Clem022374.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008363.1:58280-71849[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.5 2.7e+02 2.9 4.9 1 23 246 268 246 268 0.98 2 23 0.0039 0.3 12.2 0.5 1 19 376 394 376 396 0.96 3 23 0.0039 0.3 12.2 0.5 1 19 569 587 569 589 0.96 4 23 0.0039 0.3 12.2 0.5 1 19 612 630 612 632 0.96 5 23 0.0039 0.3 12.2 0.5 1 19 655 673 655 675 0.96 6 23 0.0039 0.3 12.2 0.5 1 19 698 716 698 718 0.96 7 23 0.0039 0.3 12.2 0.5 1 19 741 759 741 761 0.96 8 23 0.0039 0.3 12.2 0.5 1 19 784 802 784 804 0.96 9 23 0.0039 0.3 12.2 0.5 1 19 827 845 827 847 0.96 10 23 0.0039 0.3 12.2 0.5 1 19 870 888 870 890 0.96 11 23 0.0039 0.3 12.2 0.5 1 19 913 931 913 933 0.96 12 23 0.0039 0.3 12.2 0.5 1 19 956 974 956 976 0.96 13 23 0.0039 0.3 12.2 0.5 1 19 999 1017 999 1019 0.96 14 23 0.0039 0.3 12.2 0.5 1 19 1042 1060 1042 1062 0.96 15 23 0.0039 0.3 12.2 0.5 1 19 1085 1103 1085 1105 0.96 16 23 0.0039 0.3 12.2 0.5 1 19 1128 1146 1128 1148 0.96 17 23 0.00032 0.025 15.6 1.8 1 23 1171 1193 1171 1193 0.98 18 23 0.1 7.7 7.7 0.7 1 23 1205 1228 1205 1228 0.96 19 23 0.00038 0.029 15.4 1.3 2 23 1239 1260 1238 1260 0.96 20 23 0.0023 0.18 12.9 1.4 1 23 1266 1288 1266 1288 0.95 21 23 0.00017 0.013 16.5 2.3 2 23 1295 1316 1295 1316 0.97 22 23 8e-06 0.00061 20.6 2.9 1 23 1322 1344 1322 1344 0.97 23 23 0.0045 0.34 12.0 0.0 1 22 1350 1371 1350 1371 0.96
Sequence Information
- Coding Sequence
- atggattCTGTATGTCGATTGTGCTGTTCTACGAAATTCGTGAACAACTATTTATTTGACGAAGAAAGTGCTCTTAACTTGAAAATGGAACTATTTTTACCTATTAAGGTAATGAAGGGGGATGAGCTGCCGCAGAAAGTGTGCAATCAGTGCAGCTGTAAAGTGAACGATATATATCAATTTTGTAATTTCGCTATAGAAACCCAAGACAGGCTTCGTGGTATGCTGCTTCAAGTTAATCAAAATTTTCATCAGTCCGTTGACTTAACTCTGACTAAACAAGAATCACTATTGCCTGTACCTTTGGAGCAGCTAAAAGTGAACCAAGAGACGCAGACAGAGGATTTGAACAGATTTCCAGACAGTGTTTTCAATTCAACTTCAAATTTGCAGCTTAAAGAGGAGCATGTATCTATTTCACCATCCATTATAAAGAGGGAAAGCTCAGTTGAGTATGATGCCCCTATACCATCAGATGACAGTGATGATTTATCGCTCattgttttgaaaaataaaaaaaagagccAGAAAATCAATACCAATGGTGAATTGCGTATGAAGAGgaacaagaagaagaaatcTAAACTGGGAGCTGTAGACATAACACAAACAGACCTAGCCTGCTTGGTTGAAAAACTTAAGGATGATGTGAAAAACCAATCAGAAAAGCCTGGTTGCAAACCGGTGTCCTTGGATGGGAAGAGTCTAAAGAAAGAACTGGAGGATGTGGAGATGTTCCAGTGCTGCATCTGTTTCAACCTGTTCTACTTGCGCAGTGACATGTTGCAGCATTACAGACGGCACGTGGACGAGCTGGAGGAGCGGGAGCCGCCGCCGGCGCCGCCGCTGGTCGACCAACGCTGCCCGCGCTGCCGCAAGGTATTGCCCCCTCTGGGCTTACTCGATTACTCGAGCAGGAGGGAGGCGCTCGCTGTAGTCCGACAAGTTGGGAGGGTCCGActagatgccagcgggggcgggcggtgCGCTGAGGCGCAGGAACCCGACGGTGGAGATGATGACggtggtgacgatgatgatgatggtggtgatgatgtgcAGAGCGTTGAGGCGGGCGCGTGGGCGGCGCACTGGGCGCGCCACTGGCAGCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACtcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTACGCTCATACTCATACACAcatcatacacatacatcacgcctctcTCCCTCAGCCGCGACCGCCGCCCCTACCGCTGCGCGCTCTGCGAGAAGACCTTCCGCAACCCGCACCAGATCCTCAAGCACGGTCAGACGCACAAGCCGGGCGAGCCGGAGCCGGCCATGAAGAAGTTCGTGTGCGACCTCTGTCCCGAGGGGTTCGTCTTCATGAGGTACCTGGTGTCGCACCGCGCGCGCTGCCACCCGGAGGCGGCGCACCGCGCGCTGAGCCTCCGCTGCGCGCAGTGCTCGCGCGCGTTCGCGCACCTCAACTCGCTGAGGCGGCACCTGCGCGCGCACTCGGGCGAGCGCAACTTCCTGTGCAGCGTGTGCGGCAAGGCGCTCTCCAGCCGCGAGCACCTCAAGTTCCACCTGCGCATCCACACCGGCTACAAGCCCAACGTGTGCAAGACCTGCGGCAAGGGCTTCGTGAAGAAGTGCAACCTGACCCTGCACGAGCGCGTGCACTCTGGCGAGAAACCACACGTGTGCTCGCACTGCGGGAAGGCCTTCAGCCAGCGCTCTACGCTCGTCATACACGAGAGGTACCACAGCGGCGCGCGGCCGTACGTCTGCAGCCTCTGCGGCCGCGGGTTCGTCGCCAAGGGGCTGCTCTCTATGCATCTCAAGACCACCTGCATCTAG
- Protein Sequence
- MDSVCRLCCSTKFVNNYLFDEESALNLKMELFLPIKVMKGDELPQKVCNQCSCKVNDIYQFCNFAIETQDRLRGMLLQVNQNFHQSVDLTLTKQESLLPVPLEQLKVNQETQTEDLNRFPDSVFNSTSNLQLKEEHVSISPSIIKRESSVEYDAPIPSDDSDDLSLIVLKNKKKSQKINTNGELRMKRNKKKKSKLGAVDITQTDLACLVEKLKDDVKNQSEKPGCKPVSLDGKSLKKELEDVEMFQCCICFNLFYLRSDMLQHYRRHVDELEEREPPPAPPLVDQRCPRCRKVLPPLGLLDYSSRREALAVVRQVGRVRLDASGGGRCAEAQEPDGGDDDGGDDDDDGGDDVQSVEAGAWAAHWARHWQRDRRPYRCALCEKTFRNPHQILKHGTLILIHIHHASLPQPRPPPLPLRALREDLPQPAPDPQARYAHTHTHIIHIHHASLPQPRPPPLPLRALREDLPQPAPDPQARYAHTHTHIIHIHHASLPQPRPPPLPLRALREDLPQPAPDPQARYAHTHTHIIHIHHASLPQPRPPPLPLRALREDLPQPAPDPQARRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGTLILIHTSYTYITPLSLSRDRRPYRCALCEKTFRNPHQILKHGQTHKPGEPEPAMKKFVCDLCPEGFVFMRYLVSHRARCHPEAAHRALSLRCAQCSRAFAHLNSLRRHLRAHSGERNFLCSVCGKALSSREHLKFHLRIHTGYKPNVCKTCGKGFVKKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVIHERYHSGARPYVCSLCGRGFVAKGLLSMHLKTTCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -