Cbif015069.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Cartodere bifasciata
Gene Symbol
-
Assembly
GCA_963920755.1
Location
OY987199.1:10027179-10030819[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.001 0.048 14.3 0.5 2 23 126 148 125 148 0.95
2 16 0.0051 0.23 12.1 0.4 1 19 153 171 153 171 0.98
3 16 0.0021 0.097 13.3 1.0 1 21 208 228 208 229 0.95
4 16 1.5e-05 0.00069 20.1 2.7 1 23 234 257 234 257 0.98
5 16 0.00055 0.026 15.1 1.0 1 23 265 288 265 288 0.97
6 16 0.014 0.65 10.7 1.9 1 20 303 322 303 323 0.95
7 16 1.8 81 4.1 0.2 2 21 339 358 339 359 0.91
8 16 0.01 0.48 11.1 1.0 3 23 405 426 403 426 0.95
9 16 6 2.8e+02 2.4 0.5 2 12 446 456 445 463 0.85
10 16 0.0021 0.096 13.3 3.1 1 23 507 529 507 529 0.94
11 16 7.1e-05 0.0033 17.9 1.8 1 23 535 558 535 558 0.95
12 16 0.0083 0.39 11.4 2.5 1 23 566 588 566 588 0.97
13 16 0.02 0.95 10.2 3.5 1 23 594 616 594 616 0.98
14 16 0.00066 0.03 14.9 3.4 1 23 622 645 622 645 0.98
15 16 0.00028 0.013 16.1 7.8 1 23 659 681 659 681 0.96
16 16 3.6e-05 0.0016 18.9 2.4 3 23 689 710 687 710 0.96

Sequence Information

Coding Sequence
ATGTGTGATTCGGTGTTAAATTGCTGTGTGTGCTTGAGTAGAGAGTTTTCCAAATCCATTAGTGATTGCGATGACAATAACTCAACCATATTAGGCTATTTACAAGCAATTGTACCTCAagttGAATGGGAAAGCAGTTTCAAAATATGCATCACGTGCCTAGGAAAGCTAGACGCAGTAAATAGCTTCATAGAATTATGCATAAAAAGCAGTTTAACTCGGAAAGAATACAAAGTAAAACTTGAAACAGAAGTAGATTTAAAAGATGTTGATCTTTTTGAAGAAGGCTTTGGAAATGACGCTGAAACAAATGAAAGCAGTAGGTCTGAAGACGAAGAAGAAGAAAGCGAGATATTTGCAGAAGAATGCTTTATCGTGTGTTTTAACTGCAAAAATAGCTTCAAATCTAGTGCAGAATTGTTTAATCACATCCAAAATGAACACAAAAGCGCTCAATACGAGTGTTTATACTGTCTGGAAGCGTTTTCAGACAGAAATGAACTGAAAAAACATGACAAAGACTGCAAAAAACAGTGCAAGATGTGTATTTCCAACTTTGATGAtaaaaaacgtttgtttaacCACTATGTTCAAGAACATTCAAGTAAAATTTCGCTCAGTTTTTCGTGTACGTATTGTGGCGACTATTTCTCATCAAAACAAGATCTAAAAGATCATTTAAAGcagtattttaaaacttttacatGTTTTAACTGCGACAAAAAGTTTACCTCCAAAGTAAAGCTAGTTTCACACATGAAAAAGGTGCATTTGATAAAAAACGAAGACGAATTCATTTGTGAGCATTGCCCTAGTGGGTTTGATACAGAAAAATTGCTACAAAAGCATCTAAAAAAGGCACATCCAGCAGAAGCAAGTACTGTTAGTTTGTACCGTAAAAAACGGCACCAGTGTAAGAAATGTTTCAAAGCATACACTTTGGAgaagagtttaaaaaaacatgttgttCAGTGTGATGGAATTCGTCGCCACAATCAAGACAACTCAAAAAACGTATGTGAATTGTGCTTAAGATCGTACTCAACGGAAAAAATACTCAAACAACATAAGAAAATCTGTAATGGGGTCATAAATGAAGAAGTTAAACCGAAGATAAGGTGTAAACTGTGCGATGTGTTGTTTCTCAAAACCGAAGAGCATAATGCCCATTTGGAATCCGAACATAATATAAACTTAAATCAAGAACATTTGTGCAAATATTGCTACATTGGGTTTGATTCTCAAGCTGAGTACACGCAGCACGTCAAAAGTGAACATTTGAAGGGCAAAAGAGGCCGAAAACGAAAGCACTCTAAGACACCAGATACAAAACTATCATGTGAATTATGCCCTGCTACTTTCTCCCACGTAAAAGAATGCATAGAGCATTGCGCAAGCATACACAAAATGGACGACAAATCAATTAAACCATACTCATGCGCAGAATGTAACAGACGATACACTTGCTCGAATAGCTATTTCGACCATTTCAGTTACTACCACAACCGAGTCCGATCGCATATTTGCTCATTTTGCGGCAAAAGCTTCCTAACCAAGAGCGACTTAATACACCACGAGTATATTCACAAGAACACACGTAATTATGCTTGTGAACAGTGCCCTAAGGCATTTAATACAAGCAAAAACCTTAGCACTCATAAATTGGTTTGCCATACAGACCCCAAATTATGGAAACACGTTTGTAACACATGTGAGAAACGATTCCCCATGAAATCAAAACAAGAAATACACGTCAAACGTCATGAAGGCGAGAAAAACTTCAGTTGTCACATATGCGGGAAGTTATTCGTGTGCGCAGCAGACTCGCGCAAGCACATGCGCACACATAGTAACGTTCGTGACTTTAAGTGCACGCACTGTGAACGTGAGTATAAAGAAAAGGCAACTTATGAACGTCATTTAAAGCGTGCACACAACATTGGTAACGCTAAAATACCAATAAGagtaaaaaaccatttttgtcaCATATGCCCTAAGAGTTTTTATGACAAAAACAAACTTGCAAAACATTTGTGTACGCACACCGGACAAAGACCTTTTGGGTGTGAGTTTTGCCCCAAAAAATTCACTGATAAGTCCTATTTGACGCATCATTTAAAACTAGAGCATAATGTTTATAAGAATAATGATGTCATAGTAATGGCGATTTAG
Protein Sequence
MCDSVLNCCVCLSREFSKSISDCDDNNSTILGYLQAIVPQVEWESSFKICITCLGKLDAVNSFIELCIKSSLTRKEYKVKLETEVDLKDVDLFEEGFGNDAETNESSRSEDEEEESEIFAEECFIVCFNCKNSFKSSAELFNHIQNEHKSAQYECLYCLEAFSDRNELKKHDKDCKKQCKMCISNFDDKKRLFNHYVQEHSSKISLSFSCTYCGDYFSSKQDLKDHLKQYFKTFTCFNCDKKFTSKVKLVSHMKKVHLIKNEDEFICEHCPSGFDTEKLLQKHLKKAHPAEASTVSLYRKKRHQCKKCFKAYTLEKSLKKHVVQCDGIRRHNQDNSKNVCELCLRSYSTEKILKQHKKICNGVINEEVKPKIRCKLCDVLFLKTEEHNAHLESEHNINLNQEHLCKYCYIGFDSQAEYTQHVKSEHLKGKRGRKRKHSKTPDTKLSCELCPATFSHVKECIEHCASIHKMDDKSIKPYSCAECNRRYTCSNSYFDHFSYYHNRVRSHICSFCGKSFLTKSDLIHHEYIHKNTRNYACEQCPKAFNTSKNLSTHKLVCHTDPKLWKHVCNTCEKRFPMKSKQEIHVKRHEGEKNFSCHICGKLFVCAADSRKHMRTHSNVRDFKCTHCEREYKEKATYERHLKRAHNIGNAKIPIRVKNHFCHICPKSFYDKNKLAKHLCTHTGQRPFGCEFCPKKFTDKSYLTHHLKLEHNVYKNNDVIVMAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-