Clem008032.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008344.1:13059308-13068571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0039 0.3 12.2 1.0 3 23 208 229 207 229 0.96 2 23 0.28 21 6.3 0.3 1 22 612 633 612 633 0.95 3 23 5.5 4.2e+02 2.3 0.3 1 22 674 695 674 697 0.82 4 23 0.013 0.98 10.5 1.2 2 21 707 726 706 727 0.94 5 23 3.3 2.5e+02 3.0 0.1 2 23 735 757 734 757 0.91 6 23 0.005 0.38 11.8 0.1 3 23 778 799 776 799 0.96 7 23 0.00038 0.029 15.4 2.4 1 23 805 828 805 828 0.95 8 23 1.1 83 4.5 0.0 1 23 854 877 854 877 0.89 9 23 0.0045 0.34 12.0 3.5 1 23 882 904 882 904 0.97 10 23 0.014 1.1 10.4 0.2 1 23 910 933 910 933 0.95 11 23 0.00084 0.065 14.3 1.3 1 23 946 968 946 968 0.98 12 23 0.00014 0.011 16.7 1.8 1 23 1017 1040 1017 1040 0.97 13 23 0.0036 0.27 12.3 1.9 1 23 1113 1136 1113 1136 0.96 14 23 0.0009 0.068 14.2 2.1 2 23 1162 1184 1161 1184 0.95 15 23 0.071 5.4 8.2 0.1 2 23 1190 1212 1189 1212 0.93 16 23 0.008 0.61 11.2 0.2 1 21 1256 1276 1256 1277 0.95 17 23 0.001 0.076 14.0 0.6 1 23 1287 1309 1287 1309 0.93 18 23 9.1e-05 0.007 17.3 0.3 2 23 1398 1420 1398 1420 0.93 19 23 2.7e-07 2.1e-05 25.3 1.4 3 23 1427 1447 1426 1447 0.98 20 23 0.0011 0.085 13.9 0.2 1 23 1466 1488 1466 1489 0.95 21 23 0.1 7.7 7.7 0.0 1 23 1510 1532 1510 1532 0.97 22 23 0.022 1.7 9.8 0.6 1 23 1538 1561 1538 1561 0.95 23 23 0.00021 0.016 16.2 0.4 1 23 1569 1592 1569 1592 0.96
Sequence Information
- Coding Sequence
- atGAGTGTAAATTACGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTACCTATTTTTCCTACCACCAGTTCGGATGAGTCGGAACCTCCCATTCTGGCCTCGAAAATAAAGGACTGTGTCTCTGTTCAGATAAGCGAGAATGACGACCTGCCAACTAATGTCTGCAAGAAATGTCTGGATAATGTCAATAACTGGCATATATTCAAATCAGTATGTGAGAGGACCCAAAACAAACTAGAGTTACTGGCCAAAAAAGATGAAAGCCAACTAGAAGAGGTACAAATAAAGAGTGAACCTTTGTCTGATGAAGCTTATGATGAAGGAGTGGTCATTGATGGCTCATACCCTGATAATGAGACTACCACAAATTCAAACAAGGTGCAGCCTGAAGGCCCACCAATACTGGCATCATTGGGACTCACACCGAGGAGTGATAAGGGTATGGAGAGCGAGAAAGATGCTGAGGATGAAGATGAGGAAGAGGTGCCTGAAAAAGTACAGCAATTTTCAAAGGTGCCGCATATGCCGGAGGTCTCGATTACAGTAATGCGGCCAACTGGTGAAACGTTACATGCTCGTCAAGGTATCCAACAACTTGCTTCCAAAGATTGCCTAGTATGCGGCCGCTCTTACAGATATTCACATAATGCCAGAAGGCATGAACTTACCGCTCATAGTTTTGATagatacacaaataaaattacacacAAAAAACAACATTCACGCATGCAGCCAAAACTAAGACCAAATCCTTTTAATCCTAAAGCACGGTTAATGCCAAACCCAATCAGCCATAAAATGCAATTAATGTCTAAACCAATACCAAACAAAATTGGTATAAATAAAGTTATCACTCCACCGAAACCGATATTAATTAAAGCGGCAAAAGTTAATCAAAATAACTTACCATATCCATTACGTATCAAAGCATTAAAAGAATTACAAATAAAGAAAAGGGAACCACAAATTTTAAAGACACTGCTTACGTCTAAACCTGAAGTCTTAGTCTCTGAACCTGAAATTATTAATTCTGGTCCAGAAAGCCCAGAAACTTTGATTTCCGAACCAGAAATAGCATCGTTCCAAGTGGAGACGATTTTATCTGAACCAGATGATACATACGATCACCAAACGGGTGATGAAGGTGACATGACTAATAGTCAAGGTCAACACTACGATACTGTTGACATGGAGTCTGacaatgaaattgaaattgcaCGGGAACAAGAAAACGAAGGAGATGAAGAAGACCAACCTATGGAGGAAGATGATAATTTGCATCATgatgaagaaaataatatagatgATGGGTTGTTGACTGAAAAAGACGATGCCGAAAATGGCGTCGAACATGAAGATAACATAGGCACAGATGAGAATGGTGAAGACAAAATAGATGATGAAACTGCTGAAGATGgcaatgataatgatgatggtaatgataatgatgaaatggAAAATGAAGAGCAAGATAATCATGACGATACTTTAGAAGACGACGAAGATCTTCCACCGATGGGAATAGCTCCCGTTGTTGAAATCAATGAAGATATGCAAAATTCTTATCACAGTGAACATAATGAAGAAGACGATGGCGCAGATACTTCAGAATTAAATGAAAACCCTGATGACGTTGATGGTATCAAAGAGATTGACCCAGACAAACTTTATGTAACCAAAACACAGCGcgattttatacataaatatcgtgatattattgaacaaattaatacaaaacgATGTCTTTGTTGCGACAGGGAACATCCACGTAGGAAAGCTGTTATACAGCATTTGCAAAAAAATGGAAATAAGGTACCGAAGCATACTTGTTATAATTGTGTTGTTACATTTGGGCACATTGGAGCTTTACTTAGCCATATGCGTTCTAATACTTGTACTAATCTTtggaaaataatatacaatgaaaatgGTATTACCGATGATTTAGTTTTGCAAGATCCATTGAACAACAAAGCTCAATACAAAGACATTTTTAATGCAAGGTCATACGCTTGTAAGCTATGCCCAGCAAAATTCCAgctaaaacaatttataatgaAGCACGTCTTAGACGTACACGAAGACGGGCAATCCCGTATACCACTCAATTGTGTCCATTGTAGGGCACGGTTCAAAGACAAGAGCTTGATAAAAAAACACATTCGCAACGGAGATTGTACAGTTTACATTTCTTGTGACATGTGCTCGGATAAGTTTAAAAACATACAGGATTTTAATGACCATGCGATGGCCGTTCATGCCGGCAGCTATGATCAGTCTGACAATCTGAACAAATGCGTCGACGAGAGACCTACGGATTGTCCAATATGTGGCAAGAAGAACACGAGCTACCCGAATTtggtcaaacatttaaaaattattcataatgAAGAGAAACCGCATTATTGCCAACACTGTGACATCAAATTCGAGCAAGCTACTGATCTTAACAAGCACATTTACGTGGAGCATTCTGATAGAAGTTTGGGTGTACAGACTATGGAACCAGACATGTCGCTCGTGAAAGAAGAAGCGGAGGAGTATCATTACTCTTGCACAGAGTGTAATGATATTTTCGAGACTGTCGACGCATGGACTGATCATCAGGTTGCTGAACACAATCAAGTCGCCCATCATTGTGACCAATGTGATAAGAAATTCTTGCGACCTTCTGAGCTTGCAGAGCATAAGAACACCCATTTGCGTGTGAAGTTTTATCCTTGTAGTGTTTGCAGTAATTCATACAGTACCCCTCAGAAGTTGTCCGAACACGTCCAACAGGCACATCCTGGAGTCGGAGTATATGCAGACACGATGTCTGAATTTTATTGCGACATCTGTATAAGATCATTCAAAAGCCGTCAAGCCTATTCAAATCATATGCGTATACACGCTAAAGTTCCAACAACCAATAGAAAACCAGGTGAACCAAAAGGATTTGCACCACAAATCATCGGTAAACCAATCAAACAGTTCCCAGTCCAGCAACTTAATGTAGTTCCATATAAACCAaattgtaatgttccaaatgCCCCATATTCGTGTGATATTTGTGGTAAGGGATTTATGcacaagaaaaatatttggaaacatAAAAAAGTGCTGCATGCCGACCTTGTAAATGATCGGAACGACAGCGAAGAGAATACTATGCACGCGTCGACTGAAGAAGATGAATACAACCAAGATGAAAATGGAGCCATTCTTTCTACACCACAGTTCAATAGTTTTAATTTCACTAATTTTAACAACTTACAACAACagcagcaacaacaacaacaacaacagcagcaacaacaacaacaactacAGGATGCAGTATCATTTTCTTGTGAACTTTGTTTTAAACGGTTCCCACTGAAAACGAGTTTATGGAAACATAAGCGTGCCAAACACGGAATTGTCAATATTAACACCGGCAGTACTGACACTCATGGTCAACCGGTTCCCAACGAAGCTGGTAACAGATCAAGTTGTACCATTTGTAAAATCACATTTTCAGACAAAAAATCCTATTATCGACACAGGAAAAACGTCCATAAATCTACGATACAAATGTGTAAAATATGTGGCAAGCCACTTAACTCCACATTGGAGTTGTACGAGCATCTAAAAGCTGCCCATGCCCGCGAGCTTCTCGGCTATAACGCCAACCAAGGTTCTAGTAAATTGCAGGAAGTGAAACAGGAATTAGAAATTGACTACGAAAATGACCAAGACTCAACAGACCCTAGTGTAGAGTATCAAGCTCGGTACCCCTGTGATACATGTGGGAAACAGTTTGTGGGATTGCTGGCCTTACAGAATCATCAATGCATCAATCAAGTTCAATCACAGCCGCAGACTTTTGATTGCGAAATCTGCCACAAAAGCTACACCTCAATAGCGGCACTGAAAAGTCATCGAGGTTGGCACCTGCGATCACCGGACGGCAAAGCTGCGGCTAACAACAGCGGGCTTTGGATGCCTCATAATAAAGTGACCAGTAAGGTCAGTAAACATGAAGTTGTCGACGCTGTGCAACTTGCTCGCGTTCAACACGCGACACCCACGACGGTAGCCAAGAGGAGGCTACCACCAGAAGTGGAGGTGACAGTTGTGAATCCCAACAAGAAAATGCGCTCAGACGATTCTGTGGAGTTGGACCAACAAAATTCGACATCGGGGGCCGATGACAGGTACTGTACAATTTGCGACAAGGAGTTCACGAAGCGCGCTGCCTACCAGCGGCACATGGATGAGGTGCACCAGCCCAATTCTGTTTTTTGTCCCGTATGTGACAAGAGTTTCACACGGAAATCGACGTTGCTTGTTCATATGAAGAAGCACTACGAAGGCGGGGAGGGCAGCTCGTCGGGCACTGCTTTGATGGAGGAGGAGAATTACGCGTGCGATTTGTGCGGAGCGCAGTTTGACACTGAGAGTGCTTTGAAGGGTCACCAGGCGAGGCACCACGGCGAGGAGTCTGGTGAGTCAGATGACGACGGAAGCGTGATGGTCGCGCAGCCTGGTGAGTTTACGTGCGGCCAGTGCGGCGACGGCGTGGCCACACCGCGCGATCTCATCGCCCACCGCGCCATGCACGCGACGCCCACCAAGTTCTTCTGTAACATCTGCAAGGTGTACTTTGCGAGAGCCCTGGACCTCTCGTCGCACACGCGGGCGAGGCACGCCGACAACGAGAAAGTCTTCTTCCCATGTGCCATGTGTGACCGTTTCTACATGAACAAGAAGAGTCTACAACGACACATCGAGATGGCGCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDESEPPILASKIKDCVSVQISENDDLPTNVCKKCLDNVNNWHIFKSVCERTQNKLELLAKKDESQLEEVQIKSEPLSDEAYDEGVVIDGSYPDNETTTNSNKVQPEGPPILASLGLTPRSDKGMESEKDAEDEDEEEVPEKVQQFSKVPHMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITHKKQHSRMQPKLRPNPFNPKARLMPNPISHKMQLMSKPIPNKIGINKVITPPKPILIKAAKVNQNNLPYPLRIKALKELQIKKREPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDDTYDHQTGDEGDMTNSQGQHYDTVDMESDNEIEIAREQENEGDEEDQPMEEDDNLHHDEENNIDDGLLTEKDDAENGVEHEDNIGTDENGEDKIDDETAEDGNDNDDGNDNDEMENEEQDNHDDTLEDDEDLPPMGIAPVVEINEDMQNSYHSEHNEEDDGADTSELNENPDDVDGIKEIDPDKLYVTKTQRDFIHKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGNKVPKHTCYNCVVTFGHIGALLSHMRSNTCTNLWKIIYNENGITDDLVLQDPLNNKAQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRIPLNCVHCRARFKDKSLIKKHIRNGDCTVYISCDMCSDKFKNIQDFNDHAMAVHAGSYDQSDNLNKCVDERPTDCPICGKKNTSYPNLVKHLKIIHNEEKPHYCQHCDIKFEQATDLNKHIYVEHSDRSLGVQTMEPDMSLVKEEAEEYHYSCTECNDIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQAHPGVGVYADTMSEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIIGKPIKQFPVQQLNVVPYKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMHASTEEDEYNQDENGAILSTPQFNSFNFTNFNNLQQQQQQQQQQQQQQQQQLQDAVSFSCELCFKRFPLKTSLWKHKRAKHGIVNINTGSTDTHGQPVPNEAGNRSSCTICKITFSDKKSYYRHRKNVHKSTIQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKLQEVKQELEIDYENDQDSTDPSVEYQARYPCDTCGKQFVGLLALQNHQCINQVQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPHNKVTSKVSKHEVVDAVQLARVQHATPTTVAKRRLPPEVEVTVVNPNKKMRSDDSVELDQQNSTSGADDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSSGTALMEEENYACDLCGAQFDTESALKGHQARHHGEESGESDDDGSVMVAQPGEFTCGQCGDGVATPRDLIAHRAMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -