Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987198.1:3262969-3266115[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.58 27 5.7 2.6 2 23 112 134 111 134 0.95

2 16 6.3 2.9e+02 2.4 0.6 2 23 163 185 162 185 0.93

3 16 0.0032 0.15 12.8 5.0 1 23 303 326 303 326 0.96

4 16 0.081 3.7 8.3 2.6 1 23 330 353 330 353 0.96

5 16 0.0091 0.42 11.3 3.0 1 23 402 424 402 424 0.98

6 16 0.19 8.8 7.2 2.5 2 23 448 470 447 470 0.90

7 16 0.00046 0.021 15.4 0.8 1 23 531 554 531 554 0.98

8 16 0.021 0.95 10.2 1.7 1 23 589 612 589 612 0.96

9 16 0.02 0.93 10.2 3.4 2 23 649 671 649 671 0.95

10 16 0.045 2.1 9.1 6.7 1 23 813 836 813 836 0.97

11 16 0.0023 0.11 13.2 3.5 1 23 843 866 843 866 0.95

12 16 0.0089 0.41 11.3 3.9 1 23 872 895 872 895 0.96

13 16 0.14 6.4 7.6 3.4 1 23 902 925 902 925 0.94

14 16 0.0038 0.17 12.5 1.8 2 23 931 953 931 953 0.95

15 16 0.1 4.7 8.0 7.6 1 23 959 981 959 982 0.95

16 16 8.3e-05 0.0038 17.7 6.5 1 23 989 1012 989 1012 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.58	27	5.7	2.6	2	23	112	134	111	134	0.95
2	16	6.3	2.9e+02	2.4	0.6	2	23	163	185	162	185	0.93
3	16	0.0032	0.15	12.8	5.0	1	23	303	326	303	326	0.96
4	16	0.081	3.7	8.3	2.6	1	23	330	353	330	353	0.96
5	16	0.0091	0.42	11.3	3.0	1	23	402	424	402	424	0.98
6	16	0.19	8.8	7.2	2.5	2	23	448	470	447	470	0.90
7	16	0.00046	0.021	15.4	0.8	1	23	531	554	531	554	0.98
8	16	0.021	0.95	10.2	1.7	1	23	589	612	589	612	0.96
9	16	0.02	0.93	10.2	3.4	2	23	649	671	649	671	0.95
10	16	0.045	2.1	9.1	6.7	1	23	813	836	813	836	0.97
11	16	0.0023	0.11	13.2	3.5	1	23	843	866	843	866	0.95
12	16	0.0089	0.41	11.3	3.9	1	23	872	895	872	895	0.96
13	16	0.14	6.4	7.6	3.4	1	23	902	925	902	925	0.94
14	16	0.0038	0.17	12.5	1.8	2	23	931	953	931	953	0.95
15	16	0.1	4.7	8.0	7.6	1	23	959	981	959	982	0.95
16	16	8.3e-05	0.0038	17.7	6.5	1	23	989	1012	989	1012	0.97

Sequence Information

Coding Sequence: ATGATTAACAACAATGAACCTAATATTAAGAAGGAAGTAGAGGACGACATTAATGAGCAACTACTTCAAAACGTTGGTGAAGATCTTTTGATCAAGAACGAAGAAATTGATATTAAGAAAGAAATCACCGAGACGCTTAATAAAAACTTGGAATATTCACTTGTAAATAAGGACATAATAGAACTAGAACACGATTATTGTAAAATGATATTTGGCAATGTTATAAGAAACCATGTTACCCCTACACATAACCTACAAAATGAGCAAATACCCAGCACGGATATTTTACCTTCTCCTTCACAGAAATCCATTAATAAAGTAGCAAAAATGTTACAATGCGAACTCTGTGACTTCAAGACAGCATTTAGACATGGAATGAAAAGACATGTAACCACTAAACATAACAAACTAAACAGGAAAGTACTCAGCACAGATATATTACCTTCTACTTCACATGGATTCATAAATAAGAAAGACAAAATGTTAAACTGCGACTTTTGTAAGTTTAAGAGCGCATCTAACAAAGGTATAAAAATACATATAACCATAAAACATAACGCACAAAACAAAGAAGAACATGGCACAGATGTTTTACTTTCAAATGAATCTGTTACTAAAAACGTTCATGAATATGATAACACCAACAAAACGGATAACAACGAAACTAGAGTTAAAGAGGAGGAGGAAATAGATGAAGACATAGATGCGCAATCAGAAAATGACCCAGAATTCTTAGTTTTAGAAGAAGGTTCTACTGATGACGAAGAAATTAATACAGAGGAAGAAGTCACAGAAACGAATAACGACGATTGCAAACATGTTTGTGATAAATGTAGTTACAAGACTAACTTTAAACATTGTTTTGTGCAACATATGGACAGAAGTCACAACGATGAAAGTGTCACATTTTCGTGTGATCACTGCGACTATTCAACCTATtctagatttaatttaaagtcccatttaaattataaacataaaagTTTATATTGTTGTGAAAATTGTAACTACACAAGTGGTGAAAAACGAAATCTAACTCTTCACATAGACAGAAAGCATAATGATAAAAGTGTCACATATTGTTGTGAACATTGTGAATACACAAATCATTCTGAATATGCTTTAAATTTCCACATTCGCATGAAACATAATAAAAGGAATAACAAGAATGACTTAAGTAAACAGAATAATGGCAGTAAAATATATTCATGTAATCAATGTGACTATACTGGTACCTCtaagttttatgttttgaaaCATCGACGAAAACATAAGGGTGCACATAACAtgataaacaaacaaattagGAAAGTATCCAAAGATAAGCTATTAAAAGCGTTAAAATGTGACTACTGTGACTTCAAGAGCTTCTTTTCCAGAGGCCTGAAGAGACATGTTACCAGGAAACATAACCTACAAGATAAACAAGATAACTTAACTTCTACACCAGTTAAACTCGAGGAAATCGAAGAAAATCCTGCCATTAAGGAAGAAGCTTTGGATATTGCAAGACATTTAGACCTAAATCAGGATGAAACAAATGAAGAACAACCTATATGTAAGGAAAACTTAAATGATGCGACAAAACCATATAAATGCCTCAATTGTGACTTTAGCACCAAATATAGAGAGGGTTTAAACAGACATATAGAAACTATTCACAACGATGGTAGTGTGACTTATTCCTGCGATTATTGTAACTACAAGAACATCTCCATATACTATTTAAAACATCATGTACATCTACAACATGAAGGCACTATTTATGCTTGTAATAAATGCGACTATAAAAGTGGGCGAAAATTTGACGTTCAGCAACACATGACCAGAAGACATAACAACGGTAATGTCAAAGTTCATTGTGATAAATGCACCTATACAACTACTTGTCATGCAAACTTGTTTCAACATGTTTGGTCACAACATCGTAAACATACTATTCGTCGTTGTCGTAAATGTGATTACAAATCAGGCCatgcaattaatttaaaaaaacatatgagATTCATGCATAAGGAAGAGAATTATGAATTGTTTTGTTATCATTGTGACTACATAGGAACgtctttaaaaaacatacgGATGCACAAGTataaaaaacattatccaaaagtTATGCCTAGAAAACGTAAGAATGTTCCCTCTACACATAACCtacaagtttcaaaaacagACATCTTAACTTCTACTTCACGTAATAACACCAACAATGCTATGACTAACTACAATGAAACTAGAgttaaaaaggaaataaatGACGACAATGAACAGCAActaaatccaaatgcagacgTTTTGGTTAAAAACGAAGAACTTGACATTAAGGACTCTAATGAAATATTAATAGTACGACGAAAAGGCATAAAAAAACGTGTAATAACTCGAAGACGCCCATATCGAAAAAGAAACCCTCATCCAGATCCTATAGGAACAGTTTATAAATGCCATCATTGTGACTTTACAACAAAGTCAAAGCACAGTCTTCCAGCGCACATAGAAAGAAGACATACTTCCGATAAATCCGCTTATTCGTGTAATGAATGTAACTACTCTACTCACACCAAAAGTAACTTAAGCGTTCACAAAAAAGCTAAACACAATCCAAAAGAAATTCACCGCTGTAACAGTTGTGACTACACTTCAACTTTCAAAGGTTCTCTAAGAAAGCACATAGATAGAAAACATAACGAATCCAATGTCACATATTCCTGTGATAAATGCAAGTATACAAGTGGCTCAAAATACAATTTCCTAACACATAAACTACAAAAACATACAGGGACCATGCGTTCTTGTCAAGAATGTGAATATAAAAGCGCTGATTCAAGTAACTTCAAACACCACATGGATAGAGTGCATAATCACAGTGTCACTTATTCTTGCGACCATTGTGACTATACTAGtcacaataaaataaaccttaaacagCACAATTTAAAACACCACGTTTCAAAGAACGATGTTCATCGTTGTCATAAATGTCCAAAAAggtttgcaagaaaattgGAACTTCGGAaacacataaataaaaaacatggaGAAAGTAGTGATACTAGTAGTGATAGTGATTCTAGTAGTGATGTCAACActaaaacagaaaataaaGATGCCTCAACGAAAGAAAAAACGCTTAATAAtgcttcataa
Protein Sequence: MINNNEPNIKKEVEDDINEQLLQNVGEDLLIKNEEIDIKKEITETLNKNLEYSLVNKDIIELEHDYCKMIFGNVIRNHVTPTHNLQNEQIPSTDILPSPSQKSINKVAKMLQCELCDFKTAFRHGMKRHVTTKHNKLNRKVLSTDILPSTSHGFINKKDKMLNCDFCKFKSASNKGIKIHITIKHNAQNKEEHGTDVLLSNESVTKNVHEYDNTNKTDNNETRVKEEEEIDEDIDAQSENDPEFLVLEEGSTDDEEINTEEEVTETNNDDCKHVCDKCSYKTNFKHCFVQHMDRSHNDESVTFSCDHCDYSTYSRFNLKSHLNYKHKSLYCCENCNYTSGEKRNLTLHIDRKHNDKSVTYCCEHCEYTNHSEYALNFHIRMKHNKRNNKNDLSKQNNGSKIYSCNQCDYTGTSKFYVLKHRRKHKGAHNMINKQIRKVSKDKLLKALKCDYCDFKSFFSRGLKRHVTRKHNLQDKQDNLTSTPVKLEEIEENPAIKEEALDIARHLDLNQDETNEEQPICKENLNDATKPYKCLNCDFSTKYREGLNRHIETIHNDGSVTYSCDYCNYKNISIYYLKHHVHLQHEGTIYACNKCDYKSGRKFDVQQHMTRRHNNGNVKVHCDKCTYTTTCHANLFQHVWSQHRKHTIRRCRKCDYKSGHAINLKKHMRFMHKEENYELFCYHCDYIGTSLKNIRMHKYKKHYPKVMPRKRKNVPSTHNLQVSKTDILTSTSRNNTNNAMTNYNETRVKKEINDDNEQQLNPNADVLVKNEELDIKDSNEILIVRRKGIKKRVITRRRPYRKRNPHPDPIGTVYKCHHCDFTTKSKHSLPAHIERRHTSDKSAYSCNECNYSTHTKSNLSVHKKAKHNPKEIHRCNSCDYTSTFKGSLRKHIDRKHNESNVTYSCDKCKYTSGSKYNFLTHKLQKHTGTMRSCQECEYKSADSSNFKHHMDRVHNHSVTYSCDHCDYTSHNKINLKQHNLKHHVSKNDVHRCHKCPKRFARKLELRKHINKKHGESSDTSSDSDSSSDVNTKTENKDASTKEKTLNNAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -