Cbif012101.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987198.1:3215114-3216493[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.79 37 5.2 0.6 2 23 3 24 2 24 0.95 2 12 0.00047 0.022 15.4 0.4 2 23 143 165 142 165 0.97 3 12 0.00034 0.016 15.8 2.9 1 23 172 195 172 195 0.97 4 12 0.00014 0.0062 17.1 2.4 2 23 202 224 201 224 0.95 5 12 0.059 2.7 8.8 3.2 1 23 231 253 231 253 0.98 6 12 0.0014 0.067 13.8 3.4 1 23 258 281 258 281 0.96 7 12 0.026 1.2 9.9 0.7 1 23 288 311 288 311 0.95 8 12 0.015 0.68 10.7 5.7 1 23 316 339 316 339 0.96 9 12 0.0019 0.09 13.4 0.9 1 23 346 369 346 369 0.94 10 12 0.0045 0.21 12.3 3.3 1 23 374 397 374 397 0.95 11 12 0.00024 0.011 16.3 3.4 1 23 404 426 404 426 0.98 12 12 0.22 10 7.0 0.4 1 20 432 451 432 453 0.92
Sequence Information
- Coding Sequence
- ATGTTGGAATGTGACCAGTGTGACTTCAAAAGTGTTTCTAGCAAACGTATGGAGGAGCATACCTCTTCCCACAACCTACAAATAAAGCAAGAAAAAACAGATATTTTACATTATACTACACTCGATTCTGTTACCACAAGCTACAATACGAGTGGTGACTCCAACAATGACCATGAAATGATCAACAACTATGAAACAAAAGTTAAGATCGAGAAAATAGACGAGGACATCGAGGAGCAACAATTTCAAAATGAACAAGAGGATGCTGTATTTATGACTGAAGAAATTTATGTTAAGGAAGAATCCACAGGAATGAATGGTGTTAACATTAAAACGGAAGGATCATCAGAATCAGACAGAGACGAGGAACCATTAGATGAAAAGTGGCAGACCGATGACAATGGCTACGccgttaaaaaatcaaataaatgcCCAAAGTGTGACTACACTCCCAGGTTTGCGTACAATCTAAAGCGCCACATAGAGACCGTGCACAAAAAGGGTAATGTTACGTATTCCTGTGAACACTGCAACTACACCACAGCCTCTAAGAAGATGTTAACAAGTCACATATCTATGAAACATCCCGAACAAGTTGTCGATTATTGCAAACACTGTGACTACAAAACAAGCAACGCAagccttttaaaaaatcacataGAGAGAAAACACAACGACGGTAGCATCACATATTCCTGTGACCACTGTGACTATACCGACATCTCAAAATATCGACTTCAAAGTCACCAATTAAAGCACAGAGAACCGTTATATTCTTGTGAAAAATGTGACTATAAAGCGAAAACATTAACGCATCTAAATAGACACTTGGACAGAAAGCACAACAATGGAAGTGTCACATATTCCTGTAAACGGTGTGACTACACCTCAATCTCAAAGATAAATCTAGGGCTACACGTTACAAGACAACACGGAAAGAAGTTTCATCAATGCCATGTATGTGATTACAAAACGTGCAATACGGGACTTTTAAAAGTGCACATAGACAGAAAGCACAGTGACTCCAATGTCACATATTCTTGTGATCAATGTGACTACACGTCCAATTCTAAAACAAACCTGGCCCTACACGAAACTAGACAACACCGGCAAAACTTCCACTATTGTGAGAAATGTGACTTTAAAACCAACCAAGCGGGGCATTTAACAGTTCACATTGATAGAAAACACAATGATGATAATGTGACTTATTCTTGTGATCAGTGTGACTACACCACCCACGCTAATTACAACTTGAAAACACATATGCGCTCACATAGCGGTATTAGCATGTATGTCTGCGATAAGTGTGATTTTAAAAGTAGTAGAAAAGGAGTTAACAAGTCACATATCTATGAAACATCCCGAACCAGTTATTGA
- Protein Sequence
- MLECDQCDFKSVSSKRMEEHTSSHNLQIKQEKTDILHYTTLDSVTTSYNTSGDSNNDHEMINNYETKVKIEKIDEDIEEQQFQNEQEDAVFMTEEIYVKEESTGMNGVNIKTEGSSESDRDEEPLDEKWQTDDNGYAVKKSNKCPKCDYTPRFAYNLKRHIETVHKKGNVTYSCEHCNYTTASKKMLTSHISMKHPEQVVDYCKHCDYKTSNASLLKNHIERKHNDGSITYSCDHCDYTDISKYRLQSHQLKHREPLYSCEKCDYKAKTLTHLNRHLDRKHNNGSVTYSCKRCDYTSISKINLGLHVTRQHGKKFHQCHVCDYKTCNTGLLKVHIDRKHSDSNVTYSCDQCDYTSNSKTNLALHETRQHRQNFHYCEKCDFKTNQAGHLTVHIDRKHNDDNVTYSCDQCDYTTHANYNLKTHMRSHSGISMYVCDKCDFKSSRKGVNKSHIYETSRTSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00278500;
- 90% Identity
- iTF_00278500;
- 80% Identity
- -