Basic Information

Insect: Cataclysta lemnata
Gene Symbol: -
Assembly: GCA_963931975.1
Location: OZ008351.1:4766395-4770685[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.5 5e+02 2.0 0.2 3 18 59 74 58 74 0.90

2 14 0.0015 0.12 13.4 4.8 1 23 138 160 138 160 0.98

3 14 0.00014 0.011 16.7 1.7 2 23 166 187 165 187 0.96

4 14 0.001 0.078 14.0 0.2 2 23 193 214 192 214 0.98

5 14 0.00011 0.0084 17.0 2.6 1 23 231 253 231 253 0.99

6 14 1.5e-06 0.00012 22.9 1.2 1 23 263 285 263 285 0.98

7 14 4.8e-05 0.0037 18.2 6.6 1 23 291 313 291 313 0.98

8 14 3e-05 0.0023 18.8 2.1 2 23 320 341 320 341 0.97

9 14 1.7e-07 1.3e-05 25.9 0.7 1 23 347 369 347 369 0.95

10 14 3.4e-06 0.00026 21.8 0.9 1 23 375 397 375 397 0.97

11 14 7.9e-07 6e-05 23.8 0.6 1 23 403 425 403 425 0.98

12 14 0.041 3.1 9.0 7.0 1 23 431 453 431 453 0.97

13 14 1.5e-06 0.00012 22.9 2.1 1 23 459 481 459 481 0.98

14 14 0.00055 0.042 14.8 0.6 1 20 487 506 487 509 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.5	5e+02	2.0	0.2	3	18	59	74	58	74	0.90
2	14	0.0015	0.12	13.4	4.8	1	23	138	160	138	160	0.98
3	14	0.00014	0.011	16.7	1.7	2	23	166	187	165	187	0.96
4	14	0.001	0.078	14.0	0.2	2	23	193	214	192	214	0.98
5	14	0.00011	0.0084	17.0	2.6	1	23	231	253	231	253	0.99
6	14	1.5e-06	0.00012	22.9	1.2	1	23	263	285	263	285	0.98
7	14	4.8e-05	0.0037	18.2	6.6	1	23	291	313	291	313	0.98
8	14	3e-05	0.0023	18.8	2.1	2	23	320	341	320	341	0.97
9	14	1.7e-07	1.3e-05	25.9	0.7	1	23	347	369	347	369	0.95
10	14	3.4e-06	0.00026	21.8	0.9	1	23	375	397	375	397	0.97
11	14	7.9e-07	6e-05	23.8	0.6	1	23	403	425	403	425	0.98
12	14	0.041	3.1	9.0	7.0	1	23	431	453	431	453	0.97
13	14	1.5e-06	0.00012	22.9	2.1	1	23	459	481	459	481	0.98
14	14	0.00055	0.042	14.8	0.6	1	20	487	506	487	509	0.94

Sequence Information

Coding Sequence: ATGTTTGGTGTAAATGAATCGTGCCGCACATGTATGAAGATCAAAATTACCTTGATAAACATTTTTGAACCTTTAAAAATAGATGGAAATTTGTGTGATACTCCTACTATAAACATGTTACAGGACTGTTTATCAATCCAAGCCTATAAAGATGATGGCTTACCTCAAAATATATGTGAGGAATGCGCCAAAACACttaattatttacacaatttCCGAAAACAAGCACTTAACGCAGAAAAAGAGTTTAAAACAATGATTGCAAATGACAACAAAGAACATGTAAACTTAGAgcaatatgtaataaaaaccGAAATAGATTTAAAAAGAGAAATTGATGAGACTTTTGAGACATACGAGGAATTTTCACCGGACATTATTGCCCCTAAAGTAGAGCCTAATGACAAATTATATGAATGTGATAAATGTCTAAAACATTATACTAGAAAAAGTAAATACCTCAAGCACTTAACAATCCATGATTTGCCTCTGTTAGAATGTTCATTTTGTGGAAAGACATTTCAGAAACAAACAACACTGGATAAACATCTTTTGAAACATTGCAAGAACTTTAACAAATGTAACATTTGCTTTATCAATTTTGACACTGAGCCTCTTTTGATGGATCACATGAAAATTCACTCTGGAATGgaaattaaaactgaaattgAAAATGAGGTAGACAATGAATATAAGTGCTCTGAATGTAACATGACATTTAGTAAACTAAGGTCCTTAGCAATGCacaaaaagaaacataaaaacaaagaGAAGGTTGGACAGTTGTTTAGATGCGATATCTGCCAAAAGGAATTTAGGTTAAAATCTCTTTTGAAACGCCATATAAGCATTCATAATACAGAACGTATGTTTCCTTGTAGTAAGTGCCATAAATGTTATACACGACTTGACCGATTACAGGACCATATGAAAACACATGATTCGGTTAAAGCCAATGTGTGTTCCTATTGTAGTAAAGCTTTCTCCCAACTATGCAGTTTAAAGGATCACTTACGAATACATACCGGAGAGACTCCATTCCTATGCTCTGAATGTGGTAAAGGATTTAACAACAGTTCCAATCTTCGCCAGCATATATTGAGACACTCTGGTGTCAAGGCGTTTGCTTGTTCCTTATGCCCCAAAACATTTACAACCAAAGgtCAGATGACAAGTCACATAACAACACACACTGGAGATCATCCATACGAGTGTGACCAATGCGGAGCTACATTCACTAAGCCAAGTTCACTAAAGAAACATAAACAGATACACTTAGGAGTAAGGCCATTTGCCTGTGAAACGTGCCATATGAGGTTTTCATGTAAAGATCATCTGATCCGTCATAATCGTATCCATACTGGAGAAAAACCTTACAAGTGTAAATACTGCGAGCGAGCTTTCTCACAGAGCAACGACCTTGTTAAACACACCAGACAACACGTGGGacaaaatgtttatcaGTGCACAGTTTGCGAAATGAGGTTCCGACTGAAGAGTGAGCTGAAACTGCATTATCCTGTTCACTATGGGGACGGAGAAAATGCAGCCAACTTGCTATCCGACAAAGAACATGTCGACCCAGTGCTAACAATTAAACCCGAAGATAAATTGAAGAGCAACGAAAACGAATTTGCCAAAGGCAGCCTGGACCAAATGATTACAATAACTATCAGCAGAAACGCGCTAGACAGAAACGGTTTGGACGAAAACGGCCTAGCTGGTgatattacgataaatatcaacCCGGAGGAGAGTTAA
Protein Sequence: MFGVNESCRTCMKIKITLINIFEPLKIDGNLCDTPTINMLQDCLSIQAYKDDGLPQNICEECAKTLNYLHNFRKQALNAEKEFKTMIANDNKEHVNLEQYVIKTEIDLKREIDETFETYEEFSPDIIAPKVEPNDKLYECDKCLKHYTRKSKYLKHLTIHDLPLLECSFCGKTFQKQTTLDKHLLKHCKNFNKCNICFINFDTEPLLMDHMKIHSGMEIKTEIENEVDNEYKCSECNMTFSKLRSLAMHKKKHKNKEKVGQLFRCDICQKEFRLKSLLKRHISIHNTERMFPCSKCHKCYTRLDRLQDHMKTHDSVKANVCSYCSKAFSQLCSLKDHLRIHTGETPFLCSECGKGFNNSSNLRQHILRHSGVKAFACSLCPKTFTTKGQMTSHITTHTGDHPYECDQCGATFTKPSSLKKHKQIHLGVRPFACETCHMRFSCKDHLIRHNRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHVGQNVYQCTVCEMRFRLKSELKLHYPVHYGDGENAANLLSDKEHVDPVLTIKPEDKLKSNENEFAKGSLDQMITITISRNALDRNGLDENGLAGDITININPEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -