Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 5e-06 0.00023 21.6 0.7 2 21 104 123 103 124 0.95

2 6 0.0054 0.25 12.0 1.5 1 21 133 153 133 154 0.93

3 6 0.0021 0.096 13.3 2.9 1 21 155 175 155 176 0.95

4 6 2e-05 0.00093 19.7 7.0 1 23 184 207 184 207 0.97

5 6 0.0011 0.049 14.3 3.2 1 20 261 280 261 281 0.94

6 6 0.00011 0.0051 17.4 2.6 1 23 290 313 290 313 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	5e-06	0.00023	21.6	0.7	2	21	104	123	103	124	0.95
2	6	0.0054	0.25	12.0	1.5	1	21	133	153	133	154	0.93
3	6	0.0021	0.096	13.3	2.9	1	21	155	175	155	176	0.95
4	6	2e-05	0.00093	19.7	7.0	1	23	184	207	184	207	0.97
5	6	0.0011	0.049	14.3	3.2	1	20	261	280	261	281	0.94
6	6	0.00011	0.0051	17.4	2.6	1	23	290	313	290	313	0.96

Coding Sequence: ATGGAAGCGGCAATTGCTGCCGTACTTCAAGGCGCAGGCCTTAGGGAATCATCGCGTTTATATAATGTTCCCGTTTCCTCATTGCATGACAAATTATACAAAAGAAACTATAGAAAAGAGTTGGAAACAGGTCCTTTATTTACTGAAGAACAAGAAAAACAAATCGTAGATCGATTGTTTTGGTTGAAAAATGTTTCATGTGGTTTAACATCGCAGCAAATGTGTCGTTTTGTTTTTTCGTATGCCGAGGATTTGGGACTTAATCATCCATTTAATAAGCACACAAAAACGACTGCTCCGAAACCAATAACATGTGAGTTTTGTGGTCGCTCATACCGGTATCGATACAATCTAAATAGACATTTGCGATATGAGTGTGGGCTTCAAGAAGGAAATTTTGAATGTCAGTTTTGTGGTAGAAAACTTAAACACAAACAAGCATTAATGGTTCattCCAAAAAATTTCAATGTCAACGATGTGGAAGACAATATCGACACAGAAGTGGATTATACAGTCATAAGAAACACGAATGCGGAAAAGCAGCAAGATTTGTCTGTCCGTTTTGTGATAAAAGATGTCAccaaaaatctaattttaagAACCACATGAGAATAAAGCATAGTGTTTTTGATGTTACTGAGTACCTACCTGTTCAGAATGAAGAAGATTTTAATGATGCTGAATCCTATTTGAGAAACATTCTTACTAATGAAAAAGGAATCATGACAGAAACAGTAACCATAATAAGCGTAGAAGCAGATAACGATGTTGTAAGACCCTTTAAATGTCCGAAATGTGGAAAACGTTACAAACACAAACACATTATGCGTCGTCATTTGGAATTTGAGTGTGGAATTCCCCCACAATTCAGTTGTTCTATCTGTGGACATAAGAGTAAACGAAAGTATGAGTTGACTCTTCATATTAAAGCGAAACATATGAATATgttgtaa
Protein Sequence: MEAAIAAVLQGAGLRESSRLYNVPVSSLHDKLYKRNYRKELETGPLFTEEQEKQIVDRLFWLKNVSCGLTSQQMCRFVFSYAEDLGLNHPFNKHTKTTAPKPITCEFCGRSYRYRYNLNRHLRYECGLQEGNFECQFCGRKLKHKQALMVHSKKFQCQRCGRQYRHRSGLYSHKKHECGKAARFVCPFCDKRCHQKSNFKNHMRIKHSVFDVTEYLPVQNEEDFNDAESYLRNILTNEKGIMTETVTIISVEADNDVVRPFKCPKCGKRYKHKHIMRRHLEFECGIPPQFSCSICGHKSKRKYELTLHIKAKHMNML

Sequence clustering based on sequence similarity using MMseqs2