Cbif017124.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987201.1:3952153-3957404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.7e-06 0.00036 21.0 0.5 1 23 40 62 40 62 0.98 2 18 0.1 4.7 8.0 5.8 1 23 68 90 68 90 0.97 3 18 1.6e-06 7.3e-05 23.2 3.2 1 23 96 118 96 118 0.99 4 18 0.00073 0.034 14.8 0.3 1 23 124 146 124 146 0.99 5 18 0.015 0.7 10.6 3.9 1 23 167 190 167 190 0.96 6 18 0.75 35 5.3 0.2 2 23 206 228 205 228 0.94 7 18 0.0011 0.052 14.2 0.5 1 23 257 280 257 280 0.96 8 18 0.19 9 7.1 0.0 3 23 384 404 383 404 0.95 9 18 0.00045 0.021 15.4 0.8 3 23 414 435 412 435 0.89 10 18 0.0053 0.25 12.1 0.8 1 23 440 463 440 463 0.98 11 18 0.0097 0.45 11.2 4.9 1 23 529 552 529 552 0.96 12 18 0.0002 0.009 16.6 2.8 2 23 638 659 637 659 0.97 13 18 0.0035 0.16 12.6 0.6 1 23 668 690 668 690 0.97 14 18 6.3 2.9e+02 2.4 0.4 3 23 699 719 698 719 0.95 15 18 7.5 3.5e+02 2.1 0.4 3 12 768 777 766 779 0.85 16 18 0.006 0.28 11.9 0.1 2 23 835 856 834 856 0.95 17 18 0.0055 0.25 12.0 0.1 1 23 864 886 864 886 0.97 18 18 0.1 4.7 8.0 3.1 1 23 893 915 893 915 0.96
Sequence Information
- Coding Sequence
- atgaaaatgctttttaaggGAAATAGCAACCGCCTAGAATTATTAATCGAGAAAATCCACTCGACGAAAGATAGCGAAGCCAAGCAAAAaactgaaaataattCTCTAGCCGAACCGTATGCGTGTTCAATCTGTCAGCAAAAGTTCGCCAGATCTTCTTCCTTGGACGAACACATGCAGACCCATACTGATCAACTTCAATTCACGTGTTCATACTGTCCGAGATTGTTCAAGCATAAAAGATCAAGGGATCGTCACACAAAGCTTCATACTGGcgataaaaaatacaaatgccAACAGTGTGATTCTGCTTTTTCTCGAAGtgatcatttaaaaattcatatgAAGACGCATGATAGTCGAAAGCCGTACAAATGTGGAAGCTGTAACCGCGGTTACAATACGGCTGCGGCGCTAAGTTCCCATCAACAAAGTCATTTAAAACAAGAATCGCGTTCTGGCCAAAACAGCGATGGCAGCAGCCCTAGTCCTGGGCTGTTCCATTGCTTCCACTGCACCGAGTCCTTCTCCAAAATAGAATTTTTACAGAATCATTTAATGGTAATTCACAATGAAAAGCTAGTAGAAAAAACCGAGCCCGAAGACATAAAAATAGTCTGCATGTATTGTTCCAAAGAATTTCTGTCGTTAGACCAAATGTACCAGCATGTAAACGTGACGCATAAAGACGTACAAAATGGGGTTGCATCTGCAAGTCCCCCAcgtgaaatttaccaaaacgGCCACCCTGCAAGTCCGAAACCAAAACACGCTTGTGATAGATGTACGATGGGTTTCGATAACCCGGAGCTGCTTAAAGAACACATAAAAACGTCTCATTGGGGACCTACGGTTAATAGCAGCTCGGACACCTATACCGCGGCGTTGCTCGAGAAGAGTTACTCTCCGTTTGCGCAGACGCAACCGACTGATTTAAGTAGGAAAAAACCAAGCGCGCGTGATGCTACATGTGATAAGTCTGCAAAGCGGAAAAAGGAGCAGGATTCGCCATTTTCGGTGAGTCCTTACGACGCCAATGATAAGCCGTGTATTTGTTCATGCTGCTACGCTCAATTACCCAACTTTAAAAGCTTCCTCTTGCACATGGAAACGCATATGGCGTCGTCCAATAGTTCACTTCTAGGATTCTGCCCCGTGTGTGGTGAACCCGGAAGGGAGCCGGTCTCGTTCACCAACCACATTTTTGGACACGCGATTGCCCAAGTCCCAGGAAGTTGCTGCTATGTTTGCAATAAAACCTTCGAGAACGCTGAAGCTTTGCAGAAACACCTAGCAGACATGCATGTTGtttctgtttttaaatgcactatTTGCAACGAAATGCTGGACTCAAAGATGTCTATGCAGATGCATATCTCGACCAAACACAGCGATGAGTGCAACCACTTTAAATGCTATCTCTGCAACAACCAAGTGTTTCACGACCGACTTTCGGCTGAGCTTCACATTTCAATGAAACATTACTATCAATTCGCTGCAACAACTAGCCTTACCAACCAATCGCTCCTTCGGACACACTATCAACTCGAATTGGACTCTCGCTTACGGGAACTGGGTCTCATATTCCATTGCACCTTTtgccaaaaaacctttaaagaCAAATACTCACAGTATATTCACATCTTGAAGGAGCACAACGATTCGCGAGAGGGCGAGAAGTACTTGTTGGAAACAGCGTTCAACACTCCAAGGCAGACGCCGTCTATTTCCCCTACGTATTTGTTCCCTCCGAGAACTATGGAATCGCCAGAAACCAAACTGGACGTCACCAAAACGCCGGAACCAGTTACATGCAACATCTGCAACCGCAACGACTTGGCATCTGAAAGTGACTTGCTTCTCCATAAGAAGATACAACACTCCAAAACCAAGTCGGGTTCCGTCAGCCTGCAATGCGCTTACTGCAATGAGTTCTGCAAATCGCGCAACGACTTAGAGAACCACATGAAGACACACCAAGTTTCGGGCGGAAAGGCGAAGCACAAGTGCAACATATGCGACGAGATCTTTTCGTCCGGATTGACGTTAGCTGATCACAAGTTGACGCACTGCAAGATAGTCGACGGCAACAATTGCGTGCAGTGCAAAGCCACACTCGTTGACGAACAGTCGTTTTACTCGCACCAGCTGCAACACAGCAACGGTTTGGCTAAACCAAACTCACAGCAGATTTCGCTACCAGCCAACTGTATAATCTGTTGCCAAACACTTCAAACTGATTTGGAGATCAAACTACACTCCAACTTCCACTTGAAGCGCCTGTTGCACAAGGAACACTTATGCGGGGGGTGTAGCAAGGTCTTCGACACTACAACTGGGGAGACCCTCAAGGATAGAAGTCCGTCGGACCAGATCACGGTTTCGCTTTGTAAGGATTGCAAGGGGAAGAGCAGCCCTGACGAAAGTGAGTCCAACAAGTTTCAAACCTTCAACAACGAGAACCACGGAATCGTCCACATGCTAAACGAGGGTGCTAATGTAGAGTGTAGACTGTGCAAGCAAGCTTTTGCCTCGCCCGTGAAACTTCAAACGCATTTGATTGAGCATAACTTCTACGGGATGAATCAGTACTCATGCTATGTTTGTTCTTCGGTGTTTACTGCGGCGTCTGGTTTGCAGAGCCATATGATTGGACATGGGTTGGACCATCGGCCGTATGACTGCAGTCATTGCCAGATGAAGTTCTTCTTCAGAGCTGAGTTGGATAATCACAGGTACGTCCACTTCGTTAATTCGCCGAATGGAAGAACGCCAACGCCTAATTACAACGGTACGGTTGAAATGAGCTCCGCTGAGCAGTACCAAACGTGTAGTTTTTGTTCGAATACCTTTTTGAACAACGCGCTTTTCGCGGAGCATATCGCGCAATGTTCGTATTTGTCGCGCGGTAAAGACAGCTTTTCTCTAAATGTAAGTGACAATAATATTGTAAAGCAGGAAGTCGAAAGTGATGACGGTAAAAAGGACGAGCAATAG
- Protein Sequence
- MKMLFKGNSNRLELLIEKIHSTKDSEAKQKTENNSLAEPYACSICQQKFARSSSLDEHMQTHTDQLQFTCSYCPRLFKHKRSRDRHTKLHTGDKKYKCQQCDSAFSRSDHLKIHMKTHDSRKPYKCGSCNRGYNTAAALSSHQQSHLKQESRSGQNSDGSSPSPGLFHCFHCTESFSKIEFLQNHLMVIHNEKLVEKTEPEDIKIVCMYCSKEFLSLDQMYQHVNVTHKDVQNGVASASPPREIYQNGHPASPKPKHACDRCTMGFDNPELLKEHIKTSHWGPTVNSSSDTYTAALLEKSYSPFAQTQPTDLSRKKPSARDATCDKSAKRKKEQDSPFSVSPYDANDKPCICSCCYAQLPNFKSFLLHMETHMASSNSSLLGFCPVCGEPGREPVSFTNHIFGHAIAQVPGSCCYVCNKTFENAEALQKHLADMHVVSVFKCTICNEMLDSKMSMQMHISTKHSDECNHFKCYLCNNQVFHDRLSAELHISMKHYYQFAATTSLTNQSLLRTHYQLELDSRLRELGLIFHCTFCQKTFKDKYSQYIHILKEHNDSREGEKYLLETAFNTPRQTPSISPTYLFPPRTMESPETKLDVTKTPEPVTCNICNRNDLASESDLLLHKKIQHSKTKSGSVSLQCAYCNEFCKSRNDLENHMKTHQVSGGKAKHKCNICDEIFSSGLTLADHKLTHCKIVDGNNCVQCKATLVDEQSFYSHQLQHSNGLAKPNSQQISLPANCIICCQTLQTDLEIKLHSNFHLKRLLHKEHLCGGCSKVFDTTTGETLKDRSPSDQITVSLCKDCKGKSSPDESESNKFQTFNNENHGIVHMLNEGANVECRLCKQAFASPVKLQTHLIEHNFYGMNQYSCYVCSSVFTAASGLQSHMIGHGLDHRPYDCSHCQMKFFFRAELDNHRYVHFVNSPNGRTPTPNYNGTVEMSSAEQYQTCSFCSNTFLNNALFAEHIAQCSYLSRGKDSFSLNVSDNNIVKQEVESDDGKKDEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -