Clem023682.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008365.1:4754042-4758193[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-09 4.8e-06 26.7 0.0 9 34 49 74 42 82 0.86 2 2 4.9 6.5e+03 -2.5 0.0 33 43 386 396 385 397 0.86
Sequence Information
- Coding Sequence
- atgtataataaagATCCCCGAACAGAGGTGGTCACCACTGACCCAGCGCCACCCAGGAAGCCAACCAAATGGCCCAGGAAGAAGAAAAGGGAGGAAATCACCCGAATCTACAAGAATTATACCCAACACGACATGGTGATGTGTCTCAAGGCGGTGAGAGAGGGCCAAATGAGCATATCCGATGCCTGCATGTACTATGGGGTGCCGAAGAAGACTGTCACCGCTAAGATACGGGAGAATCCTGTTGAGAAAGTGCCTGATTATGCGTGGAGAAACTCCCTAAACATACATACGGGAAGACCTCTTAAAGGAATACCCGAAGTTAAGAAACTTAGGGACAATGTACGGTCGGTACTTGAGAATTCTAATGCTACCCCCTTCAAAAGCCAAACAGGCATATTGTACCATTGCTACTTTTGCCCTGTAAGCTTCCCGGAAGCGAACCAACTCAAGGCACACACGCTAGACGCACACAAAGATGTGTCCAAAGCGTCGGAATTTAAAGTCGGTTTTGGCTTCAGCATCAAATTGGACATAACCCATTTGAAGTGCAAACTGTGTGGTGAAGGTATAGCGATGCTGGAGGATCTCATGGCTCATCTTAGGTTTAGGCACGCGGTTTTGATCCATAACGTCACCAACCAGATGGTCCCTTACAAGTTCGGAGGCAAGGAATTCAAATGTGTTAACTGCTCAAAGACATTCAACTACTTCAAGTTGCTAACGGAACATATGAGCGAGCATTATAGGAATTTCGAGTGCGAAATATGCTCCGCGCCATTCGTTACAAAGCAACGCTATAAGATGCACAAGGAACGACACAAGTATGGGGTTTTCTTCTGTCGATTGTGCCCTAAGAGCTTCACTAACTCGATGCGACGTCGAGACCACGAAAGGGTCGTCCATATAAACGAAAGTAGGACCCAAAAGTGTAGTTATTGCGTCGAGAAATTCGTGAGTGTCAGGCAGAAATTGGAACATGAGAACGCTGAGCATGGTGGTCCAGGCGTTATATATACGTGCCCTGATTGCCAGAAGGATTTCCAGGGACAAAAGGCTTTGAGCTCGCATATGAAGATAAAACACAGTAATCGTATGTCGGATGAAACGTATCAGTGCTGGGAATGCGATATGGCATTCCTTCGGAAAGATGCTCTGTCTAAGCATTTGGAGGGGCACTATTTTAGCGAAGGTTTCATCTGCGATGTGTGCTCTCTGAGGTTTCCGGATGGGAATAGGCTCCGGGAGCACAAGAGGAGCCTTTGTGGGGGAATCAAGTTTTGGTGCGACGTGTGTTCTAAGGGGTTCGGTTATAAGGGGTCTTGGAGGTGTCATATGATGGACCATGGGTCGTGGGAGGCGTTTGTACCGTGA
- Protein Sequence
- MYNKDPRTEVVTTDPAPPRKPTKWPRKKKREEITRIYKNYTQHDMVMCLKAVREGQMSISDACMYYGVPKKTVTAKIRENPVEKVPDYAWRNSLNIHTGRPLKGIPEVKKLRDNVRSVLENSNATPFKSQTGILYHCYFCPVSFPEANQLKAHTLDAHKDVSKASEFKVGFGFSIKLDITHLKCKLCGEGIAMLEDLMAHLRFRHAVLIHNVTNQMVPYKFGGKEFKCVNCSKTFNYFKLLTEHMSEHYRNFECEICSAPFVTKQRYKMHKERHKYGVFFCRLCPKSFTNSMRRRDHERVVHINESRTQKCSYCVEKFVSVRQKLEHENAEHGGPGVIYTCPDCQKDFQGQKALSSHMKIKHSNRMSDETYQCWECDMAFLRKDALSKHLEGHYFSEGFICDVCSLRFPDGNRLREHKRSLCGGIKFWCDVCSKGFGYKGSWRCHMMDHGSWEAFVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00279469;
- 90% Identity
- iTF_00279469;
- 80% Identity
- iTF_00279469;