Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987198.1:3327351-3362809[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0019 0.09 13.4 1.7 1 21 639 659 639 660 0.95

2 15 0.82 38 5.2 8.5 2 23 674 695 673 695 0.96

3 15 0.0019 0.09 13.4 1.7 1 21 997 1017 997 1018 0.95

4 15 0.82 38 5.2 8.5 2 23 1032 1053 1031 1053 0.96

5 15 0.0019 0.09 13.4 1.7 1 21 1352 1372 1352 1373 0.95

6 15 0.82 38 5.2 8.5 2 23 1387 1408 1386 1408 0.96

7 15 0.0019 0.09 13.4 1.7 1 21 1723 1743 1723 1744 0.95

8 15 0.82 38 5.2 8.5 2 23 1758 1779 1757 1779 0.96

9 15 0.045 2.1 9.1 4.0 1 23 1782 1804 1782 1804 0.97

10 15 0.43 20 6.1 0.3 10 23 1814 1827 1812 1827 0.90

11 15 0.00034 0.016 15.8 6.0 1 23 1833 1855 1833 1856 0.94

12 15 0.0069 0.32 11.7 5.3 1 23 1861 1883 1861 1883 0.96

13 15 0.00018 0.0085 16.7 6.0 1 23 1889 1911 1889 1911 0.98

14 15 0.00034 0.016 15.8 6.0 1 23 1917 1939 1917 1940 0.94

15 15 0.0018 0.084 13.5 6.7 1 23 1945 1967 1945 1967 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0019	0.09	13.4	1.7	1	21	639	659	639	660	0.95
2	15	0.82	38	5.2	8.5	2	23	674	695	673	695	0.96
3	15	0.0019	0.09	13.4	1.7	1	21	997	1017	997	1018	0.95
4	15	0.82	38	5.2	8.5	2	23	1032	1053	1031	1053	0.96
5	15	0.0019	0.09	13.4	1.7	1	21	1352	1372	1352	1373	0.95
6	15	0.82	38	5.2	8.5	2	23	1387	1408	1386	1408	0.96
7	15	0.0019	0.09	13.4	1.7	1	21	1723	1743	1723	1744	0.95
8	15	0.82	38	5.2	8.5	2	23	1758	1779	1757	1779	0.96
9	15	0.045	2.1	9.1	4.0	1	23	1782	1804	1782	1804	0.97
10	15	0.43	20	6.1	0.3	10	23	1814	1827	1812	1827	0.90
11	15	0.00034	0.016	15.8	6.0	1	23	1833	1855	1833	1856	0.94
12	15	0.0069	0.32	11.7	5.3	1	23	1861	1883	1861	1883	0.96
13	15	0.00018	0.0085	16.7	6.0	1	23	1889	1911	1889	1911	0.98
14	15	0.00034	0.016	15.8	6.0	1	23	1917	1939	1917	1940	0.94
15	15	0.0018	0.084	13.5	6.7	1	23	1945	1967	1945	1967	0.96

Sequence Information

Coding Sequence: ATGTTAACTGACGAAGAAAGATTAAACGATTCGTTAAAAATAAGTAGTAAAACCTGCAGGCAGGGAACTATCTGTCAAGAAATGCTCCGAACAAAAAACCTTTGCAGAATATGTCTAACTAAAAGTGACCAAGTGTTATCGTTAGATGAGGAATTGGAACGCACTgccaggcaccgacataggtCGAAGCCGGGCCCGAATAATGCTATCTCAATTTTTAACGCCTTAGAATATGTTCTTGCAGAAAAATTAAACAAATCGAAAGCTTATTCTCAAGTAATATGCAGCGTTTGCATAGGCTCACTTAAAATAGCCTatgatttaaaaacacaaattgtTGAGTCGGAAAAGGCAACAGCAAGTCTGCTAAACAACAGCGAGACGCAAGAATTACCTGAAAGAGTCCAAGTGGAAATTAGTGATATCCGAGGTGATACCTATGTAAATAATGCTGTCGAACTTGCAGAGaaccaaagaaaatattttgattcaaATCCCTTTATTATTATGAAAGAAGAAGAGGAAATAAGCTACGTTTCAGATGATTTAAATGACCAGGTCAGCCCCGAAACAACTTGCAAAGGAAATGAAGAGCTTAAACATCAGGAAACTGCATTAACCATTCaagAACTCGATAATGCTTCTACTTGGTGCGATGATATTAAAATGGAATTTGAAGATTGCGACTTGAGCCAACTTAAAGTGGAACCTGAAGAATGCCATCTTCCACTAGTAAAACATGTAACGGTTTTATTATCCATTAAAAAGTGTCATAACTGCAAAGGTATGTTTAGTGTAGAGGAGTACATGCAACACACGCACGGCAACGGGGGCTGCTTGAATGTCTCAGGGGCAGAGCACGAACCCAAGATATTCAAAGTATCAGATAagttagaatatgtcaatgCAACTGATGCCATACCTGAGCCTGCAAAGTCCGATACCGATAACAATAAAACTCTTAATACCGATCTGTGTGACGAAAAACCAGCAGAATTTATTTGTGCCAaGCAGGGAACTATCTGTCAAGAAATGCTCCAAGCCAAAAGCCTTTGCAGAATATGTCTAACCAAAAGTGACCAAGTGTTATCGTTAGATGAGGAATTGGGCCCGAATAATGCTATCTCAATTTTTAACGCCTTAGAATATGTTCTTGCagaaaaaTTAAACAAATCGAAAGCTTATTCTCAAGTAATATGCAGCGTTTGCATAGGCTCACTTAAAATAGCCTatgatttaaaaacacaaattgtTGAGTCGGAAAAGGCAACAGCAAGTCTGCGAAACAACAGCGAGACGCAAGAATTACCTGAAAGAGTCCAAGTGGAAATTAGTGATATCCGAGGTGATACCTATGTAAATAATGCTGTCGAACTTGCAGAGAAccaaagtaaatattttgattcAAATCCCTTTATTATTATGAAAGAAGAAGAGGAAATAAGCTACGTTTCAGATGATTTAAATGACCAGGTCAGCCCCGAAACAACTTGCAAAGGAAATGAAGAGCTTAAACATCAGGAAACTGCATTAACCATTCAAGAACTCGATAATGCTTCTACTTGGTGCGATGATATTAAAATGGAATTTGAAGATTGCGACTTGAGCCAACTTAAATTGGAACCTGAAGAATACCATCTTCCACTAGTAAAACATGTAACGGTTTTATTATCCACTAAAATGTTGTGTCATAACTGCAAAGGTATGTTTAGTGTAGAGGAGTACATGCAACACACGCACGGCAACGGGGGCTGCTTGAATGTCTCAGGGGCAGAGCACGAACCCAAGATATTCAAAGTATCAGATAagttagaatatgtcaatgCAACTGATGCCATACCTGAGCCTGCAAAGTCCGATACCGATAACAATAAAACTCTTAGAACCGATCTGTGTGACGAAAAACCAGCAGAATTTATTTGTGCCAAGTGTTTGAAAAGTTTTACTTCCAAATGCAGTTTAATAAAGCATATTAAAGATCAGGAAAAGAATAAACTTCATACTGAACTAAAGTTTTGCTATTGTCAACACTGTTCTTATAGAACAACAGATGCGTTGTGTTTAAAGCGACACATGTTAAAACATACGGCTTATGCTTGCAAGTCGTGTCACTATAAAACTAGAATATGTCTAACTAAAAGTGACCAAGTGTTATCGTTAGATGAGGAATTGGGCCCAAATAATGCTATCTCAATTTTTATGGCCTTAGAATATGTTCTTGCagaaaaaTTAAACAAATCGAAAGCTTATTCTCAAGTAATATGCAGCGTTTGCATAGGCTCACTTAAAATGGCCTatgatttaaaaacacaaattgtTGAGTCGGAAAAGGCAACAGCAAGTCTGCTAAACAACAGCGAGACACAAGAATTACCTGAAAGAGTCCAAGTGGAAATTAGTGATATCCGAGGTGATACCTATGTAGGCTATGTAAATAATGCTGTCGAACTTGCAGAGAAccaaagtaaatattttgattcAAATCCCTTTATTATTATGAAAGAAGAAGAGGAAATAAGCTACGTTTCAGATGATTTAAATGACCAGGTCAGCCCCGAAACAACTTGCAAAGAAAATGAAGAGCTTAAACATCAGGAAACTGCATTAACCATTCAAGAACTCTATAATGCTTCTACTTGGTGCGATGATATTAAAATGGAATTTGAAGATTGCGACTTGAGCCAACTTAAATTGGAACCTGAAGAATACCATCTTCCACTAGTAAAACATGTAACGGTTTTATTATCCACTAAAATGTTGTGTCATAACTGCAAAGGTAGGTTTAGTGTAGAGGAGTACATGCAACACACGCACGGCAACGGGGGCTGCTTGAATGTCTCAGGGGCAGAGCACGAATCCAAGATATTCAAAGTATCAGATAagttagaatatgtcaatgCAACTGATGCCATACCTGAGCCTGCAAAGTCCGATACCGATAACAATAAAACTCTTAGAACCGATCTGTGTGACGAAAAACCAGCAGAATTTATTTGTGCCAAGTGTTTGAAAAGTTTTACTTCCAAATGCAGTTTAATAAAGCATATTAAAGATCAGGAAAAGAATAAACTTCATACTGAACTAAAGTTTTGCTATTGTCAACACTGTTCTTATAGAACAACAGATGCGTTGTGTTTAAAGCGACACATGTTAAAACATACGGCTTATGCTTGCAAGTCGTGTCACTATAAAACTAGAATATGTCTAACTAAAAGTGACCAAGTGTTATCGTTAGATGAGGAATTGGGCCCAAATAATGCTATCTCAATTTTTATGGCCTTAGAATATGTTCTTGCagaaaaaTTAAACAAATCGAAAGCTTATTCTCAAGTAATATGCAGCGTTTGCATAGGCTCACTTAAAATGGCCTatgatttaaaaacacaaattgtTGAGTCGGAAAAGGCAACAGCAAGTCTGCTAAACAACAGCGAGACACAAGAATTACCTGAAAGAGTCCAAGTGGAAATTAGTGATATCCGAGGTGATACCTATGTAAATAATGCTGTCGAACTTGCAGAGAAccaaagtaaatattttgattcAAATCCCTTTATTATTATGAAAGAAGAAGAGGAAATAAGCTACGTTTCAGATGATTTAAATGACCAGGTCAGCCCCGAAACAACTTGCAAAGAAAATGAAGAGCTTAAACATCAGGAAACTGCATTAACCATTCAAGAACTCTATAATGCTTCTACTTGGTGCGATGATATTAAAATGGAATTTGAAGATTGCGACTTGAGCCAACTTAAATTGGAACCTGAAGAATACCATCTTCCACTAGTAAAACATGTAACGGTTTTATTATCCACTAAAATGTTGTGTCATAACTGCAAAGGTAGGTTTAGTGTAGAGGAGTACATGCAACACACGCACGGCAACGGGGGCTGCTTGAATGTCTCAGGGGCAGAGCACGAATCCAAGATATTCAAAGTATCAGATAagttagaatatgtcaatgCAACTGATGCCATACCTGAGCCTGCAAAGTCCGATACCGATAACAATAAAACTCTTAGAACCGATCTGTGTGACGAAAAACCAGCAGAATTTATTTGTGCCAAGTGTTTGAAAAGTTTTACTTCCAAATGCAGTTTAATAAAGCATATTAAAGATCAGGAAAAGAATAAACTTCATACTGAACTAAAGTTTTGCTATTGTCAACACTGTTCTTATAGAACAACAGATGCGTTGTGTTTAAAGCGACACATGTTAAAACATACGGCTTATGCTTGCAAGTCGTGTCACTATAAAACTAGGCAGGGAACTATCTGTCAAGAAATGCTCCAAGCCAAAAGCCTTTGCAGAATATGTCTAACCAAAAGTGACCAAGTGTTATCGTTAGATGAGGAATTGGGCCCGAATAATGCTATCTCAATTTTTAACGCCTTAGAATATGTTCTTGCagaaaaaTTAAACAAATCGAAAGCTTATTCTCAAGTAATATGCAGCGTTTGCATAGGCTCACTTAAAATAGCCTatgatttaaaaacacaaattgtTGAGTCGGAAAAGGCAACAGCAAGTCTGCTAAACAACAGCGAGACGCAAGAATTACCTGAAAGAGTCCAAGTGGAAATTAGTGATATCCGAGGTGATACCTATGTAAATAATGCTGTCGAACTTGCAGAGAAccaaagtaaatattttgattcAAATCCCTTTATTATTATGAAAGAAGAAGAGGAAATAAGCTACGTTTCAGATGATTTAAATGACCAGGTCAGCCCCGAAACAACTTGCAAAGGAAATGAAGAGCTTAAACATCAGGAAACTGCATTAACCATTCAAGAACTCGATAATGCTTCTACTTGGTGCGATGATATTAAAATGGAATTTGAAGATTGCGACTTGAGCCAACTTAAATTGGAACCTGAAGAATACCATCTTCCACTAGTAAAACATGTAACGGTTTTATTATCCACTAAAATGTTGTGTAATAACTGCAAAGGTATGTTTAGTGTAGAGGAGTACATGCAACACACGCACGGCAACGGGGGCTGCTTGAATGTCTCAGGGGCAGAGCACGAACCCAAGATATTCAAAGTATCAGATAagttagaatatgtcaatgCAACTGATGCCATACCTGAGCCTGCAAAGTCCGATACCGATAACAATAAAACTCTTAGAACCGATCTGTGTGACGAAAAACCAGCAGAATTTATTTGTGCCAAGTGTTTGAAAAGTTTTACTTCCAAATGCAGTTTAATAAAGCATATTAAAGATCAGCAAAAGAATAAACTTCATACTGAACTAAAGTTTTGCTATTGTCAACACTGTTCTTATAGAACAACAGATGCGTTGTGCTTAAAGCGACACATGTTAAAACATACGGCTTATGCTTGCAAGTCGTGTCACTATAAAACTAGGAATGGAACTGCTCTGAAGAGACACATGTTTACTCATTCTGGAAAGAAAccacatgcttgccaATGTAACCGAACAAGTGATCTTAAGAGACATATGCTAACACATACTGGTGAAAACCCGcatgcttgccagtattgTGATTATAGATGTATTACTAGAAGTAATCTTAATATTCATATGTTAACACATCATGGTGACAAGCCGcatgcttgccagtattgTGATTATAGATGTACTACTTCAAGCCGTCTTAATATTCATACGATGACACATACTGGGGAAAAGCCGCATGTTTGCCAGTATTGTGATTATAGATGTAACCGAACAAGTGATCTTAAGAgacatatgttaacacatactggtgAAAAGCCGCATGCTTGTCAGTATTGTGATTATAGATGTATTACTAGAAGTAATCTTAATATTCATATGTTAACACATCATGGTGACAAGCCGcatgcttgccagtattgTGATGTTAAATGTACTACTGCAAGTCATTTTAAGAGACATATCTTAACACATACTGGAGAGAAGCCGTTAAAACGTTTTGGAAATAAGTATCGTGCATAA
Protein Sequence: MLTDEERLNDSLKISSKTCRQGTICQEMLRTKNLCRICLTKSDQVLSLDEELERTARHRHRSKPGPNNAISIFNALEYVLAEKLNKSKAYSQVICSVCIGSLKIAYDLKTQIVESEKATASLLNNSETQELPERVQVEISDIRGDTYVNNAVELAENQRKYFDSNPFIIMKEEEEISYVSDDLNDQVSPETTCKGNEELKHQETALTIQELDNASTWCDDIKMEFEDCDLSQLKVEPEECHLPLVKHVTVLLSIKKCHNCKGMFSVEEYMQHTHGNGGCLNVSGAEHEPKIFKVSDKLEYVNATDAIPEPAKSDTDNNKTLNTDLCDEKPAEFICAKQGTICQEMLQAKSLCRICLTKSDQVLSLDEELGPNNAISIFNALEYVLAEKLNKSKAYSQVICSVCIGSLKIAYDLKTQIVESEKATASLRNNSETQELPERVQVEISDIRGDTYVNNAVELAENQSKYFDSNPFIIMKEEEEISYVSDDLNDQVSPETTCKGNEELKHQETALTIQELDNASTWCDDIKMEFEDCDLSQLKLEPEEYHLPLVKHVTVLLSTKMLCHNCKGMFSVEEYMQHTHGNGGCLNVSGAEHEPKIFKVSDKLEYVNATDAIPEPAKSDTDNNKTLRTDLCDEKPAEFICAKCLKSFTSKCSLIKHIKDQEKNKLHTELKFCYCQHCSYRTTDALCLKRHMLKHTAYACKSCHYKTRICLTKSDQVLSLDEELGPNNAISIFMALEYVLAEKLNKSKAYSQVICSVCIGSLKMAYDLKTQIVESEKATASLLNNSETQELPERVQVEISDIRGDTYVGYVNNAVELAENQSKYFDSNPFIIMKEEEEISYVSDDLNDQVSPETTCKENEELKHQETALTIQELYNASTWCDDIKMEFEDCDLSQLKLEPEEYHLPLVKHVTVLLSTKMLCHNCKGRFSVEEYMQHTHGNGGCLNVSGAEHESKIFKVSDKLEYVNATDAIPEPAKSDTDNNKTLRTDLCDEKPAEFICAKCLKSFTSKCSLIKHIKDQEKNKLHTELKFCYCQHCSYRTTDALCLKRHMLKHTAYACKSCHYKTRICLTKSDQVLSLDEELGPNNAISIFMALEYVLAEKLNKSKAYSQVICSVCIGSLKMAYDLKTQIVESEKATASLLNNSETQELPERVQVEISDIRGDTYVNNAVELAENQSKYFDSNPFIIMKEEEEISYVSDDLNDQVSPETTCKENEELKHQETALTIQELYNASTWCDDIKMEFEDCDLSQLKLEPEEYHLPLVKHVTVLLSTKMLCHNCKGRFSVEEYMQHTHGNGGCLNVSGAEHESKIFKVSDKLEYVNATDAIPEPAKSDTDNNKTLRTDLCDEKPAEFICAKCLKSFTSKCSLIKHIKDQEKNKLHTELKFCYCQHCSYRTTDALCLKRHMLKHTAYACKSCHYKTRQGTICQEMLQAKSLCRICLTKSDQVLSLDEELGPNNAISIFNALEYVLAEKLNKSKAYSQVICSVCIGSLKIAYDLKTQIVESEKATASLLNNSETQELPERVQVEISDIRGDTYVNNAVELAENQSKYFDSNPFIIMKEEEEISYVSDDLNDQVSPETTCKGNEELKHQETALTIQELDNASTWCDDIKMEFEDCDLSQLKLEPEEYHLPLVKHVTVLLSTKMLCNNCKGMFSVEEYMQHTHGNGGCLNVSGAEHEPKIFKVSDKLEYVNATDAIPEPAKSDTDNNKTLRTDLCDEKPAEFICAKCLKSFTSKCSLIKHIKDQQKNKLHTELKFCYCQHCSYRTTDALCLKRHMLKHTAYACKSCHYKTRNGTALKRHMFTHSGKKPHACQCNRTSDLKRHMLTHTGENPHACQYCDYRCITRSNLNIHMLTHHGDKPHACQYCDYRCTTSSRLNIHTMTHTGEKPHVCQYCDYRCNRTSDLKRHMLTHTGEKPHACQYCDYRCITRSNLNIHMLTHHGDKPHACQYCDVKCTTASHFKRHILTHTGEKPLKRFGNKYRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -