Basic Information

Insect: Cataclysta lemnata
Gene Symbol: -
Assembly: GCA_963931975.1
Location: OZ008365.1:5367127-5370182[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0049 0.37 11.9 0.3 1 23 74 97 74 97 0.90

2 16 1.8e-05 0.0014 19.5 1.0 1 23 125 148 125 148 0.96

3 16 0.00012 0.0091 16.9 0.1 1 23 169 191 169 191 0.98

4 16 0.0016 0.12 13.4 0.7 2 23 196 217 195 217 0.95

5 16 0.024 1.8 9.7 1.9 1 23 222 245 222 245 0.92

6 16 0.012 0.91 10.6 0.2 2 23 252 274 251 274 0.95

7 16 1.3 1e+02 4.2 0.6 1 23 331 354 331 354 0.96

8 16 0.033 2.5 9.3 2.3 1 23 382 405 382 405 0.91

9 16 0.42 32 5.8 5.5 1 22 426 447 426 449 0.89

10 16 0.0023 0.17 12.9 0.1 1 23 453 475 453 475 0.97

11 16 0.00013 0.01 16.8 0.7 1 23 480 503 480 503 0.97

12 16 0.011 0.85 10.7 2.4 2 23 510 532 509 532 0.97

13 16 4.9e-05 0.0037 18.2 2.0 1 23 539 562 539 562 0.98

14 16 0.28 21 6.3 8.0 1 20 568 587 568 590 0.95

15 16 3.5e-07 2.7e-05 24.9 1.6 1 23 596 618 596 618 0.99

16 16 2.2e-05 0.0017 19.3 4.5 1 23 624 646 624 647 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0049	0.37	11.9	0.3	1	23	74	97	74	97	0.90
2	16	1.8e-05	0.0014	19.5	1.0	1	23	125	148	125	148	0.96
3	16	0.00012	0.0091	16.9	0.1	1	23	169	191	169	191	0.98
4	16	0.0016	0.12	13.4	0.7	2	23	196	217	195	217	0.95
5	16	0.024	1.8	9.7	1.9	1	23	222	245	222	245	0.92
6	16	0.012	0.91	10.6	0.2	2	23	252	274	251	274	0.95
7	16	1.3	1e+02	4.2	0.6	1	23	331	354	331	354	0.96
8	16	0.033	2.5	9.3	2.3	1	23	382	405	382	405	0.91
9	16	0.42	32	5.8	5.5	1	22	426	447	426	449	0.89
10	16	0.0023	0.17	12.9	0.1	1	23	453	475	453	475	0.97
11	16	0.00013	0.01	16.8	0.7	1	23	480	503	480	503	0.97
12	16	0.011	0.85	10.7	2.4	2	23	510	532	509	532	0.97
13	16	4.9e-05	0.0037	18.2	2.0	1	23	539	562	539	562	0.98
14	16	0.28	21	6.3	8.0	1	20	568	587	568	590	0.95
15	16	3.5e-07	2.7e-05	24.9	1.6	1	23	596	618	596	618	0.99
16	16	2.2e-05	0.0017	19.3	4.5	1	23	624	646	624	647	0.96

Sequence Information

Coding Sequence: ATGCAAGATGTCATGTCAAATACTGTTTTCTCATTTTTAGGTGACACAAGGAGCACGCACCAGCCTATGTTTACTATAGGCAACACTACAGTCAAAGTGACCAAAGCCACATCATTGGCCGCTACCAGAGTATCCAATCCAATAGCTGATAGGAACAGCGCGGTCGCGCTGATCGCTAACACCAGCAAATCGTGTCCCTTCAAGCACTGGAACCAATTCTACAGGTGCTCATATTGCCCTAAACAATACCGAGACTTCCCGAAGTTGTATGAGCATGTAGCCGCGGCGCACAGCTCTATAAGCGAGAGGGAGATTAAGAGAGCCTTCGTGAAGACCGACAGAGACCAGAAGATCAAAATCAACTTCATGGACTTCGTTTGTAAAGTGTGTGATAAGTCGTTCGACAAATTTAAAGACTTGAAAGTGCATCTGAAAGAGGATCACAAGAAACTAGTGGATGTTGAGAATGACGGGGTGCTACCTTACAAGATATTGGACGATGTGTACGAGTGCTTGCTGTGCGGGGTCGCCTTTCAGAACTACACAGCGTTGAATAAGCACATCAACTCCCATTTCCCATACTTGGTTTGCAAGCAGTGCGGTCAGGGGTACACCACGGCTCATCGCTTGAGGCAGCACGTGGCGAATCATGGCGATCGGTCGCATAGTTGCGAATACTGCAGCAAAGCGTTCCCGACTCTATCTCGGAAGAAGGAGCATGTCACCAGAGTGCATATGAAGATAAAGAGGAATAAATGTCCAGTTTGCCCAGAGACCTTTGTCAAGTACTACGAGAAGGTTGAGCACTTGAAAAACGTTCATGGTGATACAAGCGTCGGCAGTTACGCTATAAGGCCTGTGGATGATGAGAAGCAAAACGAGAACTCTTTGAGCATCCTTCAGAAaacagagaagaagaagacaagtcGCGACACAGCTATCGCGATAATCCTCAACACGAACGTGTGTCCTTTCAAATTCAACGGTGCCTTTATGTGCCTGTACTGCCGTAGCCAATACCGTCTCATGGCCGACTTAGTGGAACACACTAACACGAACCACCAGAACGTAACCGAAATAGTGATCAAGAAGGCTATGACCCGTTTCGCTAAAGTTATCCCTATTAAGGTTAATGTCACGGATTATACTTGCAAGATATGCCACAATGAACTGTCTGACTTTGAAGACTTGAAGCACCATCTGGTAGGCAAGCACAAAGTAGACATTGATATTGAAAATGACGGTCTTATGGCTTACAATATCATGAAGGAAGAATACTGTTGCGTCAAATGCGGACTGAAATGCGAGAATTATAAAGAATTGAACAAGCATGCACACGACGTCCATTTTAACACGTACATTTGCGATCAGTGCGGCGTCGGTTTTGCCACGAAGGCAGGCCTCCATGGCCATGTCATATCGCACACGTCAGGCACTTACCCCTGTGAGATATGCGACAAGGTCTACCGCTCGCCCTGGTCTAAGCGACACCACGTCAAAATAACGCATCTCAACATTAACTTGAACAAATGCACTCACTGCTCGGAAACTTTCAAGGGGTACTACCAGAAATTGAAGCATATAGCGACTGTACACGGGGTCAAACGGTACAACTACAAATGCAGCTTCTGTACCAAAACGTTCTTGAGCAATTCCAATTTGAGGAATCATGAGAGGGTCGTGCACGCTCAAGGTCATAAGTACATGTGTGACCATTGCAACTATCACACTTATGACAAGCATTTGTTAAAGATGCACATGATATGTCACAGTGATGAGAAGAACTTTAAGTGCAGCGTGTGTGATAAGAGTTACGCTCGGAAGAAGACTTTGACTGAGCACATGAAGATACATAACAATGATAGGCGGTTCGTTTGTCAGTACTGCGACAGGGCGTTTGTCCAGAAATGCAGTCTAAAGGGACACATTAAGACTCATCATAGGGAGGTCCAGGGAATGGAGTGCTGA
Protein Sequence: MQDVMSNTVFSFLGDTRSTHQPMFTIGNTTVKVTKATSLAATRVSNPIADRNSAVALIANTSKSCPFKHWNQFYRCSYCPKQYRDFPKLYEHVAAAHSSISEREIKRAFVKTDRDQKIKINFMDFVCKVCDKSFDKFKDLKVHLKEDHKKLVDVENDGVLPYKILDDVYECLLCGVAFQNYTALNKHINSHFPYLVCKQCGQGYTTAHRLRQHVANHGDRSHSCEYCSKAFPTLSRKKEHVTRVHMKIKRNKCPVCPETFVKYYEKVEHLKNVHGDTSVGSYAIRPVDDEKQNENSLSILQKTEKKKTSRDTAIAIILNTNVCPFKFNGAFMCLYCRSQYRLMADLVEHTNTNHQNVTEIVIKKAMTRFAKVIPIKVNVTDYTCKICHNELSDFEDLKHHLVGKHKVDIDIENDGLMAYNIMKEEYCCVKCGLKCENYKELNKHAHDVHFNTYICDQCGVGFATKAGLHGHVISHTSGTYPCEICDKVYRSPWSKRHHVKITHLNINLNKCTHCSETFKGYYQKLKHIATVHGVKRYNYKCSFCTKTFLSNSNLRNHERVVHAQGHKYMCDHCNYHTYDKHLLKMHMICHSDEKNFKCSVCDKSYARKKTLTEHMKIHNNDRRFVCQYCDRAFVQKCSLKGHIKTHHREVQGMEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -