Cbif014474.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987199.1:3773733-3778688[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.5 4.4e+02 1.8 0.8 2 21 266 285 265 288 0.85 2 15 0.035 1.6 9.5 2.3 1 23 340 363 340 363 0.97 3 15 0.55 25 5.7 0.0 3 20 371 388 369 390 0.93 4 15 0.00086 0.04 14.5 4.6 1 23 487 510 487 510 0.96 5 15 0.025 1.2 9.9 2.6 2 23 517 539 516 539 0.95 6 15 0.0019 0.087 13.5 4.4 1 21 641 661 641 662 0.95 7 15 0.014 0.65 10.7 0.9 2 23 674 696 673 696 0.94 8 15 1.4 65 4.4 0.5 1 23 699 722 699 722 0.95 9 15 0.074 3.4 8.4 0.2 3 23 729 749 727 749 0.96 10 15 4.8 2.2e+02 2.8 0.4 2 23 783 805 782 805 0.89 11 15 0.049 2.3 9.0 0.5 2 23 814 836 813 836 0.95 12 15 0.037 1.7 9.4 0.1 3 23 843 863 842 863 0.97 13 15 2.5 1.2e+02 3.6 2.0 2 23 1001 1023 1000 1023 0.94 14 15 0.64 30 5.5 0.1 2 23 1030 1052 1029 1052 0.93 15 15 0.67 31 5.4 1.0 1 23 1065 1087 1065 1087 0.95
Sequence Information
- Coding Sequence
- ATGGATACTAAACTGTGTAGAATTTGCGGTAAATTGGGCCCTAATTATGTGAATTTGTTTAATGTCGAAGGCTTCAAGAATAAGATCGAAACTTGCCTGCCGATTGTGGTTTCTGAGCATAGTTTGCTACCAGACACAATTTGCAATGAGTGCTTGGAAAATGTGAacaatttttatagttttataaagaattgttTGCAAAATATCATAATTTTGGAAGCTCAATACGACATAACAACAGAGtcatgtttaaaaacaaagcGAAAACTGGAAAAAGGGTGCCAAACCGACTTATCGAGACGAAACATCGAAGTCCAAACCGACAATTTATTAGACTTACTGCTAGAAAAAAGTTCCCAAgactataaatttaattttccactAACCACTTTTGCCgaccaaaaatttgaaaacgcTTCCATTCCACTGGTTGATTATGAAATCAACTCAAATAATGATTCTGAAGACGAAGAACACCCAGGAACACACACCCAAAATTGTgcgataaaaaaagaaaaagttgaCTCTGAAAAGAGTATAATTGAAGAAATAAACGAGCGTAAGCGAAAGTGCGACTTCATAGAGAATAATCCTACCAAAATATGCAAATTTGATTCGTCGAATAGACGGAAAAGCAAACAACCGAAAAAACTGGAGAAAAGTGGGAATGATTTGGGAGAAAATCCATGTTTTGAGTTACTTCCAGTTAAGGTTGAGAACGATTTTAATGAATTGCGAACCAGTCTACATGATCAACAAGAGatCGAAAAATCCTTTGCTACGCAACTATTTCAAACGTGTTTACTGTGTGAAACACAATTTTCTAGTCCTACAATTTTAGCCAATCACGTTTTTGAATGCCATGGCATAGATATGGCACAAATATTATCAATCGATAACTCTGAAAAACGCAAAAAGCTACCAAATCTACTCAAAATATCTGATCTCAAAAGGAGCGACAGTACAGAAGAGAACTTGTGCCCAATCGAAGAAAGTACAAATCCCAACGAACTTTTCCATAAATGTCCACATTGTCCACTTAAAATACGTCTAAAAACTGATCTGTACTCCCATATCAACTCAGAACATTGCAAACAATCAGGATTGCTTTGTGGCAATTGTTTTTATCAAGCTGCGTCACCAGCTAACCTTAAAAAGCATATGGAGGCGTGTCGCACACAAGCCACGCCCAGAACTAAGTTTACCTGTACCGTATGCGAATACGGCGaggaaaatttcaaaatattggaAAACCATGTTTTGCTCCATGAATTTTTGTTGGATGAGTGTAAAAGAGAGTTTAGAATGTTTGATCCTGCGTATTATATCGTTGAGAATCATTTGGAGAATGAATCGCAATCGTCTTTATCAAAAACTCTACAATGTACAGAATGCAACGAAAACAACTTAAGTTCATTTCGAGAGTTTAGCGAGCACCGTAGAAGCGTTCATTCAATATTTCACTGTGATCTATGCAACAAATTCTACGGTCGGAACTCACATTTATGGAAACATGTAAATAGACTTCATAAAGGACACCCTAGCATTACATGTCAGCTATGTTACAAAACAAGCGCAAGTAAATACCATTTAATGCAACACTTCAACAAGATACACAGTATTAAACCACAAAAACTAACAAACGGAGATGCGAACCTTGATTTCATGAACCAAAAATTTGAACCGTTTGACTTCCAATCAGTTAAACAAAGTTTCatgcgtgaaaaaatgaaccaaatcGACTTGAAAGTAGaggatattaataattttgagGAAAACACCAGCTCCTCCAAAACAGACGATGATATCGACAACGATAAGGCGATAAAGATCGAAAACGCTCCAAAAGAAATTGATCTCTCGTCTAACCTATACACTAACATCATTACAAATTACACTCCACCCCCAAATGAAGGCGCGTTTAAGTGTCCAAAGTGCACTAAAGCCTTTCACAAAAAGACCCTActcaaaaaacacaaaaagaaCTGTCGGCCACGATTACAAAAAGACCTCCTAACTCGCTGCAAATCCTGCGCTAGAATCTTCAAAGACCGTCAAAGCCTAGCCAAACACCTAATAAACTACCATTCCGTCTACGAATGCGAGATATGCGCACAGAAAGTACAATCCAAATGCGAAATAGTCGCTCACATACGATTTACACACCAAAAATGTCACTTATTCTGCAAGCTATGCGGCAACATCCTCAGAAACTTGGCTGACCTGACTGAGCACGTGAAAAACCACGCTGAATCATACGTATGCCAATTCTGCGCTGATCTCCTACCGTCTAAAATCAAACTCAAAATGCACATCTTGAGTCTGCACCGTAAGATATTATCTCTATCATGCGGGATATGTCTGAAGTTGTTCGAAACGCAACACATTTTACGTGATCACGTTACCTTGGTGCACAAGTCTGACCTAAAACCGTGCGTTTCTTGCACGGTTTGTGGCAAGAATTACGGTTCCAAGTGGAAAACATTTGACCACATTAATAAGTCACATGGACGCATTTTTAAAGCTTGTAAGATTTGTTTGGAGGTTTTTGACACTGAGGTTGAGCTACAGGAGCACTCAACTACGCATGTCATGCCTCAGAAAACAACTGTTAGTAACGTAATTACTACGTTGAGCAACGTAATGCCTGAGAATTTGATTGAAAGCGATACCGAAACTAGTTCTAGCGATAATGATGCTAATAAAAAGGTATCACTTCTGGAGAAACGCTTAACGTGCTCTAAAACTGATACAAAACCTCCTGTTTTTGACTTTCTGGACTCTAAGCCCCTTAATAACGTAGCCAAACCTTTCGAAAATGAACAGAAGCCCATTAAAGTCGAGCCTAAGACACCTAAGATAACAAAAGCATCCAAAACCGACTGCAAAGTCCTAAACCCAGTCAAAATCAAAGCAGAGCTCAAATCAGAAGACGATTATACGCACAGCGTATCGCATACGTCCAAGCGTACCGTCTACGTCAACAGTGACACTCCCTCAGTCTGCGAAATATGTTACAAAACATGGCCAGCCAAAAAACACCTCTGGCAGCACTACATCCGTTGTCACAAAAACGTAGCCGCTACCGTTTGTGGGATTTGCCTCAAGACGAATCCAGACTACGCCAGCTTGCAGCGCCATCTAATGCTAAACCACCCAACCTTACTCCACGGACAAGGTTTTGGCTCTAACTTCATTTGCAGAATATGCGGACGCTACCACAACGCTAGTAGTAAACTCAAGTTACATATGGTTATACATGAAAACTTTGATTGGTCGCTGTTGGAAAACGGTTCAATAAGCGTCAAAAGTGAAGTTATAAAACAAGAAATCAACTACGACAGTCTTATAGAGCAAGTGGAGTGCTCATCTGAATCAGAAAGCGATTCGGAAGAACCACAAAACAACGTTCCGAAGAGTAGTTCATATGAAACCGACTCAAGCACGGCAAAAAACGCGTCCAGCAGCTCAAGCAGCTCAGAAACTAACGAAAACACAAGTGACGATGACACTGCGCATGCGCCTGAGCGTGACGTCATTCAAGACGCAGACTCTAACCTATTCAGACCTGACGTTTTGTTGCAAAGCACTGAAGTTGGCCATGAGTTTGATCACAACGGCATTGTTTTAGCGCCTGATGACGCGTTTATTGAGCAAGCTGACAGTTTCCAAGATGGCGCCCAGTTGTCAGCTGATTCGCGCGTTAGTAATTCGACAAATGGTGCGTTTTCGATGCAGGAAAATGATTCAAATTCAAGTAATGGTAGTGTTCTTTTGGGGAATGTTTTGAAATCTGATAAATTATTGGATTCTGCGATTAAAAGTATAACGTATGATTACGAAGCTGATATTAAAACTGAAATAGTTGATGATTATTGCGATTTGCAAATGCAGAATTTGAATGATAATGAACTGGAATCTGCAGTGGGgagtattttgtaa
- Protein Sequence
- MDTKLCRICGKLGPNYVNLFNVEGFKNKIETCLPIVVSEHSLLPDTICNECLENVNNFYSFIKNCLQNIIILEAQYDITTESCLKTKRKLEKGCQTDLSRRNIEVQTDNLLDLLLEKSSQDYKFNFPLTTFADQKFENASIPLVDYEINSNNDSEDEEHPGTHTQNCAIKKEKVDSEKSIIEEINERKRKCDFIENNPTKICKFDSSNRRKSKQPKKLEKSGNDLGENPCFELLPVKVENDFNELRTSLHDQQEIEKSFATQLFQTCLLCETQFSSPTILANHVFECHGIDMAQILSIDNSEKRKKLPNLLKISDLKRSDSTEENLCPIEESTNPNELFHKCPHCPLKIRLKTDLYSHINSEHCKQSGLLCGNCFYQAASPANLKKHMEACRTQATPRTKFTCTVCEYGEENFKILENHVLLHEFLLDECKREFRMFDPAYYIVENHLENESQSSLSKTLQCTECNENNLSSFREFSEHRRSVHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLMQHFNKIHSIKPQKLTNGDANLDFMNQKFEPFDFQSVKQSFMREKMNQIDLKVEDINNFEENTSSSKTDDDIDNDKAIKIENAPKEIDLSSNLYTNIITNYTPPPNEGAFKCPKCTKAFHKKTLLKKHKKNCRPRLQKDLLTRCKSCARIFKDRQSLAKHLINYHSVYECEICAQKVQSKCEIVAHIRFTHQKCHLFCKLCGNILRNLADLTEHVKNHAESYVCQFCADLLPSKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVTLVHKSDLKPCVSCTVCGKNYGSKWKTFDHINKSHGRIFKACKICLEVFDTEVELQEHSTTHVMPQKTTVSNVITTLSNVMPENLIESDTETSSSDNDANKKVSLLEKRLTCSKTDTKPPVFDFLDSKPLNNVAKPFENEQKPIKVEPKTPKITKASKTDCKVLNPVKIKAELKSEDDYTHSVSHTSKRTVYVNSDTPSVCEICYKTWPAKKHLWQHYIRCHKNVAATVCGICLKTNPDYASLQRHLMLNHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMVIHENFDWSLLENGSISVKSEVIKQEINYDSLIEQVECSSESESDSEEPQNNVPKSSSYETDSSTAKNASSSSSSSETNENTSDDDTAHAPERDVIQDADSNLFRPDVLLQSTEVGHEFDHNGIVLAPDDAFIEQADSFQDGAQLSADSRVSNSTNGAFSMQENDSNSSNGSVLLGNVLKSDKLLDSAIKSITYDYEADIKTEIVDDYCDLQMQNLNDNELESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -