Cbif015095.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987199.1:10206870-10209354[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0017 0.08 13.6 2.7 3 20 169 186 167 188 0.90 2 18 3.7 1.7e+02 3.1 3.7 1 21 209 230 209 231 0.91 3 18 0.77 35 5.3 0.6 1 20 250 269 250 271 0.89 4 18 0.0005 0.023 15.3 1.9 2 23 286 308 285 308 0.95 5 18 0.17 7.9 7.3 0.1 2 21 316 335 316 336 0.92 6 18 2.7 1.2e+02 3.5 2.0 2 19 353 370 352 375 0.84 7 18 4 1.9e+02 3.0 0.0 2 23 384 406 384 406 0.90 8 18 2.8 1.3e+02 3.5 1.9 1 21 417 436 417 441 0.90 9 18 1.6 76 4.2 4.1 1 19 457 475 457 480 0.90 10 18 0.11 4.9 8.0 0.5 2 19 525 542 524 547 0.87 11 18 0.0057 0.27 12.0 0.9 1 20 557 576 557 578 0.93 12 18 0.063 2.9 8.7 0.3 1 20 587 606 587 610 0.87 13 18 1.9e-06 8.9e-05 22.9 0.9 3 23 617 637 616 638 0.94 14 18 0.0017 0.078 13.6 0.3 1 20 648 668 648 670 0.94 15 18 7.5e-05 0.0034 17.9 0.9 1 23 677 700 677 700 0.98 16 18 4.4e-07 2e-05 24.9 0.9 1 23 707 730 707 730 0.98 17 18 0.00013 0.0061 17.1 2.7 1 23 747 769 747 769 0.95 18 18 0.0032 0.15 12.8 3.1 1 23 775 797 775 798 0.96
Sequence Information
- Coding Sequence
- ATGTCCACAATAATAAACAGTTCCCTTTGTTGTATATGTTTAACACATCATTGGGTAACACAAATAAGTCTTACAACTCCCCAAAAACCAATATCTATCCtccaaaatttgcaaaaaattgtcCCTGAAGTGGTATGGTCAGCTGACTCCAAGATATGTTTACAATGCACCGAACTGGTAGAAAAATTCGCAGAGTTTAAAGAATTGTGTATTAAATCTAGTTTAAGgcaagaaaatattaaaatagagGATAGTATTGTAGATAAAAGTGGTAAAGTGACACAAACGGTTCGAAATGTGGCTAAAATTGAACAAGCTAGTGAAAAAGTTATTGTAAAACAAGACTTTACCTTTGAAAACAGTGTTGTTTCAAGTTTAGTGTCCCAAGAAAGACTTTCTGACGCAGAAGCAGCTTTAAGCGAAGATACATTTGATAATGACAGCGATTATGAATCGCCAAAAAAGCACGTTTCGCAAAAACGTAAGAAAAACCTTTCACATTTATGCAAATCGTGCGGTAGatcattttctaaaaaaacagAACTTAAAAATCATTCAAACAAGTGTTCTAGTGctaaagtcaaaaaaatgaagctTAGAAGTGAGAAAAAAGCCCTAGAAAAATACCATTGCACCTTTAACTGCCAGCAAAGTTTTACCGACTTTGAAGAATGCCAAAATCATCAAGCAACCTGCCAAGGTCTTTTTAGCACCAACACTAAAAGAAGACGCGTTGATCAAAGCCAATTTCTCTGCACTAAATGCTCAAATCGTTTCACAAGTCAAGAAATCCTTACCGCGCACTTTAAAGACTGTTCTGGCGCATTTCCTACGGAAATAAGTGAGGTTAGAACCAAATGCCCCTTATGCAATCGCGTCTTTccaacaaaaaacacattcAACAACCATTTTACCACAACACACCGCGACTACGAGATCCAAAACACGTGCCAAGTCTGCCTAAACGTGTTCCCCACTGCGCAAGAGTTAACTGCGCATGTGCACACCCCTGAGGAAGTGGCTACAGCAACGCAAAGCACGCAGCAGCAACAACAGCAATGCGACACATGCCACGAAGTGTTTGACAGCGTACTGGAGCTAGGTAAGCATTGCTTCACCGCGCATGACACAGTGTGGGTGAGTGACGCCACGTGTGAAGTGTGCTTGGAGGTGTTCCCCAGCGATGCGGACGCTGTTAACCACTACAAAGACGCGCATGGCATTGATGAGGCCACGCTTATACGGCCGTACTTGTGCTGGCACTGCCCGGCGCGCTTTAACTATGTATACTTCAAGTCGCATGTACGGTATAACTTAAAGCACAAAACGTCGGCGCCCAAAGCAAGGAACTTAAAAGAGGACACTAAGTACCGATGCGACTTGTGCAGAAAGATTTGTTCGGCTAGAAACGAGCTCGAGACACATTGTTCGAAAGAACATGGCGATACGGAGGCTTTCCAATGTCGACACTGCGCTACACGTAAAAGTACTATCGCTTCATTGTCTAGACATGTAGTAAGCCACCATATTAACGGTGAAAACACCATACAAAACGCGGACAAACCTATAATCAGTTGTGAGGTATGCGACGCAAGCTTTACGTCCCCTAAAAGCATTATAGAACACTGCAAGGCGCAACATAACCTAGAGCAAACCTCAGTAACGCCGTACGCATGCCCACACTGCCCAAGACGCTGCGTTACACTAGCCACGTTCAAGGCCCACGTTTCTAAGATGTACCTCAAGGAAAAACAACGTTTTATGTGCCCTACCTGTGGCGCAGACTTTTGCACAAAGCAAGCAGCACAAGACCACGAAGACGGCGTTCACAAGAACATAACACGTATGTGCGAGTTATGTGGACGTATATTTAAGACACGTCCTAACCTACAAGCACACATGCGCGCGCATCACCCTGAGCTACGACCAGTTGACAAACAATACAGATGCGCTGGGCACTGTGAGCGGTCTTTCATATCAAAGGCCGAGTTGCAAATGCACTATGATCGTATTAACGGCGTTAAGAACTATACGTGTCACGCGTGTCCTAAGACATTCGTGCGCAAGCCTGATATGGATGCGCACATTCGTCGTACACACTCGGATGTACGCGAAACTTATAAGTGCGAAGAGTGTAACCAGGTTTTTAAAGATAAGTGGTACCTAAAGGTTCATATGAAGAAGGCGCATAACTTGGGGAGTGTTAAATGGGTGCCGCGGTGTCAGAGGCCAAGAAAACATGCGTGTCACTTGTGTCCTAAGGATTATTCGGATAAACGGGAGTTGCAACGACATTTGGATTCGCATGCGGGGATAAAACGGTATACGTGTCAGTTTTGCAATTCTGCGTATGCTAAACGGGAGAATCTGAAGTCGCATTTGTTGAAACATCATAATTATGTGCTTAGTGCGTCTACTTCTTTTGATTAA
- Protein Sequence
- MSTIINSSLCCICLTHHWVTQISLTTPQKPISILQNLQKIVPEVVWSADSKICLQCTELVEKFAEFKELCIKSSLRQENIKIEDSIVDKSGKVTQTVRNVAKIEQASEKVIVKQDFTFENSVVSSLVSQERLSDAEAALSEDTFDNDSDYESPKKHVSQKRKKNLSHLCKSCGRSFSKKTELKNHSNKCSSAKVKKMKLRSEKKALEKYHCTFNCQQSFTDFEECQNHQATCQGLFSTNTKRRRVDQSQFLCTKCSNRFTSQEILTAHFKDCSGAFPTEISEVRTKCPLCNRVFPTKNTFNNHFTTTHRDYEIQNTCQVCLNVFPTAQELTAHVHTPEEVATATQSTQQQQQQCDTCHEVFDSVLELGKHCFTAHDTVWVSDATCEVCLEVFPSDADAVNHYKDAHGIDEATLIRPYLCWHCPARFNYVYFKSHVRYNLKHKTSAPKARNLKEDTKYRCDLCRKICSARNELETHCSKEHGDTEAFQCRHCATRKSTIASLSRHVVSHHINGENTIQNADKPIISCEVCDASFTSPKSIIEHCKAQHNLEQTSVTPYACPHCPRRCVTLATFKAHVSKMYLKEKQRFMCPTCGADFCTKQAAQDHEDGVHKNITRMCELCGRIFKTRPNLQAHMRAHHPELRPVDKQYRCAGHCERSFISKAELQMHYDRINGVKNYTCHACPKTFVRKPDMDAHIRRTHSDVRETYKCEECNQVFKDKWYLKVHMKKAHNLGSVKWVPRCQRPRKHACHLCPKDYSDKRELQRHLDSHAGIKRYTCQFCNSAYAKRENLKSHLLKHHNYVLSASTSFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -