Cbif015094.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987199.1:10199188-10206520[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.16 7.2 7.4 1.3 5 21 167 183 164 184 0.90 2 17 0.087 4 8.2 0.2 3 21 242 260 241 261 0.92 3 17 0.36 17 6.3 3.8 2 23 274 296 273 297 0.93 4 17 2.3 1.1e+02 3.7 0.1 3 21 306 324 305 325 0.92 5 17 9 4.2e+02 1.9 2.4 3 19 336 352 334 357 0.83 6 17 0.027 1.3 9.8 0.2 2 23 366 388 366 388 0.96 7 17 2.7 1.3e+02 3.5 1.0 1 21 399 418 399 419 0.92 8 17 0.024 1.1 10.0 2.1 1 19 441 459 441 464 0.89 9 17 0.18 8.4 7.2 0.3 2 19 514 531 513 536 0.87 10 17 0.015 0.7 10.6 0.6 1 21 548 568 548 569 0.94 11 17 0.0071 0.33 11.7 0.1 1 21 579 599 579 602 0.89 12 17 0.00023 0.011 16.4 0.7 1 23 607 630 607 630 0.96 13 17 0.01 0.47 11.2 2.6 1 20 640 659 640 661 0.95 14 17 1e-06 4.6e-05 23.8 0.2 1 23 668 691 668 691 0.96 15 17 0.00059 0.027 15.1 5.1 1 23 699 722 699 722 0.97 16 17 0.00028 0.013 16.1 3.1 1 23 739 761 739 761 0.95 17 17 0.00019 0.0086 16.6 1.3 1 23 767 789 767 790 0.95
Sequence Information
- Coding Sequence
- ATGGCCTCATATGAAAACACAAACTATTGCTGTATCTGCCTAACGCACAACTGGATAACACAACTAAGTTACAACGACGCTAATAACTTCCCAATCATCtcaaaattacaaaacatCGTTCCAGAGGTGGAATGGAACGCCGAATCGAAGATTTGTTTACAATGCCTGGATTTAGTGAATAATttcaatgaatttaaaaaactgtgcCTGGAAACGAATTTTAACAAACGTATTAAACTAGAGGAAGGTCCAGCGCTAGTTGAAACCATTCTTGATGTAAAAGAAGCAGAAGCTAGTGCTAAAAAAGGGGAAACGACTGAAAAAAGCAGCATTTCTAGTGAGTTATGTGGTAAAAACGAAGTTCCAAGTACACAAGTGGATAAAAGTGATAACAATTCGGATGTAGACGCTTTAGCAAGTGACAATTTAACAAATAGTGATAGTGAATCAAGTGAAGAAGTAGTTAAACCGAAACGCCGGCGTAAAAAGCACAAATGCGACTGTGGCAgtgcgttttttaaaaaaagtgatcTAAAAAAGCATACTGAAACATGTAGTGAAGTTGTGAACGAAAAAAGCGCAACAGAAAAGTTTTCTTGCGGTTTTAACTGCCAGTTAACTTTCACAGACATCAACAAATGTAAAGAACATCAAAAAATCTGCCTAGGACTGTTCAACCCGAAACCAAAAAACCGCCCATACGCCGACAGTTTAGATAACATTTGCGATAAATGCACGCGTAAATTCACAAGCGAACAAGTCCTTTCTGCGCACGTTAAAGAGTGTAACGCTATCACGGACTTAAGTGAGGTTAGGAGTACCTGCGTTTTGTGTAATAGTGAATTTTGTAACCAAAATGCTTTAAAGGCACATTTTATCAAGAAGCATCATGTGAATATTGATGATATTAATATATGTTTGGTGTGCAATGCGCAATTTGATAGTGCGCTTGACTTTACTGCGCATGTGCATACGTCTGAGGAAGTGGCTGGTGAAACGCACTTGTGTGATCAGTGCTCGAAGGAATTTGAAAATGTTCTGGAATTAGgaaAACATTGCTTCACTGCGCATGACACGGTGTGGGTGAGCGATGCGAGCTGCGAAGTTTGtttggaaatatttaaaacagaagAAGATGCTATACGACATTATAAAACTACTCATAACATAAAAGGACAGCTTTTAATAAGGCCTTACTTGTGTTGGCACTGCCCGGGTCGGTTCAATTTAACATCGTTCAAAACCCATGTCCGATATAACCTCAAATCTAAAGCTACTTCCAAAGAAACAGTGGCTAAAAACACGTCAGTTGATGTAAAGTTCAAGTGTGATCTTTGCGGGCAATTGTTCATAAGTAGAAACCAGTTAAATTTACATTGTTTAAAGGATCATAACCCGGAACACAAACAATCAGTTTTGGCCTATTTTTGTCGACACTGCGCAATCAAAAGTAAATCTATACAAGCTCTATGTGTACACACCAAAAGAAGACATTTAAAATCAGGAAACGCACCAGAAGATGCAGACAAGCCCCGTATAACATGCGAAATTTGTAACGCCCCCTTTACAACCCCCTTAAACGTAATAGACCACTGCAAATTACAACATAACCTAGAAAACGTAAATTCTACCATAACCCCGTACGCATGCCCGCACTGTCCATTCCGATGCGTCACCCTAGCCACATTCAAGGAACATATCGCTACGTATTTCAAGAAGGAAATAAAGCAGCGATATGTGTGCCCCACATGTGGGGCTGATTTTTCCactaaacaaatattaaatcgACATGAAGATGCGGTTCATAAAAAGATAACTCATATGTGTGAGGCGTGTGGCAAGATTTTTCCGAAACGGGCTTATTTGTCGGTTCATATTCGAAAATATCATCCAGATTTATTGCCACTGGACAAGCAGTTCAGATGCACACATTGTGACAGATGGTTCACAAGTAACTGCGAACTCCAAATGCACATCGACAGAGTTAACGGAGTTAAAAACTACGCGTGCGACGTCTGCCCCCGTAGATTCACCCGCCCAACAGAACTAAACAAGCACATGGAACGTGTCCACTCCGAGGACCAAACCCGCAAGCACGAATGCTCAGAATGCCATCAGTTCTTCAAGGACAAAGGATACATGAAGTTACACATGAAGAAGGCCCATAATCTGGGCAGTCTTAAGTGGATACCGCGCAGTCAAAGGCCGAGAGAGCATGCCTGCCACTTGTGCTCTAAGGACTTTGTGCAGAAGAGGGATCTAGAGCGACATCTGGACTCACACGCCGGTATTAAGCGGTATGCGTGTCAGTTTTGTAACGCACCGTATGCGAAGAGGGAAAACCTTAAGGCGCATTTAAGGAAACATCATAATTTTACGTTGTAA
- Protein Sequence
- MASYENTNYCCICLTHNWITQLSYNDANNFPIISKLQNIVPEVEWNAESKICLQCLDLVNNFNEFKKLCLETNFNKRIKLEEGPALVETILDVKEAEASAKKGETTEKSSISSELCGKNEVPSTQVDKSDNNSDVDALASDNLTNSDSESSEEVVKPKRRRKKHKCDCGSAFFKKSDLKKHTETCSEVVNEKSATEKFSCGFNCQLTFTDINKCKEHQKICLGLFNPKPKNRPYADSLDNICDKCTRKFTSEQVLSAHVKECNAITDLSEVRSTCVLCNSEFCNQNALKAHFIKKHHVNIDDINICLVCNAQFDSALDFTAHVHTSEEVAGETHLCDQCSKEFENVLELGKHCFTAHDTVWVSDASCEVCLEIFKTEEDAIRHYKTTHNIKGQLLIRPYLCWHCPGRFNLTSFKTHVRYNLKSKATSKETVAKNTSVDVKFKCDLCGQLFISRNQLNLHCLKDHNPEHKQSVLAYFCRHCAIKSKSIQALCVHTKRRHLKSGNAPEDADKPRITCEICNAPFTTPLNVIDHCKLQHNLENVNSTITPYACPHCPFRCVTLATFKEHIATYFKKEIKQRYVCPTCGADFSTKQILNRHEDAVHKKITHMCEACGKIFPKRAYLSVHIRKYHPDLLPLDKQFRCTHCDRWFTSNCELQMHIDRVNGVKNYACDVCPRRFTRPTELNKHMERVHSEDQTRKHECSECHQFFKDKGYMKLHMKKAHNLGSLKWIPRSQRPREHACHLCSKDFVQKRDLERHLDSHAGIKRYACQFCNAPYAKRENLKAHLRKHHNFTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -