Clem013893.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008352.1:348205-368210[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.9e-10 2.5e-07 30.8 0.0 4 39 175 211 172 215 0.90 2 5 2.6e-11 3.4e-08 33.6 0.3 2 39 227 264 226 267 0.92 3 5 1.2e-13 1.6e-10 41.1 0.1 2 45 282 325 281 325 0.96 4 5 2e-18 2.7e-15 56.3 0.0 1 42 332 374 332 376 0.95 5 5 3.2 4.2e+03 -1.9 0.1 10 20 414 424 413 426 0.82
Sequence Information
- Coding Sequence
- ATGCCGATGCCGGGGCCAGTGGCGCGAGTGAAGCAGGAGCCGCCCGACCACGGCCCGGGGGAGGGCTACTTCCCCCACGGCTACTCGCCCGATCAGCTTCCTTCGCTGGGTCATTGTCAAGTTAAGATAGAAAATGATTGTCATCAGGAGGCAGCGGCCCATGCTCACCTCTTGCAACATTTACAAACAGGTCTAGAAGAGCTGTCGCTGCCGGCGCCGGCAGGCCCAGCCGCCACGCCAGTGTGCGTCAAGCAAGAGGCGGAGGCGCCTCCCGCTCTGATGCTGGAGAACCTCAAACCGGCCCCTCCTAACAACTCAGGGTCGACGTTGCTGGATCGACGCTTAGCGATGCTGAGTTCCACCGAAGTGCCTGACTCCTCCGAATTCGTGCCACTGCTAGCAGTGAAGGACGAACCTCTCTCTGAAGGAGAGCAACTGCAAACGAGCGGCGAGGACACGAGCGACTCGTGCAGCCAATCCGAGCCGGCGCCCCGCGTCAGCCCCAAGAGCTGGTCGCAGAGCGACATGGACGGCGCACTGCACGCGCTGCGCACCCACCACATGAGCCTCACCAAGGCATCGGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGGCGCCAAGTCCTGGAGCGAGGCGGACCTCAGGGGCGCCCTGCACGCGCTCAGGGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCCTATGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCGTGGCGGCGCGCGGACTTGGCGCGCGCGCTGCTCGCCATCCGCGCCGGGGCCAGCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACGGGAACATTGTATGGGCGGTGCAAGAGAGAAGGTATAGAGCTGTCCCGATCTAACCCTACTCCATGGTCTGAAGATGCAATGTGTGAAGCGTTGGAAGCTGTGAGGGTAGGACAAATGTCGATAAATCAAGCAGCCATCCATTACAACCTGCCATATTCCTCGCTGTATGGGCGATTCAAGAGATGCAAATATCAAATTCAGGGCCTCCAACCAATACAGCAAGACACGCAGAAGAGCACAGAGGTAGAACAGCAGAATCAAGTGCAGGACCTACATTACTACCACCAACAGCCAGAAGGCTATTCCCACTTACAAACGTATATGAACAGTCAGATGAGTATTAACGAGATGGGTTCGATGGAGGAGCACTACGCACAACATTATTACAACCAAAACTGTAACATAGTGACCAGTTGA
- Protein Sequence
- MPMPGPVARVKQEPPDHGPGEGYFPHGYSPDQLPSLGHCQVKIENDCHQEAAAHAHLLQHLQTGLEELSLPAPAGPAATPVCVKQEAEAPPALMLENLKPAPPNNSGSTLLDRRLAMLSSTEVPDSSEFVPLLAVKDEPLSEGEQLQTSGEDTSDSCSQSEPAPRVSPKSWSQSDMDGALHALRTHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGGAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALLAIRAGASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMCEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGLQPIQQDTQKSTEVEQQNQVQDLHYYHQQPEGYSHLQTYMNSQMSINEMGSMEEHYAQHYYNQNCNIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -