Clem002847.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008339.1:20593681-20594040[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-10 3.9e-07 30.2 0.1 4 42 11 49 8 52 0.88
Sequence Information
- Coding Sequence
- ATGGCGCCGATTAGAAATTACACTCAACAACAAATGGCTAATGCCATTCAGAAAGTCAAGCAGGGCGTATCAGTTGCAGCGGCTGCGACTTTGTATGGTGTTCCTAGAATAACACTGTACAATAAAATAGTCGCCAAAACTCCTGAAGTTTGTAGGTTAGGACCAGCTACAATTCTCACAAGTGAAGAAGAGAATATGTTAAAGAAATGGATATTTTATATGGCAGATCATCACTTCCCCGTTACAAGAGACCATCTTTTGGACAGCGTTCAAAAgattatttctaataaaaaccttaaaaaaattCCATTCGTAAACAACAGACCTGGAAAGAAATGGTATCGTATCATTCTTTCTTAA
- Protein Sequence
- MAPIRNYTQQQMANAIQKVKQGVSVAAAATLYGVPRITLYNKIVAKTPEVCRLGPATILTSEEENMLKKWIFYMADHHFPVTRDHLLDSVQKIISNKNLKKIPFVNNRPGKKWYRIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00284478;
- 90% Identity
- -
- 80% Identity
- -