Cbif015099.2
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987199.1:10230216-10234047[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.041 1.9 9.3 0.4 1 20 241 260 241 262 0.95 2 13 1.8 82 4.1 1.1 2 23 706 728 705 728 0.85 3 13 0.014 0.65 10.7 0.7 3 21 738 756 737 757 0.92 4 13 0.14 6.5 7.6 5.3 2 19 767 784 767 789 0.92 5 13 1.8 82 4.1 0.2 2 23 798 820 798 820 0.91 6 13 0.06 2.8 8.7 0.2 1 23 831 852 831 852 0.97 7 13 2.1 96 3.9 1.6 2 23 868 890 867 890 0.92 8 13 4.1 1.9e+02 3.0 2.5 2 23 938 960 937 960 0.84 9 13 3.4 1.6e+02 3.2 1.3 1 23 970 992 970 994 0.82 10 13 0.00054 0.025 15.2 1.1 2 20 1032 1050 1031 1052 0.93 11 13 0.00093 0.043 14.4 0.4 2 23 1084 1105 1083 1105 0.97 12 13 0.0033 0.15 12.7 1.5 2 23 1111 1134 1110 1134 0.90 13 13 0.00073 0.034 14.8 0.6 1 23 1151 1174 1151 1174 0.93
Sequence Information
- Coding Sequence
- ATGTCGGTGTACATAAACACATGCTGTGCTTGTCTGAGCGACGAGTATGTTACCGAAATTAGCGAATTTGATGCTAACAACATTACAATATTATCCAAATTGCAGAGCTTGGTTCCTGAAGCGGAATGGTTCGACAACttcaaaatatgtataaagtGCCTTGAATCCCTGGACAATATAATCGACTTCAAAAACATGTGTCTTCGCTCATATTTAAAAAGATGCGAAGAGAAACAAAAGAACGCAGAAAACCACATTGAATTTGAAGACGTTGACGAGGATTTCTTTATTAAACAAGAAGAAGAAAGCGAAGAGGAAACTGAGTTTTCAAATGAATCAGATGCATATTCAATTGAAACGGACATATGCAAAGGGTTTTTCATGGACGAGACAACTTCAAACACAAACGCTGAGGTATTTTCAGACACTTTAGTTGAAAGTGAAAACGACAGTGTATTAAACAGTGAACAAGACATTTTAGTTAAAAGTGAACAAGACATTTTAGATGAATGTGAAAAGGACAGTTTAGTTGAAAGTGAACACGACAATTTAGGTGATAGTGAACAcgaaattttagatgaaactGATCACGAAAGTCCATTTGAAAGCAAATACGAAGACGACGACACCAAAATTGAATTAGGTGCCGTCTCAAATTTAACAGTTCTTAAATCAGAAACACCAGATATTGAGATAACCTTTGATGATTCAGAAATATGGTTCACTTGTCCAAGTTGCCGCCACATTTTCTCGAACGATAAACTACTAAACGAACACATAGACTCTAAAGAATGTTTACCAATTGAAGAAAGAACTAAAACAGCAAATACTGAGCCTAAAATTGAATTAGAAATCGaacaatgtttaaatttaatgggcttAAGCAACGAAGGTACAAATGAGGACAATGCAAATGTATTACAAGACAGTTTTAGTGATGATGAACAggaaaattatgattttgatAATACCTTTGTAAAATCAGAAGAAGTCGTGActtatttgaatttaaatgagGCAAAAAATGGTCCACCAAGTAATGAATCTGATTTCAAAAACGACCAGACTAATTATGCAGAATCTGACATTATAAACAGCGCAAGAAATCCCGAGTGTGCGATAAAAGAAACTTCAACTGATAATAAAACAACGTCCGTTGAAACAAATGTCTTTACAGATAACAATGAATCAATGAATGATTTTGAAGATAATAATGACACAATAAATTCTCCTGAAGATAGCAGTGCTAGAATGAATGCTTCTGAATATGATAATGACACAATAAGGGCTTCTAAAGACAACATTAACACAATAAATGCTTCCGAACATAATAATGAAACAATAAATGCCTCTGAAGTTAATTATGAAACAATTAATGCTTCTGAAGGTAATTTTGACACATTAAATGATCCTGAAAATAATTATGAAACAATAATTGCTACTAAAGATAATTATGAAACAACCAATGTTTTTGAAGATAATTATGacactttaaatgattctgaAGATAATATCGACTTAATAAATGCTACTAAAGACAACAGTGACACAATAAATGCCGTTGAAGAAAACATTGACACTATAAATACATCTAAAGatagcaataaaacaaaaaaacctgaGAAAAGAAATAACCCATCTAAAAAAACCCAATTAAACGCAAGTCCacgcaaaaaaacaaaatggaaAATACAACTACCAGGTTCAAGAAACAAATCTGCCAAAAAAAGAATCGTAGCAAAGAAACGAAGCACTAGAGAAATACAAAAGACTGCGTTAAGTATTCAAAAACCacttaaaaatgataaaaaagcgCTACCAGAAATACGCAAAACTAGAACCctatcaaaaaacaacaacgaCATCTCTAAACACGTACTTCCTGCTGAAAACTTACCTCCAATCAAAAACACTAAAGAAAAGGTTTCAAATCCAAGAAAACGCAAATCGGACCCACCCCAAGAAGCCCCCCTTCCGAAAAAACCAAACGGTACAAACCCCGCTATTCCAACCTGCATCAAATGCACACGTCAATTTACACACGAACGTATTCTTAACCCTCATTTCATCACATGCAACGGACACGCCCCTTCAGACAAAAGCGAGGTTATGTCCACTTGCCCTTTATGCAAACGAGTCTTTTTAAATCTAGCTGCAGTCAAAAACCACACTTTTCACTCTCATAAACTAGATTTAGATCAAGTTAACATATGCCAAGTGTGCTTCAAACAATTCTCCAGTGCGCATGAGTTATCTGCGCATGTGCACACACCTCAGGAAGTGGCTAACATAACGCGTAAATGCCTTAAATGTCCACAAACCTTCAAAACCAAAGCACACCTAAGTGAACACTGTTTCAAAGTACATAAGATCGTTTTCAAGGGCGAAGCAACATGTGAAGTGTGCTGCGAAGTGTTTAGTGACCTTCAAGACGTGGTGAAACACCTTGAAGGTGAGCACAAGGTCACGAGACAAGAACTAGTACTACCGTTTGTTTGCCCGGTTTGTTCAAGTCGTTTCAAGGCCGAATTGCTTTCTAACCacattaaggaacattttgaaGGTCGTTCTCAAGGTCAAAAGCGTCCGTTACAACAGCTACAGTGTCAATTCTGTAGTTTAAGGTGCCCAACAGAGGAAACGCTTGTTCAGCACTTTGATAAAGAGCACAagtcgttaaaaaaaaaggttttaaaaccGTTCTTGTGCTTCTATTGTGATTTTAAAAGTATACGGCTTAGGATATTGAACTGTCATACGCAAAAGATGCACGTTAGAAGCCTTGGGCCTTCAGCAAATGAGCCTTATATCTCTTGTGGCACATGTAACGAATCGTTTCCGTCCGAACACCAGATTTACGAACACTGTAAAAAAGAACACTCAATGAAACGGAAAGATATCTACCCGTATGCGTGCCAATTCTGTCCGACCGTGTTCGCGACCTTGAAACGTTGTCAAGGTCACCTTGAAGTGCACAAGCGTAGCAAAACGTTAGCAGCGACGTTTGCACGTTCGAAGGACCAGAAAATGCATGTAAAACCGAAAagacgtttaaacaaaaatcaaagTGTCACCCTTTCAAAAAACATTCTAAGTTGTACGCACTGCGAAAAAACGTTCGAACACCGAAGCGAACTGCTCGAACACCTAGAAAACGTGCTCTCGAACAAAGGAATTGACTGTATTAACTGTTCGAGAACGTTTTACTTCCAAGGCGAAGCTGCCGAACACGGAATTATGTGTTCGACAAAGTGTCCCGAGTGTTCGATTGTTTTTAAGAGCGTGGCACAGATGAACAGACATTTTAAGGTGCACAGTATGAATTTGTGGTCATGTAAATTCTGTgaggtgttttttaataatagaaGCGATTtggtaaaacatttaaaaagtaaacggCATAAgattattgcaaaaaacctTACAGAAAATAAGGTTATGTTAAGGGGTTTTAGTTGTAATGATTGTAGTGAAAGTTTTACTTCTGAAAAAGAGCTTTCAAGTCATGAGTATTCAGtgcataattttgtaaaagttgTGCCGAAGTATTAA
- Protein Sequence
- MSVYINTCCACLSDEYVTEISEFDANNITILSKLQSLVPEAEWFDNFKICIKCLESLDNIIDFKNMCLRSYLKRCEEKQKNAENHIEFEDVDEDFFIKQEEESEEETEFSNESDAYSIETDICKGFFMDETTSNTNAEVFSDTLVESENDSVLNSEQDILVKSEQDILDECEKDSLVESEHDNLGDSEHEILDETDHESPFESKYEDDDTKIELGAVSNLTVLKSETPDIEITFDDSEIWFTCPSCRHIFSNDKLLNEHIDSKECLPIEERTKTANTEPKIELEIEQCLNLMGLSNEGTNEDNANVLQDSFSDDEQENYDFDNTFVKSEEVVTYLNLNEAKNGPPSNESDFKNDQTNYAESDIINSARNPECAIKETSTDNKTTSVETNVFTDNNESMNDFEDNNDTINSPEDSSARMNASEYDNDTIRASKDNINTINASEHNNETINASEVNYETINASEGNFDTLNDPENNYETIIATKDNYETTNVFEDNYDTLNDSEDNIDLINATKDNSDTINAVEENIDTINTSKDSNKTKKPEKRNNPSKKTQLNASPRKKTKWKIQLPGSRNKSAKKRIVAKKRSTREIQKTALSIQKPLKNDKKALPEIRKTRTLSKNNNDISKHVLPAENLPPIKNTKEKVSNPRKRKSDPPQEAPLPKKPNGTNPAIPTCIKCTRQFTHERILNPHFITCNGHAPSDKSEVMSTCPLCKRVFLNLAAVKNHTFHSHKLDLDQVNICQVCFKQFSSAHELSAHVHTPQEVANITRKCLKCPQTFKTKAHLSEHCFKVHKIVFKGEATCEVCCEVFSDLQDVVKHLEGEHKVTRQELVLPFVCPVCSSRFKAELLSNHIKEHFEGRSQGQKRPLQQLQCQFCSLRCPTEETLVQHFDKEHKSLKKKVLKPFLCFYCDFKSIRLRILNCHTQKMHVRSLGPSANEPYISCGTCNESFPSEHQIYEHCKKEHSMKRKDIYPYACQFCPTVFATLKRCQGHLEVHKRSKTLAATFARSKDQKMHVKPKRRLNKNQSVTLSKNILSCTHCEKTFEHRSELLEHLENVLSNKGIDCINCSRTFYFQGEAAEHGIMCSTKCPECSIVFKSVAQMNRHFKVHSMNLWSCKFCEVFFNNRSDLVKHLKSKRHKIIAKNLTENKVMLRGFSCNDCSESFTSEKELSSHEYSVHNFVKVVPKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -