Cbif007872.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987196.1:3280103-3284473[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.047 2.2 9.1 0.7 1 20 125 144 125 147 0.89 2 15 0.07 3.2 8.5 3.1 1 23 165 187 165 187 0.97 3 15 3.2 1.5e+02 3.3 7.4 1 23 191 213 191 213 0.98 4 15 0.035 1.6 9.5 3.4 2 23 218 239 218 239 0.96 5 15 0.0081 0.38 11.5 0.5 1 23 245 267 245 267 0.94 6 15 0.035 1.6 9.5 0.2 1 23 273 296 273 296 0.92 7 15 0.00024 0.011 16.3 1.3 1 23 305 327 305 327 0.98 8 15 0.15 7.1 7.5 0.5 1 21 333 353 333 354 0.94 9 15 0.00053 0.024 15.2 4.2 1 23 386 408 386 408 0.98 10 15 1.1 52 4.7 0.7 2 23 414 436 413 436 0.94 11 15 0.001 0.047 14.3 0.2 1 23 645 667 645 667 0.97 12 15 4.2e-05 0.0019 18.7 2.3 1 23 680 702 680 702 0.97 13 15 0.048 2.2 9.1 0.6 3 23 741 761 740 761 0.97 14 15 0.0016 0.073 13.7 3.3 3 23 769 789 767 789 0.96 15 15 0.17 7.9 7.3 0.3 2 23 795 817 794 817 0.94
Sequence Information
- Coding Sequence
- atgtctgAGAAAGACGCCTTTACCAGTGAAATAATGAAAGTTGAAGAATGCAATTTGAAGCCAATTAAAATGGAATGTAAAGACGAATTATCACATAAAATCAAAGCGGAGAAAATAGAAAACTCTGCGCTAGAAGAAAAACATTCcatcattaaaattaaaaccgaACCTGAAGATTATAAATCTGAATTTTTTGttCCTGAATTTATCGGCTTCAAGAAATCCTATTTCTTTAACGAGGAATTCAAAATGGAAACCGAGGAGTACGACCTAATGCAAATAAAGAAAGAAATTAAAGAAGAAAATCAATCAACAAGTGAAGATATTAAATTTGATATCAAAGGCCATTTTCTACTTGAAAACCAAAACAAATTTCATTGTCCCAAATGCCCTATGAGCTTTGCTACTAATGCCAAACGTTTGGACCATATTTGGCGGCACAAACAAAACCGACAAGAACTATATAAAAAACAGTACCGCTACCAACAAAAGTTTAAATGCTCAATTTGTCGTAAGAGGATTTCAACGGCCATAAATTACCACTTacacaaagaaaaacataacaaaatcCATAAATGCAAGTACTGTAAGTACCAAAGCAAAAGCCTAGTGTTTTTTGAACACCATGTTACAACTCATTCACAAAAACGGTACTGCCAGCATTGCTCGTTTACTACAAAACGACCTGGGGTTTTTAAACGGCATATGCTGAATCATTTGACGGAAATGCCGCATTCTTGTGAGTACTGCCCGGCTAGATTTAAGCTGGAGGGTTCTTTAAAGGAGCATTTGGTACTACACACTGAAGGGAAGCCGTTTGATTGTCAGTACTGCCCATTTTCTGCTGAAAAAGAGGGTTCTTTACAAAAACACATGGTTTTAAATCATACACAAGAGAGTCTATGCAAAGAGTACCATTGTCCGTACTGTGACTTAAAGTTTGAGGTTGCGAATTCTTTCAAAAGACATCTACTAATACATATTGGCGAAAAGCCTTACGCTTGCCAGTACTGCTCATTTACATCCATGAATGATAGTACTCTTAAAAACCACATTACAACAAAACAGTTAGAAATTAAGCCGTACTTTTGTGAGTGGGGCCAATTCCCATATATTCGTAACGAACATCTTTCAAAACAAGTTGAAATAAAACCATATTCATGTCCGTACTGCTCTTTTAAATGCACAAAAGCCAGTCTTCTAAAGAAGCATCTTAAACTACATACTGAGGTAGTACTTTCTTGCgaattttgtcttttaaaatGCATCGGTCCCAACTCTCTAAAGCAACATTTGTTGTCCATACATCGAGATGAAGTACCACTAGCTTTAAGACTATCAAATCAAGATGCTGCAGCGTGGTCTTTTCAAAATCGTACCAGGATAAAAGTAGAGAATAAAAATGGATCTGGGGATACGCTTTTTGAAGTTACTAAGGTCGAAAGTAAAGGTTTAGACTCTTGTTCGATGATTAGTGTAAAAGAAGAGGCATTAGGCAATGTTTCGGATATTTTAGATCATGATATCAGCATCGAACCAGATTATAAAGAAGAATTAGATGTTAAACAAGAAAACATAGAAATAAAAGTAGAGGAATGCaacgaaataaaaatagaatctGCGGAAGAAttcttttttgttaaagtCAAAGAGGAAAATGAAGAAAATGCACCAGAAAATACCCCTTTAGATGTTGATAAAAGCTTAGAATTAGCTTGCGAAGATGTTAAGCAGAAAATTATTGCGCCTGAACGTACTTATGGCGAGGAAAACTTAACCATAATGAATCtgataaaaatagaaatcagGCCTAACAATTCCAAACAGATAAATACGGAAACATTAAAAGACAACACATTTACAAGTAAAGAACGTACTGAAGTAACTGAAAATTCCCTTGAAAACGATTTACTCATCGAAAGAACAAAAAGATTTGTGTGCGGCAAGTGCAATTTAAGTTTTGCCACAAAAATCGATTTGGTAGATCACAATatgaagcataaaaaaaagggTAAACGGAACAAAATCGAATACAATTATTCATGCTCCATTTGTGACAAGAAGTACTCAGAAAAGCGTTATCTAACCAAACATCAAGAGAATCATTATCTTGATATTCTTCTGACGTGCCAGTACTGTGCATATCACAGTACGAAAGTAATAATTTTCAAACGACATTTGCGAAAACATTCCCGCGAGCCGTCCAACCAAAGAAAAGACTGCCAGTACTGCCAATTTACAACAAAACGACCAGGAGTTTTTAAGTTACATATGTTAGAACATTCAGAAGAACTGCCTTATggttgccagtactgtccatttAGATTTAAGCATAAGTTTTCTCTTAGACAGCATTTGTTATTACACATTGATGAAAAATGCGtatgccagtactgtccatttGTGGCTAAAGCTGCGGGTCTTCTTAAGACACATATTAAGGCTAAACATCCTCATGGAAAAAGGACATTTAATTGCGATATAAATGAGGACGATAATGTATTACCTTCAAGGACTTGCTTAGgaattaaaaaaggaaatgcAGAACCTAGTTTAAGAGATACAGAAGCAGTATTTATTGAGACAGAAAGTACAAATTTGGACTCACATTTAATAAAGTGTATAAAGGAAGAAAATATAAGCGACACTTTGGATTTAAACAATCACTTTAGCATCGAGTTATCCCCCAAAGAAAACTTAGATGTTAAACAAGAAATTACTGGTAAGTggcattcttaa
- Protein Sequence
- MSEKDAFTSEIMKVEECNLKPIKMECKDELSHKIKAEKIENSALEEKHSIIKIKTEPEDYKSEFFVPEFIGFKKSYFFNEEFKMETEEYDLMQIKKEIKEENQSTSEDIKFDIKGHFLLENQNKFHCPKCPMSFATNAKRLDHIWRHKQNRQELYKKQYRYQQKFKCSICRKRISTAINYHLHKEKHNKIHKCKYCKYQSKSLVFFEHHVTTHSQKRYCQHCSFTTKRPGVFKRHMLNHLTEMPHSCEYCPARFKLEGSLKEHLVLHTEGKPFDCQYCPFSAEKEGSLQKHMVLNHTQESLCKEYHCPYCDLKFEVANSFKRHLLIHIGEKPYACQYCSFTSMNDSTLKNHITTKQLEIKPYFCEWGQFPYIRNEHLSKQVEIKPYSCPYCSFKCTKASLLKKHLKLHTEVVLSCEFCLLKCIGPNSLKQHLLSIHRDEVPLALRLSNQDAAAWSFQNRTRIKVENKNGSGDTLFEVTKVESKGLDSCSMISVKEEALGNVSDILDHDISIEPDYKEELDVKQENIEIKVEECNEIKIESAEEFFFVKVKEENEENAPENTPLDVDKSLELACEDVKQKIIAPERTYGEENLTIMNLIKIEIRPNNSKQINTETLKDNTFTSKERTEVTENSLENDLLIERTKRFVCGKCNLSFATKIDLVDHNMKHKKKGKRNKIEYNYSCSICDKKYSEKRYLTKHQENHYLDILLTCQYCAYHSTKVIIFKRHLRKHSREPSNQRKDCQYCQFTTKRPGVFKLHMLEHSEELPYGCQYCPFRFKHKFSLRQHLLLHIDEKCVCQYCPFVAKAAGLLKTHIKAKHPHGKRTFNCDINEDDNVLPSRTCLGIKKGNAEPSLRDTEAVFIETESTNLDSHLIKCIKEENISDTLDLNNHFSIELSPKENLDVKQEITGKWHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -