Basic Information

Insect: Cartodere bifasciata
Gene Symbol: ush_1
Assembly: GCA_963920755.1
Location: OY987195.1:8090594-8093543[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00049 0.023 15.3 0.1 1 20 143 162 143 164 0.95

2 9 0.00019 0.0089 16.6 3.3 1 23 210 232 210 232 0.99

3 9 0.1 4.7 8.0 0.7 3 21 255 273 254 274 0.92

4 9 0.18 8.4 7.2 4.5 2 21 542 561 541 562 0.93

5 9 0.022 1 10.1 0.0 3 20 601 618 599 620 0.91

6 9 0.053 2.4 8.9 0.2 2 23 657 678 656 678 0.96

7 9 0.012 0.57 10.9 1.2 1 23 684 706 684 706 0.99

8 9 0.04 1.8 9.3 2.0 1 23 761 784 761 784 0.95

9 9 0.026 1.2 9.9 0.9 2 21 874 893 873 894 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00049	0.023	15.3	0.1	1	20	143	162	143	164	0.95
2	9	0.00019	0.0089	16.6	3.3	1	23	210	232	210	232	0.99
3	9	0.1	4.7	8.0	0.7	3	21	255	273	254	274	0.92
4	9	0.18	8.4	7.2	4.5	2	21	542	561	541	562	0.93
5	9	0.022	1	10.1	0.0	3	20	601	618	599	620	0.91
6	9	0.053	2.4	8.9	0.2	2	23	657	678	656	678	0.96
7	9	0.012	0.57	10.9	1.2	1	23	684	706	684	706	0.99
8	9	0.04	1.8	9.3	2.0	1	23	761	784	761	784	0.95
9	9	0.026	1.2	9.9	0.9	2	21	874	893	873	894	0.93

Sequence Information

Coding Sequence: ATGTTTCCCAGCGAGGGGGAAGAATGGACGACCTCTGCATCTGATGCACCTTCAGTGGACGAACCAACACCATCATCGCCTGCATCCAAATCATCGGAAAAGCATGCTGATGAAGACAGTGAAACGGCCAACAATCACAAACTAGAACCTACTCCGGAGCACACTCCTCGAATACGGCTAAAAGCCAACTTGGCGACAGATCCAGCACATAATGCTCAACTCCATACTCTAGCCACCATCAAACCCGAATCTGACAATAGTCAAAGTAGTCTATCTCCGAGTGAATATCTCGCAAACTTTCCCCAGCAGAATGCTGCCATCCAGTCCGCCATTGCTCGTGGTCTGTTTCTTCCTGCAAATTTAGCAGTGGAACCGCCTACTAGACCCGAATCAGCGGATGTTGCAAGGCCTGTTGTAGTTCCGCCTTTTGTATGTCCTCCATGTGGAATAAGATTCTCTTCGAAAAGTACTTTAGAAGCCCatcaaactttttattgttctcATAGAGCAAATAAGACCGCAGTGGATGAGGATGGAAAATCTGTCAGTGGTGCCGATCCAAGCGGAAGCCAATCTGATCAAGATCCGTCTGAACCAAACTCAAAAAATATCAGAACAGGCAAGCAATACACTTGCACGCATTGTTCCTATAGTGCAGACAAAAAAGTTAGTCTAAATCGCCACATGCGAATGCATACTGTTTCCCCTAGTCCCTCAAATGCAAGCACCTCCAACCAAGAAGGCGATACTTCAGATCGATATTGCGCTGAATGCGACATAAGATTCAGTTCTATGAAAACGTATCGTGCCCACAAGCAGCACTATTGTAATTCGCGGCATGTTGTCAAACCAGGCCAGTCCACTAACAAGACATCCAGTACCTCAGGCTCTTCACCTCCATCGCCTGTTGAGGCCAGCGCTTGTCGCACACCACCGTCCCCTACGACACCAATGTCCACGCAACAACCTTTTGTAGCGCTTCCTACGAATCCGATTATTATTGTGCCATATTCTTTATTCCGAAGCGCAAGTGTGTTACCTGGGATACTTCCCTCTTCAAATGGTTTGCCCACACAAGATGCTTGCTGTTTCCTTCTACCAAATGGGACGCTACAACCAATGACTGCAGCACTTAGTAaagaaattctaaaaaaatcaaaggatGGTATCACTTCCAGAGAATCAGCTACTGGTCCATTGGATCTGACAATGCGACGATCACCTGAACTTGACTATAGTGACCAGGAAAaagaaaatatgaaaaatgacTCACCTTCCCCCGAGAAAATAGAGTGCGTTCCATCTCTTCCTGGATCACCAATGCAAGCATCACCAAGTCAAAGCGTGTCACCAAAGCGTAAACTTAGCGAATCATCGCGGAGCAACAGTCCAAGGTTGTCTCGAACAAaagaaaatgataaaatacatcttagtCCAGAAATTGCTCAAGCGATTTCCTTTGATTTATCTGCTGCAGCTTCCTTGCACCCACTTTTAATGCGAGCTGGTCCATTAGCCCTAATACCGCCAGAAATGCAATTACGACTCGCCGAGCTTCCAACAGCTGCAGCAGTATCAGTCCCGAATATGCAACCCCAAGTCTTGGTAAAACAAGGAGTTTCAAAATGCAAAGAATGCAACATCGTCTTTTGCAAACATGAAAACTACGTGGTTCACAAAAAACACTACTGTTCAGCGCGTTCCCAAGAAGATGACTCTTCCAAAACTTCGGGGTCTCCACCAATAAGCCCAAGAAGTGCAGAGACAACTAGTCCCGCTACCCAATACCAGCAACTTATTTGCATGGCCTGCGGTATCAAATTCGCTTCTTTAGATAATCTCAATGCGCATCAAGCATTTTATTGCTTGAAGAGAGGCGAAGTAGAGGTTCGACGTTGTTCCAAATGTAGAGCAGTGGCGGAACCTGGACATCAATGTGTTCCACCCCCAGCTAGTGTGCCAGGATGGAAATGTCCTTGTTGCGACGTTGTCAGCCCTACTTCCAGCGCTGCCCAGAGACATATGGAGACGCATACTGGTGTTAAAGCGTACAGGTGCTCTATTTGCCGGTACAAGGGCAATACGCTTAGAGGGATGCGGACCCACATTAGGATGCACTTTGATAAGCGCTCCCCAGATTTACAGGAAGAAAAATACATAACCTACATCCTAGAGGACGAAGGTGTAGCCCCAATAGAAGTGCCCGTAATCCCAGGACCAGTAGCCCCAAACGAGGACCGTGTGATATCTCCCAATTCAGAAGGACGTCGGGAGCCACTTCATCATTGCCCAATCTGCACCTTCAGTACCATATTTAAAGGAAACGTACTGCGTCACATTAAACTCGTGCATACGCCGGGTTCTCCTGAAGAAACAACAGTTAACACCAACAGTCAGAACGGTGGTAGCGAAAAATCAGCCAAGTCGGGTACTGGGATGGATGACGACGAAGAAATAGTAATCAAGAAGGAAGCCATGGAGCCTGAGGTCATAATAGCGCCAATTGACGAGCCAATCAAACAAGAACTGCTGGATAATGCAATAGACATTGATACCAAGCCGACGATTTCAGAGCGTGAAGAAGAGATTCTTCAAGAGGCGGCCAAGCCAGGGCCCAAGTACTGCAAGTCGTGCGACATTTCCTTTACTTATTATTCCACTTTTATAGcgcataaaaagttttattgctCAAGTCACGCTGGTGAAATAACGTCATCTTCGACtaacaataacaataatacgACGAGAGCGGCAGAAGCTCCTGTTCTATAA
Protein Sequence: MFPSEGEEWTTSASDAPSVDEPTPSSPASKSSEKHADEDSETANNHKLEPTPEHTPRIRLKANLATDPAHNAQLHTLATIKPESDNSQSSLSPSEYLANFPQQNAAIQSAIARGLFLPANLAVEPPTRPESADVARPVVVPPFVCPPCGIRFSSKSTLEAHQTFYCSHRANKTAVDEDGKSVSGADPSGSQSDQDPSEPNSKNIRTGKQYTCTHCSYSADKKVSLNRHMRMHTVSPSPSNASTSNQEGDTSDRYCAECDIRFSSMKTYRAHKQHYCNSRHVVKPGQSTNKTSSTSGSSPPSPVEASACRTPPSPTTPMSTQQPFVALPTNPIIIVPYSLFRSASVLPGILPSSNGLPTQDACCFLLPNGTLQPMTAALSKEILKKSKDGITSRESATGPLDLTMRRSPELDYSDQEKENMKNDSPSPEKIECVPSLPGSPMQASPSQSVSPKRKLSESSRSNSPRLSRTKENDKIHLSPEIAQAISFDLSAAASLHPLLMRAGPLALIPPEMQLRLAELPTAAAVSVPNMQPQVLVKQGVSKCKECNIVFCKHENYVVHKKHYCSARSQEDDSSKTSGSPPISPRSAETTSPATQYQQLICMACGIKFASLDNLNAHQAFYCLKRGEVEVRRCSKCRAVAEPGHQCVPPPASVPGWKCPCCDVVSPTSSAAQRHMETHTGVKAYRCSICRYKGNTLRGMRTHIRMHFDKRSPDLQEEKYITYILEDEGVAPIEVPVIPGPVAPNEDRVISPNSEGRREPLHHCPICTFSTIFKGNVLRHIKLVHTPGSPEETTVNTNSQNGGSEKSAKSGTGMDDDEEIVIKKEAMEPEVIIAPIDEPIKQELLDNAIDIDTKPTISEREEEILQEAAKPGPKYCKSCDISFTYYSTFIAHKKFYCSSHAGEITSSSTNNNNNTTRAAEAPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -