Clem023822.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cataclysta lemnata
Gene Symbol
-
Assembly
GCA_963931975.1
Location
OZ008365.1:5362645-5366225[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.1 1.6e+02 3.6 1.0 1 23 32 55 32 55 0.93
2 20 0.047 3.6 8.8 0.3 2 23 78 100 77 100 0.94
3 20 0.0012 0.094 13.8 2.4 1 23 122 144 122 144 0.98
4 20 0.0071 0.55 11.3 1.6 1 23 148 170 148 170 0.98
5 20 0.086 6.6 7.9 0.2 1 23 175 198 175 198 0.94
6 20 8.7e-05 0.0067 17.4 1.8 1 23 204 227 204 227 0.97
7 20 0.29 22 6.3 1.8 1 23 234 257 234 257 0.92
8 20 0.00063 0.048 14.7 3.4 1 23 263 285 263 285 0.96
9 20 8.6e-07 6.6e-05 23.7 1.0 1 23 291 313 291 313 0.99
10 20 6.3e-06 0.00048 21.0 4.1 1 23 319 341 319 342 0.96
11 20 0.00059 0.045 14.8 0.5 1 23 412 435 412 435 0.90
12 20 8.9 6.8e+02 1.6 0.1 3 23 465 486 464 486 0.88
13 20 0.0027 0.21 12.7 2.0 1 23 508 530 508 530 0.98
14 20 0.0011 0.087 13.9 0.2 1 23 534 556 534 556 0.95
15 20 0.0025 0.2 12.8 0.1 2 23 562 584 561 584 0.94
16 20 0.00082 0.063 14.3 4.4 1 23 590 613 590 613 0.96
17 20 8.3e-05 0.0063 17.4 0.1 1 23 620 643 620 643 0.98
18 20 1.4e-05 0.001 19.9 1.5 1 23 649 671 649 671 0.97
19 20 1.5e-07 1.1e-05 26.1 1.2 1 23 677 699 677 699 0.99
20 20 8e-06 0.00061 20.6 5.5 1 23 705 727 705 728 0.96

Sequence Information

Coding Sequence
ATGGCGGACGAGAAACGCAGCATATTCAGACGGAATATAACTATTCTGATCAACTCCTGTACCGCTTACCCGTTCAAGTACAGGAAGGGGACCTACTTGTGCTTCTACTGCAAAAGCACTTTCCTCGAACCGGAAAAGCTTAGAGACCACAACCGATCCGAACACTTGGACGTACAAATCACCGTGAAACCGAGAAAGTATGAACCGATCAAAATGGACTTTACCAAGACAGTTTGCAAGCTGTGCGGCGTTGACGTTCCAGACTATAGTTGTTTGAAGACCCATTTGACGGTAGAACATGATAGAGTCATCGATTGCACGCACGGCGAATGCGTGCTGCCTTACAAGCTGAGCAAGGACGAGTACAGTTGCCAGATATGCGGCAAGCGCTACGAGATGTTCCTGAGCCTCCACAAGCACATGAACGAGCATTTCGGCCACTACATATGCGAGAGTTGCGGCAAGAACTTCGTGACGCACCAGCGCATGGTGAGTCACGCGAAGACGCACGAGCGCGGCATTTTCCCTTGCCGCAGCTGCAAGGAAACCTTTCCGACGTACGCCGCAATGTACACCCATGTGGCCAAAGTCCATCGCTCGAATAATAGGTACAAGTGTCCTGTTTGCGACGAGAAATTCTCCTCCTACAAGCACAGGGTAAAGCATTTGAATGTAGTCCACGGGGAGAAGACGGCTGTGTTCCCCTGTGCGCTTTGCCCGAAAGTCTTCGACTTGTGCAGTCGCAGGACTTCCCATATAAAGTTCCAGCATCTCCAAGAGAGGAACCATGTGTGTCACGAGTGCGGAATGAAGTTTTTCTCGAACTACGAGCTCCAAGAGCATTCTATTAAGCACAACGGAGAGAGGATCTACCAGTGCGACGTCTGCAAGAAGTCCTACGCTAGACTGAAGACTCTGAGGGAACACATGAGGATACATAACGATGATAGGCGGTTCGTGTGCTTTGTGTGCGGCCAGTCGTTCATTCAAAATTGCAGCCTTAAGCAACACATGAGAGTGCATCATCCCACGCATGTAAAGAACGACGGTCAACAAGACCCTTTACCACCAATCGACGAAAACCCAGCGGTAGGTAGCCAAAGTGGAACAAAAGCCAGGCTTGACGTGGAACAAGCAAAGAGCCTCAACGACGAATTGAGAGCGAGAAAGAAACAGACGCTGACTATTCTGGAAAACTCCAAGCTCTGCCCCTTTAGGTGGCTCAAAAACTTGTATATATGCTTCTATTGCGACCAGCAGTTCTCTGACCCAGCCGCCTTGAGGGAGCACCACGGTCTCAACCATCACTCTCATAcagtgaaagaaataaaggaCACGTTGACAAGACTGAAAAAGTACGAACTGGTCAAGGTGGATGTAACAAATGTCGCTTGCCGCCTCTGCGAAGATACCATCGCGGATCTGGCGGATCTGAAGAGCCATTTGTCGGTGAAACACAAAAAGAACATCGACCCTGGTTCCAGTGACGGCATTCTACCCTTCAAGGTGACCCTCAACGAATTCCAGTGCGCACTGTGCGACGAGCGGTACGCCGAGTTCAAGACTTTGAACCACCACATGAATTACCACttccagaatttcatttgcgaACAGTGCGGCACTGGTTTCATAACGCCGGAACGGTTGAGAACGCACGCCTTCTCGCACGAAACCGGATCCATTCCTTGCGATAGCTGCGACAAGGTGTTTAGGTCCAGTAATGCGCAAAAGGAGCATTATGCGACAGTCCACATGCAGGTTAAAAGACATAGGTGTCCTCACTGCCCGGAGACGTTTAGGAACTACTTTCAGAGGAACAAGCATATATCCAGCGTTCACGGGTTGAAGTTGAAAGAGTTCAAATGTGCAATGTGTCCAAGAGTGTTTACGCTCAGCGGGAAACTAGGGGTGCACATCAGGACAGTGCACCTGAAAGTCAAACGGCATTCCTGCGACGTCTGCGAATGGAAGTTTTACTCCAAGTCCGAGCTGAAAGAGCACATGATCAGACACGGCGGCGAAAGGAAGTATCAGTGTAACATTTGCAAGAAGGCGTACGCGAGGAAATATACGCTCAGGGAACACATGAGGATCCATGACAATGACAGACGTTTCGTATGCCCCATCTGTGGAAGGTCGTTTATACAGAACTGCAGTCTGAAACATCACACGAAGATCCATCATCCCGCGTCTTTGAACGCCAATTTGAAAATGTCCGAAGCCATATTTGGTTCTATTGCGTCGTCGTGA
Protein Sequence
MADEKRSIFRRNITILINSCTAYPFKYRKGTYLCFYCKSTFLEPEKLRDHNRSEHLDVQITVKPRKYEPIKMDFTKTVCKLCGVDVPDYSCLKTHLTVEHDRVIDCTHGECVLPYKLSKDEYSCQICGKRYEMFLSLHKHMNEHFGHYICESCGKNFVTHQRMVSHAKTHERGIFPCRSCKETFPTYAAMYTHVAKVHRSNNRYKCPVCDEKFSSYKHRVKHLNVVHGEKTAVFPCALCPKVFDLCSRRTSHIKFQHLQERNHVCHECGMKFFSNYELQEHSIKHNGERIYQCDVCKKSYARLKTLREHMRIHNDDRRFVCFVCGQSFIQNCSLKQHMRVHHPTHVKNDGQQDPLPPIDENPAVGSQSGTKARLDVEQAKSLNDELRARKKQTLTILENSKLCPFRWLKNLYICFYCDQQFSDPAALREHHGLNHHSHTVKEIKDTLTRLKKYELVKVDVTNVACRLCEDTIADLADLKSHLSVKHKKNIDPGSSDGILPFKVTLNEFQCALCDERYAEFKTLNHHMNYHFQNFICEQCGTGFITPERLRTHAFSHETGSIPCDSCDKVFRSSNAQKEHYATVHMQVKRHRCPHCPETFRNYFQRNKHISSVHGLKLKEFKCAMCPRVFTLSGKLGVHIRTVHLKVKRHSCDVCEWKFYSKSELKEHMIRHGGERKYQCNICKKAYARKYTLREHMRIHDNDRRFVCPICGRSFIQNCSLKHHTKIHHPASLNANLKMSEAIFGSIASS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-