Cbif007492.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- stc_1
- Assembly
- GCA_963920755.1
- Location
- OY987195.1:20224511-20234937[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 2e+04 -4.7 3.4 6 10 331 335 328 335 0.69 2 14 0.18 1.8e+03 -0.8 0.2 4 10 361 367 360 367 0.95 3 14 1.7e-05 0.17 12.1 13.4 3 18 375 390 374 391 0.93 4 14 3e-08 0.0003 20.9 12.5 1 18 427 444 427 445 0.99 5 14 0.88 8.8e+03 -3.0 1.3 5 10 474 479 474 479 0.93 6 14 1e-09 1e-05 25.6 12.1 1 19 485 503 485 503 0.97 7 14 2 2e+04 -4.4 1.6 6 10 533 537 533 537 0.95 8 14 4.1e-08 0.00041 20.5 15.7 4 19 550 565 543 565 0.87 9 14 0.0029 29 4.9 11.2 1 11 605 615 605 627 0.90 10 14 6.3e-10 6.3e-06 26.3 14.7 1 18 632 649 632 650 0.98 11 14 2 2e+04 -4.3 1.8 15 18 679 683 678 684 0.51 12 14 0.00069 6.9 7.0 14.3 1 19 689 706 689 706 0.89 13 14 0.0001 1 9.6 19.2 1 17 742 758 736 765 0.77 14 14 0.012 1.2e+02 3.0 14.9 1 18 771 789 771 790 0.93
Sequence Information
- Coding Sequence
- ATGTCGTACTACAATAATTATCAACAAAACCCTCGGGAAAGGCCTCGAAGGTATAATGGCTCGAGTCAGAGCGAAAATTACTTCAATTCAGATAGTGCGTCCGGTTCTAACACTTCTAATGCTCCCTACGGATCCGGGTTTAACACATCAGCCCCTGAATTTGTTCCTCAACAAAGCCGAAGTGAGAATATGGGTCAAAATATCAACACTGGAGCAGTGCGAAAAAAGTACGACAAAAATTCATACAGCAGCCGTCGTAAAAACGGCTACAACAACTATCGCCAAGAAAATAGTGCCCCGCAAGAAAATACCCCAGAAAATAACTACAATCAGCTCGACTACGAGCCCAAACAACCACAAGAATCAAAGAAAAACAGCAACAAATCAGCGAATAAGTTCTACGGGTACAGAAACGACGCCCGAAAAATGAATAATCAATACGAAAATCACCCTAAATACAATCAAGACGAAAATTACACAGATCAACCATCAAAACATGATCCTAAGCCAGAAAAATACAACAACTACTACGAAAACAAACcccaatacaaaaaaaactacgaCCGCAATCAGTTCTACGATAGAGGCTACAACTTAAGCCGAAACAATTCAAAATTCTACACTCAAGCAGATCAATACGAAGATTTTGTTCAACAAACCCAAAACTACGATAATTCCCGCTACGACAAGAGAAGCgacaatttttataatgatTCCTACAGAAATAACGtcaattatcaaaaaaagaaGCCCCAAAACCGAAGAAACGCTCAGAGAGACAATAAAAAAGCACTGGATGCAGCATCGCAAAGAGAGCGTTTAGTCGACATGATAATGCGAAAAACGTTAGAATGTCTAGTATGTTGCGAGAAAATCAAAAACACGGATAAAGTCTGGTCTTGCAAGCAGTGTTATCATATTATGCATCTTAAATGCGTTATAGCTTGGGCCAAGAGCTCTAAAATAGAAAACGGCTGGAGATGCCCGGCGTGTCAAAACGTTTGCAGCGAAGTTCCAACAAAATACAGGTGCTATTGCGATAAAATGGTAGAGCCTCGCTCTGAAATAGGGTTGACACCACATAGTTGCGGTGATGTTTGCATGCGAAAGGGTCGTACTTGTGAGCATAATTGCACAATTCTGTGTCATCCAGGCCCCTGCCCAGATTGTAACGTTATAGTAACCCGTTTTTGTGGTTGCGGTAAAACTACACAGCAAGTTAAGTGTAACACCGATGTTGAAATAATTTGCCAAGGAAAATGTGAGAAAAAACTAGCTTGTGGTCTACATTTTTGTGAAGAAAACTGCCATTCTGGTGCCTGTCCTCCTTGTGGGGAGAAATTGCTGCAAGAATGTTTTTGCGGCAAGgttggTAGAAAAGTACCATGTGATTCCGAACACAAAGGGGCGCTTAAATATAAATGCGAAGACACATGTGACAAACTACTTTCGTGCGGAAATCACAAATGCACGAAAATTTGTCACGATGGTCCTTGCGAAATTTGCTCAAACGATGTTTCTATTGTTAAAACATGCCCTTGTGGTAAAACCTTATTAAAAACACCGAGAGTGTCTTGCTTAGATGATATTCCATGCTGcgaaaagactTGCAGAAAGGTCTTAAACTGCGGCCAACCAAATCTACCTCATGAGTGCCAATCCCTTTGTCATAAGGGACCATGCCCGCCGTGTCCTTTAACCACGGTAGTGAAATGCAGATGTGGACACATGGATAAAGAAATGCCTTGTTCAAAACTTACTACCAAGGCTGATGACGCTAGATGTGGAAAAAAATGCACTAAGAAACGCCTCTGCGGCAAGCACAAATGCAACCAACTGTGCTGCATCGAAATCGAGCATATTTGCCCCTTGCCCTGTAACCACACGTTATCTTGTGGTAAGCACAAGTGTGAGAGGACGTGCCACAACGGTAGATGTCCGCCTTGCATGGATACTAGCTTTGAAGAGCTGTATTGTGAGTGTGGAGCTAGTGTTATCTATCCGCCGGTTGCGTGTGGGACCAAGCCTCCACCGTGTGATAAGCCATGCTCCAGGCAACGGCCTTGTGGACATGAGGTTAATCATTCTTGTCATACTGGGCCGTGTCCGCCTTGTACTGTGTTGTGCAAGAGATGGTGTTatgGTAATCACGAACAACGCGCAGCGATCCCATGCCACCAAGAAAACTTCAGTTGCGGCCTCGCCTGTGGCAAAGAAATGTCCTGCAAGCGCCACAAATGCGTCCAAAAGTGCCACCCCGGCCCATGCCCTCCCAAATGCAAACAACCATGCTCCAAAACGCGCCCTCTATGCGGACATCCTTGTAACGCACAATGTCACCCACCTCCATGTCCAGACGTGACATGTCGACAGAAAGTTCAAGTCACTTGTTTATGTGGAATGCAAAAGGGATTCAGGAACTGCAACGATGTACTGGATGAGTTTAGAGCGCTTGAAATGGAGAAATTAAAGGATAAGATGGGGTCCTTGGGGAGTGGAAGTGACCATACTGTGGATTTGAGTGACATTTCCAAGGTTAAGAAaccaactgttttgaaaatCTTGGAGTGCACAGAAGAATGCAAAGTACTAGAACGCAACCGTCGTCTTGCTATAGGCCTACAAATACGTAATCCAGACATTTCGCAAAAACTAACGCCTAAATTCTCGGATTTTATGCGAAACTGGGCGAAAAAAGATCCACATTTCTGCCAACGTATACACGAAAAGCTAACCGATTTGGTTCAGCTAGCCAAGCAATCAAAGCAAAAGAGTCGTGCATACAGTTTTGAGAGTATGAATAGAGACAAACGTCATTTTGTGCACGAGTATTGCGAGCATTTCGGTTGCGATTCTGAAGCGTATGATCAAGAACCGAATAGAAATATTGTAGCCACTGCCATTAGGGATAAGTCTTGGTTGCCGAGCGTTAGTTTGCTTGAGTTTATGCAAAGAGAAAATGGGCAAAGGAAGGTTCCAGGGCCGGCTGTCTTACGTACTGGGGGGACTGGGCCCCTTAAAAACGAAAGTGTAACTTCGTTGAAACTTCCAGGGCGTTCGATACAACCTCAAAAAAGCAATGCAACTGATATTGATTATTTCAACGATCCACCAGTGTGA
- Protein Sequence
- MSYYNNYQQNPRERPRRYNGSSQSENYFNSDSASGSNTSNAPYGSGFNTSAPEFVPQQSRSENMGQNINTGAVRKKYDKNSYSSRRKNGYNNYRQENSAPQENTPENNYNQLDYEPKQPQESKKNSNKSANKFYGYRNDARKMNNQYENHPKYNQDENYTDQPSKHDPKPEKYNNYYENKPQYKKNYDRNQFYDRGYNLSRNNSKFYTQADQYEDFVQQTQNYDNSRYDKRSDNFYNDSYRNNVNYQKKKPQNRRNAQRDNKKALDAASQRERLVDMIMRKTLECLVCCEKIKNTDKVWSCKQCYHIMHLKCVIAWAKSSKIENGWRCPACQNVCSEVPTKYRCYCDKMVEPRSEIGLTPHSCGDVCMRKGRTCEHNCTILCHPGPCPDCNVIVTRFCGCGKTTQQVKCNTDVEIICQGKCEKKLACGLHFCEENCHSGACPPCGEKLLQECFCGKVGRKVPCDSEHKGALKYKCEDTCDKLLSCGNHKCTKICHDGPCEICSNDVSIVKTCPCGKTLLKTPRVSCLDDIPCCEKTCRKVLNCGQPNLPHECQSLCHKGPCPPCPLTTVVKCRCGHMDKEMPCSKLTTKADDARCGKKCTKKRLCGKHKCNQLCCIEIEHICPLPCNHTLSCGKHKCERTCHNGRCPPCMDTSFEELYCECGASVIYPPVACGTKPPPCDKPCSRQRPCGHEVNHSCHTGPCPPCTVLCKRWCYGNHEQRAAIPCHQENFSCGLACGKEMSCKRHKCVQKCHPGPCPPKCKQPCSKTRPLCGHPCNAQCHPPPCPDVTCRQKVQVTCLCGMQKGFRNCNDVLDEFRALEMEKLKDKMGSLGSGSDHTVDLSDISKVKKPTVLKILECTEECKVLERNRRLAIGLQIRNPDISQKLTPKFSDFMRNWAKKDPHFCQRIHEKLTDLVQLAKQSKQKSRAYSFESMNRDKRHFVHEYCEHFGCDSEAYDQEPNRNIVATAIRDKSWLPSVSLLEFMQRENGQRKVPGPAVLRTGGTGPLKNESVTSLKLPGRSIQPQKSNATDIDYFNDPPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -