Cbif015089.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987199.1:10161224-10165748[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00035 0.016 15.8 1.4 1 22 166 187 166 187 0.97 2 16 0.7 33 5.4 0.1 1 20 251 270 251 272 0.89 3 16 0.00059 0.027 15.1 2.1 2 23 289 311 288 311 0.95 4 16 0.049 2.3 9.0 0.1 3 21 320 338 319 339 0.92 5 16 0.29 14 6.6 0.6 2 23 353 375 352 375 0.90 6 16 4 1.8e+02 3.0 0.0 2 23 384 406 384 406 0.90 7 16 0.97 45 4.9 1.1 1 23 460 483 460 483 0.93 8 16 0.049 2.3 9.0 0.0 2 23 530 552 529 552 0.91 9 16 0.011 0.51 11.1 0.8 1 21 562 582 562 583 0.94 10 16 0.0018 0.084 13.5 0.1 1 21 591 611 591 614 0.89 11 16 0.00084 0.039 14.6 5.3 1 23 619 640 619 641 0.95 12 16 2e-05 0.0009 19.7 0.7 1 20 651 671 651 673 0.95 13 16 5.5e-05 0.0025 18.3 0.4 1 23 680 703 680 703 0.97 14 16 0.0034 0.16 12.7 3.7 1 23 711 734 711 734 0.97 15 16 2.1 97 3.9 9.7 1 23 751 773 751 773 0.98 16 16 0.00032 0.015 15.9 1.2 1 23 779 802 779 802 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCTTTTAAACACAACACAAATTGTTGTATATGTTTAACCCAAAATCAAATTGAGACAACAACAAAACTAAGCTTCACAAGTagcaaaaaccaaaattcaATTTTGTGGCAACTGCAAAATCTGATTCCAGAAGTGGAATGGAAGGCCGAGTCCAAAATATGCTTACAGTGTACAGAACTAGTCGAAAAGTTTACAGAGTTCAAGAAATTGTGCATCGAGTCTAATTTGAAGcagcaaaacataaaaactgaGTATTCATTAGCAAAAGTAAGCCCAAGACAAGATTTAATCGAACCTGAAGCGTCTTGGGCTGTTGAAGTTAAACTAGAAGTTCCTTCTGAAAACACTACTATTTCAAACACCAAAATAAAACCTTTGGACAGTTTTTCTGATATAGAAGTAACACCAAGTGCTAATTCAGACTTTAACGATTCGGATAATGAGCCTTTACGGAAAATAGTAAAACCGAAACGCCGAAAAAAACCAAGTTATGAGTGCCAAACGTGTAACAAAGCGTTTTTGCGAAAAAATGACCTTACTAAGCATAGACGAACATGTTTAAAGTTGAGGACTAAAAAAAGTGTAGCTAAAACAGTGCAAGGTAGGTTTTCTTGTGCGTTTAACTGCCAGCAAAGCTTCTTAAACCAAAACGAATGCGACAAACATCAAAAAACATGCGAAGGGGTGCTTagcaccaaaaaaaaacgtgTCCTGTCAGGTGCTCCCAACATTGACAGAAGTACGCATGCGTGCGGCGCTTGCGCGCGTCGCTTTACAAGTCAACAAGTCCTAACAGCGCATGTCAGTGTCTGTACCGGCAACACCGCGCCTCCCTCTGATATTACTGACGTTAGAACTAAGTGTCCGCTATGTAATCGCGTCTttgcaaccaaaaacacattCAACACCCATTTTACCACAACACACCGCGACTACGACATCCAAAACATGTGCCAAGTCTGCCTCACGGTGTTCCCCACTGCGCAGGAGTTAACTGCGCATGTGCACACCCCTGAGGAAGTGGCTACAGCAACGCAGCAGCAACAACAGCAATGCGACACATGCCACGAAGTGTTTGATAGCGTACTGGAGCTAGGTAAGCATAGCTTCACCGCGCATGACACAGTGTGGGTGAGTGACGCCACGTGTGAAGTGTGCTTGGAGGTGTTCCCCAGCGATGCGGACGCTGTTAACCACTACAAAGACGCGCATGGCATTGATGAGGCCACGCTTATACGGCCGTACTTGTGCTGGCACTGCCCGGCAAGGTTTAGTCTCCTGGTGTTTAAGACTCATGTCAAGTACAACTTCAAGCGTAAGTTGGCCGCGGCGGCGAGACCGAAGGACATTAAGGAAGCATCGGATGTTAGGTATGTTTGCGATGATTGCAGGAAGCTGTGTCTTACTAGGAACGAGTTGGAGCTGCATGTTACTAAAGAGCATAGAGACAAGTATAACGGTTGTGTGCTGATTCAGTGCCGGCACTGTGCGGTGCAAAAGGCGCGGGTGCAAGCGTTGTATGCGCATGTGCGATCGCGACACATGCCAGCTGTCGAACTAAACGCTGATAAGCCGTGTTTGAGCTGTGAGGTATGCGATGCAACGTTTGCAACAGCGGAAAGCGTGATAGAGCACAGTGAGATGCAACATAACCTAGAAGGAAGCACAGTTACAGTGTACGCATGTCCGCACTGTCCGTTTAGGTGCGTTACACTAGCTACGTTCAAGACACACATCGCTACGTACTTTGAGGAGAAGGCGCGCTTTGTGTGCTCTACTTGTGGGGCTGGTTTTACCACCAAACAAAATTTGGGGACTCATGAAGACGGTGTGCATAAAAAACTGACACATGTTTGTGAGACGTGtgggaaaaaattcaaaaagaaatatttacagCTTCACATTCGAGTACATCACCCGGAGTTACTACCCCCGGAAAAGCAATTTAAATGCAACACCCACTGCGACAAAAGCTTCCCAAACGCCACAGAACTTCAACAACACATAGATCGTATTAACGGCGTTAAAAATTACGCTTGCCACGCATGCCCTCGAACTTTCGTACGCGAAATCGACCTAAATACGCATATTCGTCGAATCCACTCTGAAGGTCAAACCAAAAAACACGAATGCCCGGCTTGTCACCGCTTTTACAGAGACAAGGGTTATATGAAGTTACACATGAAGAAAGCGCATAACTTGGGGAGTTACAAGGTGACTAATCGGAATCTTTTACCGCGGGAATATACTTGTCATTTGTGTCAAAaggaatttttgcataagtgCCATTTAGACCAGCATTTGGACTCGCATGCGGGGATTAAAAGGTTTACGTGCCAGTTTTGTAAAGTGGCATATGCCACGAACCAGAGTCTTAAAGCGCATTTGAGAAAACAGCATAATTTTACGATGTAA
- Protein Sequence
- MSSFKHNTNCCICLTQNQIETTTKLSFTSSKNQNSILWQLQNLIPEVEWKAESKICLQCTELVEKFTEFKKLCIESNLKQQNIKTEYSLAKVSPRQDLIEPEASWAVEVKLEVPSENTTISNTKIKPLDSFSDIEVTPSANSDFNDSDNEPLRKIVKPKRRKKPSYECQTCNKAFLRKNDLTKHRRTCLKLRTKKSVAKTVQGRFSCAFNCQQSFLNQNECDKHQKTCEGVLSTKKKRVLSGAPNIDRSTHACGACARRFTSQQVLTAHVSVCTGNTAPPSDITDVRTKCPLCNRVFATKNTFNTHFTTTHRDYDIQNMCQVCLTVFPTAQELTAHVHTPEEVATATQQQQQQCDTCHEVFDSVLELGKHSFTAHDTVWVSDATCEVCLEVFPSDADAVNHYKDAHGIDEATLIRPYLCWHCPARFSLLVFKTHVKYNFKRKLAAAARPKDIKEASDVRYVCDDCRKLCLTRNELELHVTKEHRDKYNGCVLIQCRHCAVQKARVQALYAHVRSRHMPAVELNADKPCLSCEVCDATFATAESVIEHSEMQHNLEGSTVTVYACPHCPFRCVTLATFKTHIATYFEEKARFVCSTCGAGFTTKQNLGTHEDGVHKKLTHVCETCGKKFKKKYLQLHIRVHHPELLPPEKQFKCNTHCDKSFPNATELQQHIDRINGVKNYACHACPRTFVREIDLNTHIRRIHSEGQTKKHECPACHRFYRDKGYMKLHMKKAHNLGSYKVTNRNLLPREYTCHLCQKEFLHKCHLDQHLDSHAGIKRFTCQFCKVAYATNQSLKAHLRKQHNFTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -