.23 12.5 0.2 3 23 374 395 373 395 0.94 11 20 3.4e-05 0.0026 18.6 1.9 2 22 512 532 511 535 0.89 12 20 0.18 14 7.0 0.7 3 23 539 560 538 560 0.95 13 20 0.0058 0.45 11.6 0.9 3 23 567 588 565 588 0.95 14 20 0.0043 0.33 12.0 0.1 2 19 594 611 593 615 0.92 15 20 2.9 2.2e+02 3.1 1.5 2 20 619 637 619 639 0.90 16 20 7e-06 0.00053 20.8 0.5 1 23 665 688 665 688 0.95 17 20 0.0066 0.5 11.5 1.7 1 19 694 712 694 716 0.92 18 20 0.022 1.7 9.8 0.1 1 23 722 744 722 744 0.98 19 20 0.008 0.61 11.2 0.1 1 23 750 773 750 773 0.94 20 20 0.00091 0.07 14.2 0.2 2 23 780 802 779 802 0.96
Sequence Information
- Coding Sequence
- ATGGCGTGGTTTCAGGTGGAGTTTGACGGGGGTTTACCGCAGGGGATCTGCCAAGCGTGCTCCCAGGGCGCCCTCTCCGCGATACACTTCCGGCAACTCTGCAAGGAGGCACTCAACCAGTGGTCTGAAGCAGTGACCTTCATGAACCACCTCCAGTACCCGTCAGACGAGGACAAAACCTACTACGTCTTCTACAACACCGACCACCAGTCCGTGGTCGGCGACCAGAGCGAGAGGGCCGAAAGGAAGGAGATGGCGCTCCTCCGTCTCAACTCCAACTTTCAGAACGTCAAGGAAGAGAAGCCTGTAGAACAGAAGCATACCAAGAGGTCGCCTCGGACTGCGCGCTCTTGGCAATGTCCAGACTGCGCTAAGCAGTTCGCCCTAGCCACCCACCTGAACTTCCACTTGAAGAACAGCTCGAAGATAGCTTGCACCATATGCGGCGTGGTCGTCTACAAGAAGAAATTGGGACATCATCTCAGCAAAGGTCATGGGAGGACCGTCTTTAATTGCGACAAGTGCTACCAAGTGTTTGGAGATCAGATCTCTTTGAGTTCCCACATGAATAAAGCGCATGGAAGACCCTCTTACCAGTGCAAGGTCTGCGGGAACAGGTATCCGACGGACCGCGCGTTAGGTGCCCATATGACCACACACACCCTGTTCTACTGCAGTGTCTGTACCTCCAGCTTTGACAATCGCAAATGCTTCGTGCACCATCAGAAGCAGTGTCAGATGGATCCAACACCTCCCTCCAACGAGTACATATGCGACCATTGCGGAAACTCCTACACTAAGAAACCCTCGCTTCGGATACACATCATTCAGAAGCACTTGCATGTGCTGCCGTACGTTTGCGAGACTTGTGGCAAGCGCACTTCGACGATAGCGCACTTGAAGTCCCACGAGCAAGTGCACACGCTGGCCAGGAAGACCTTCGACTGCCATTGCGGGGCGAAGCTCCGTACGGAGCTAGGATTCCAGCTCCACCAGCGGATTCACACGGGAGAGCGCCCCTACGAGTGTACCGAGTGTGGTGATAAGTTCTTGTCGGCGTCTAGGAGACTGGACCATATCAAGAGGAGGCATAGGAGCACTAAGGACATGCCCCATGGGTGTACCATGTGCTCGGCGCGGTTCGTCAGGCCTTTCGAGCTCAAAAAACACTACCTGGCTGTCCATTCGCACACCATGACCCCTATCGACGAAGAGTCCCTCTGCCCCCGGGGCGCGTGTATTGCGTGCACGTCGGCCGCGCTCGCCGCTCAAGAGTTCCGCGTATTCGTACGGACCTCGCAGAACGCGTGGCAGAAGGCTATCACGGCCGTCAACGAAATACCCAAATCCCACGGACCCTCAGTCAAATCCCTCTGCGCCTTCATCAAGCCGGACAACTTCCAGATACACTCAGTCAAGGATTACACCGGTGGTGATAACAGGATGGTCCTGAGTAGGCTGAAGCAGCGGTTGACCAAGAAAGATTCCTCAGACGAGAGGAAACCGAGGATCACTAGAGCTGGACCGCCGTGTACGTGTCCAGATTGCGACAAGTCTTTCTACAGCCCGTTCTACCTCAGGTTGCATCTGAAGAATAGCGGTCATAAGGAAGCTTGTACGCACTGCGGGTCAGTCTTCTTCAGGGGCAAAGAGATTAAGGAGCATCTGGAAAAAGTGCACGGAGAGGTCGCTATCATATGCAAGCACTGCCCGACGATATTCTCCAGTGATATCCGCTTGAAGAAACATGTCCAGAAAGCTCATAAGGCTGGAGCGTGGACTTGTAGCGACTGTGGACGGAGTTTTCCAGGGAAAGCGTCGTTTGAACTCCATTCGCCAATGCATGCAGTGAGGACTTGCAGAGCGTGTGGTTCCCAGTTTACTAACAGGGGCTGCTATAGGGAGCATAGGGCTAAGTGCGAACCCGACGCCAGACCTAATACCGACTTGCTACCTCGAAGCAAACGCGCAAACATCCGCGACCCGGCTACCTTCACCTGTGACTATTGCGGCAAGACCTACTTCACCAGACCTCAATTAAAGAATCACATAATTTGGATTCACATGGACGTCAGGCCGCATCAGTGTCAGTGGTGTGGCAAAAGGTTCTACACGCCCGCACGCCTAGCGGAGCATTGCGTGGTGCATACGCGCGAGAGGAACTTTGAATGTGACATTTGTGGTGCGAAACTAGTGTCCAGGATGGCGGTGATCTACCACAGGCGCCGGCATACTGGAGAGAAGCCTTACGTGTGTGCGGACTGCGGCGAAGCCTTCATCTCTTCCTCGAGAAGGTTGGAGCATGCCAAGCGGAGACATGGCAAAGGACCACAGTTGCAATGCCTCCAGTGTCCAGCCACGTTCGTAAGGGGGCAGGAGCTGAAGAAGCATATGGAGAAGCTGCACAGGACCCAGGGTCAGATAGCTGGGCAGATCAAAAGTGCCGCGCTCGCTTGA
- Protein Sequence
- MAWFQVEFDGGLPQGICQACSQGALSAIHFRQLCKEALNQWSEAVTFMNHLQYPSDEDKTYYVFYNTDHQSVVGDQSERAERKEMALLRLNSNFQNVKEEKPVEQKHTKRSPRTARSWQCPDCAKQFALATHLNFHLKNSSKIACTICGVVVYKKKLGHHLSKGHGRTVFNCDKCYQVFGDQISLSSHMNKAHGRPSYQCKVCGNRYPTDRALGAHMTTHTLFYCSVCTSSFDNRKCFVHHQKQCQMDPTPPSNEYICDHCGNSYTKKPSLRIHIIQKHLHVLPYVCETCGKRTSTIAHLKSHEQVHTLARKTFDCHCGAKLRTELGFQLHQRIHTGERPYECTECGDKFLSASRRLDHIKRRHRSTKDMPHGCTMCSARFVRPFELKKHYLAVHSHTMTPIDEESLCPRGACIACTSAALAAQEFRVFVRTSQNAWQKAITAVNEIPKSHGPSVKSLCAFIKPDNFQIHSVKDYTGGDNRMVLSRLKQRLTKKDSSDERKPRITRAGPPCTCPDCDKSFYSPFYLRLHLKNSGHKEACTHCGSVFFRGKEIKEHLEKVHGEVAIICKHCPTIFSSDIRLKKHVQKAHKAGAWTCSDCGRSFPGKASFELHSPMHAVRTCRACGSQFTNRGCYREHRAKCEPDARPNTDLLPRSKRANIRDPATFTCDYCGKTYFTRPQLKNHIIWIHMDVRPHQCQWCGKRFYTPARLAEHCVVHTRERNFECDICGAKLVSRMAVIYHRRRHTGEKPYVCADCGEAFISSSRRLEHAKRRHGKGPQLQCLQCPATFVRGQELKKHMEKLHRTQGQIAGQIKSAALA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -