Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987194.1:2468470-2481661[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00014 0.0064 17.0 1.2 1 23 233 255 233 255 0.97

2 16 0.0006 0.028 15.0 0.3 1 21 404 424 404 425 0.94

3 16 0.039 1.8 9.3 0.8 1 23 439 461 439 461 0.96

4 16 0.0092 0.42 11.3 2.2 1 23 489 511 489 511 0.97

5 16 0.0034 0.16 12.7 1.4 1 23 517 539 517 539 0.96

6 16 0.00034 0.016 15.8 2.3 1 23 545 567 545 567 0.97

7 16 0.015 0.68 10.7 4.5 1 21 738 758 738 759 0.92

8 16 0.17 7.7 7.4 0.8 1 23 773 795 773 795 0.95

9 16 0.0004 0.018 15.6 1.0 1 23 801 823 801 823 0.96

10 16 2.5e-05 0.0012 19.4 1.0 1 23 987 1009 987 1009 0.96

11 16 0.0026 0.12 13.0 0.4 1 23 1022 1044 1022 1044 0.96

12 16 0.17 8 7.3 1.2 1 23 1050 1072 1050 1072 0.95

13 16 0.0055 0.25 12.0 1.0 1 23 1078 1100 1078 1100 0.96

14 16 0.11 5.1 7.9 3.6 1 20 1106 1125 1106 1128 0.92

15 16 0.00069 0.032 14.8 1.4 1 23 1134 1156 1134 1156 0.96

16 16 2.5e-05 0.0012 19.4 1.0 1 23 1317 1339 1317 1339 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00014	0.0064	17.0	1.2	1	23	233	255	233	255	0.97
2	16	0.0006	0.028	15.0	0.3	1	21	404	424	404	425	0.94
3	16	0.039	1.8	9.3	0.8	1	23	439	461	439	461	0.96
4	16	0.0092	0.42	11.3	2.2	1	23	489	511	489	511	0.97
5	16	0.0034	0.16	12.7	1.4	1	23	517	539	517	539	0.96
6	16	0.00034	0.016	15.8	2.3	1	23	545	567	545	567	0.97
7	16	0.015	0.68	10.7	4.5	1	21	738	758	738	759	0.92
8	16	0.17	7.7	7.4	0.8	1	23	773	795	773	795	0.95
9	16	0.0004	0.018	15.6	1.0	1	23	801	823	801	823	0.96
10	16	2.5e-05	0.0012	19.4	1.0	1	23	987	1009	987	1009	0.96
11	16	0.0026	0.12	13.0	0.4	1	23	1022	1044	1022	1044	0.96
12	16	0.17	8	7.3	1.2	1	23	1050	1072	1050	1072	0.95
13	16	0.0055	0.25	12.0	1.0	1	23	1078	1100	1078	1100	0.96
14	16	0.11	5.1	7.9	3.6	1	20	1106	1125	1106	1128	0.92
15	16	0.00069	0.032	14.8	1.4	1	23	1134	1156	1134	1156	0.96
16	16	2.5e-05	0.0012	19.4	1.0	1	23	1317	1339	1317	1339	0.96

Sequence Information

Coding Sequence: ATGGCTAGTTTACAAGATACATTCCAAAGCAAGGACCTCTGCAGAATATGTCTAAGCAAAAGTGACCAAATGTTGGCGTTACATGAAGAGTTGGGCCCCCATACATCTATCTCGGTCCTCACTGCTTTACAATCTGTTATGGCTGTTAAGTTGAACGAATTCAAAGCATATCCTCAACTAATATGCAGCATTTGCTTGAGCTCACTTACAATAGCCTATGATTTAAAACTACAATATCATGAGTCTGATAAGAGGATAACTAGTCTACTGAACAAAGCCATGGAAGAATTACCTGCAATAATCAAAGTGGAAAATGAAAGAGTTACCTCAGGAGATACCGTTGTCGAACTTACGGAGGGGCAAAGTAAATACTTAGACTCAGAATACAATATTCTTATTAAAGGGGAAATAAGCGACTTTCCAGATGATTTAAGCAATCCTGCTAACATTAAATCAGAttgcaaacaaaatattaaacagcaaattgataaaaatattgAAATACCCGATGATGTGTCTGCAGAGAACATCTCTACATTGAGCCATgatattaaaatagaaatagagGAATGCGACTTAAGCCAAATAAAGATGGAAACCGAAGAAAGCAACTCAACATCAACAAGTAGTGAACAAACTAAACATGTAACTAACAATACTCTTGAAGACGATCTTTGTGTTAAACAACCTGAACAATTTATTTGCGCCAGTTGTAATGAGAGTTTTACTTTCAAATACAGTTTAATACGACATATTAAGCAGCATCGAAAAGAAGAGGAATCTAATACTGCCATGGAAGAATTACCTGCAGTAATCAAAGTGGAAAATGAAAGAGTTACCTCAGGTGATACCGTTGTCGAACTTACGAAGGTGCAAAGTAAATACTTAGACTCAGAATACAATATTACTATTAAACAGGAAATAAGCGATTTCTCAGATTATTCAAGTAATCATGGTATCATCAAATCAGTTTGCGAACAAGATATTAAACAGGAACTTGAGGAAAACATTGAAGTATCCGATTATGTGTCTGCAGAGGACATCTCTACATTGAGCCATGATATTAAAACAGAAATAGAGGAATGTGACTTGAGCCAAATAAAGATGGAAACCGAAGAAAGCAACTCAACATCAACAAGTAGTGAACAAACTAAACATGTAACTAACAATACTCTTGAAGACGATCTTTGTGTTGAACAACCTGAACAATTTATTTGCGCCAGTTGTAATGAGAGTTTTACTTCCAAATACAGTTTAATACAGCATATtaagcaaaaagaaaaaagaaggAAGTCTAATTCTGGTAGGAAGACATATgtttgccagtactgtccatacaaagCTTTGCGATCAAATAATGTTAGGAGACATATGCTAAGACATACTGGGGAAAAGCCTTacgcttgccagtactgtccttATTTAGGTATTCAACATATACTAATACATACTGGAGAGGAGCCatatgcttgccagtactgtccatacaaaaCAAGAACATCACGTCGTCTTAGAAAACATAAGTTAATACATACTCAGAAAAAGgcacatgcttgccagtactgtccatacaaagCCGTATATTTAAACCAGCTTAAAAGACacatgttaacacatactggagAGGGGACACAttcttgccagtactgtccatttACAACCGGACAAGAAAGTAATCTTAAGAcacatatgttaacacatactgtgAAAAAGcaacatgcttgccagtactgtccatacacTACTGGATCagttttgcaaatatttataTGGTTTATTGCTTTTGGAGCCATGGAAGAATTACCTGCAGTAATCAAAGTGGAAAATGAAAGAGTTACCTCAGGAGATACCGTTGTCGAACTTACGGAGGGGCAAACCAAATACTTAGACTCAGAATACAATATTACTATTAAACAGGAAATAATAAGCGATTTCTCAGATGATTCAAGTAATCATGGTATCATCAAATCAGCTTGCGAACAAGATATTAAACAGGAACCTGAGGAAAACATAGAAGTACCCGATTATGTGTCTGCAGAGGACATCTCTACATTGAGCCATGATATTACAACAGAAACAGAGGAATGTGACTTGAGCCAAATAAAGAAGGAAACCGAAGAAAGCAACTCAACATCAACAAGTAGTGAACAAACTAAACATGTAACTAACAATACTCTTGAAGACGATCTTTGTGTTGAACAAACTGGAGAATTTACTTGTGCCTGTTGTAATAAGAGTTTTACTTCCAAATACAGTTTAAAACAGCATACGaagcaaaaagaaaaaagaagaaaGTCCAATAATGGTGAGAAGACACATGTTTGCCAATACTGTCCATACAAAGCTTTGCGATTAAGTGATGTTAAGAGACATATGTTAATACATACTGGTGAGAAgccacatgcttgccagtactgtccatacaaagCAACGCAAGCCAGTAGTCTTAAATtacatatgttaacacatactggggaaAAGCCACATTCTTGCCAGTACTGTTCATTCAAAACTACACAAAGGATAACTAGTCTACTGAACAAAGCCATGGAAAAATTACCTGCAATAATCAAAGTGGAAAATGAAAGAGTTACCTCAGGAGATACCGTTGTCGAACTTACGGAGGGGCACAGTAAATACTCAGTCTACAATATTGCTATAAAAGAGGAAATTAGCGACTTTTCAGATGATTCAAGTAACCATGCTAGCATCAAATCAGCTTGCGAACAAGATATTAAACAGGAACTTGAGGAAAACATTGAAGTACCCGATTATATGTCTGCAGAGGACATCTCTACATTGAGCCATGATATGAAAACAGAAATAGAGGAATGCGACTTGAGCCAAATAAAGATGGAAACCGAAGAAAGCAACTCAACATCAACAAGTAGTGAACAAACTAAACATGTAACTAACAATACTCTTGAAGACGATCTTTGTGTTGAACAACCTGAACAATTTATTTGCGCCAGTTGTAATAAGAGTTTTACTTCTAAATACAGTTTAATAAAGCATATTGAGCAGCATAAAAGCGGAGGGAAGTCTATTACTGGTGAGAAGacacatgcttgccagtactgtccataccAAGCCGCCCAAGCAAGAAATCTTAAACAACATATGTTAATACATACTGGAAAGAAGACGCACgtttgccagtactgtccatacaaagCTTTGCGATCGAATGATCTTAGCAGACATATTTTAAGACATACTGGAGAAAAgccacatgcttgccagtactgtccatacaaagCTTCGCTATCGAATGATCTCAGGAGACATattttaacacatactggAGAAAAGCCACATGcctgccagtactgtccatacaaaaCTAGAAACGTGCGTAATTTAAAAAGACATGTATGTCCGCATACAAATGAAGAGgcacatgcttgccagtactgtccatacaaagCCGTATATTTGAGTCAGCTTAAAAGACacatgttaacacatactggagAGGAGACACActcttgccagtactgtccatttACAACCAGACAAGAAAACATGGAAGAATTACCTGCAATaatcaaagtaaaaaatgaaacaattaCCTCAGAAGATACCGTTGTCAAACTTACGAAGGAGCAAAGTAAATACTTAGACTCTAATATTATCATTATAGAAGTGAAACAAGAAGTATGCAGTTTTCcagataatttaaataaccaTGTCAGCATCGAATCAGCTTGCAAAAATTTAGATATTAAACAGGAACTTGAGGGAAACATTGAAGTACCCGATGATGTGTCTGCAGAGGACATCTCTACATTGTGCcatgattttaaaatagaaatagagGAATGCGACTTGAGCCAAATAAAGATGGAAACCGAAGAAAGCAACTCAACATCAACAAGTAGTGAACAAACTAAACATGTAACTAACAATACTCTTGAAGACGATCTTTGTGTTGAACAACCTGAACAATTTATTTGCGCCAGTTGTAATAAGAGTTTTACTTCTAAATACAGTTTAATAAAGCATATTGAGCAGCATAAATGCGAAGAGAAGTCTATTACTGGTGAGAAGACACAtacttgccaGAGGATAACTAGTCTACTGAACAAAGCCATGGAAGCATTACCTGCAATAATCAAAGTGGAAACTGAAAGAGTTACCTCAGGAGATACCGTTGTCGAACTTACGGAGGGGCAAACCAAATACTCAGTCTACAATATTGCTATAAAAGAAGAAATTACAGACTTTTCAGATGATTCAAGTAATCATGCTAGCATCAAATCAACTTGCGAACAAGATATTAAACAGGAAATTGGGGAAAACATTGATTTACCTGATTATGTGTCTGCAGAGGACATCTCTACATTGAGCCATGATattaaaacagaaaataaaGAATGCGGCTTAAGTCAAATAAAGATGGAAACCGAAGAAAGCAACTCAACATCAACAAGTAGTGAACAAACTAAACATGTAACTAACAATACTCTTGAAGACGATCTTTGTGTTGAACAACCTGAACAATTTATTTGCGCCAGGAAAAAGAAGAAAGTCTAA
Protein Sequence: MASLQDTFQSKDLCRICLSKSDQMLALHEELGPHTSISVLTALQSVMAVKLNEFKAYPQLICSICLSSLTIAYDLKLQYHESDKRITSLLNKAMEELPAIIKVENERVTSGDTVVELTEGQSKYLDSEYNILIKGEISDFPDDLSNPANIKSDCKQNIKQQIDKNIEIPDDVSAENISTLSHDIKIEIEECDLSQIKMETEESNSTSTSSEQTKHVTNNTLEDDLCVKQPEQFICASCNESFTFKYSLIRHIKQHRKEEESNTAMEELPAVIKVENERVTSGDTVVELTKVQSKYLDSEYNITIKQEISDFSDYSSNHGIIKSVCEQDIKQELEENIEVSDYVSAEDISTLSHDIKTEIEECDLSQIKMETEESNSTSTSSEQTKHVTNNTLEDDLCVEQPEQFICASCNESFTSKYSLIQHIKQKEKRRKSNSGRKTYVCQYCPYKALRSNNVRRHMLRHTGEKPYACQYCPYLGIQHILIHTGEEPYACQYCPYKTRTSRRLRKHKLIHTQKKAHACQYCPYKAVYLNQLKRHMLTHTGEGTHSCQYCPFTTGQESNLKTHMLTHTVKKQHACQYCPYTTGSVLQIFIWFIAFGAMEELPAVIKVENERVTSGDTVVELTEGQTKYLDSEYNITIKQEIISDFSDDSSNHGIIKSACEQDIKQEPEENIEVPDYVSAEDISTLSHDITTETEECDLSQIKKETEESNSTSTSSEQTKHVTNNTLEDDLCVEQTGEFTCACCNKSFTSKYSLKQHTKQKEKRRKSNNGEKTHVCQYCPYKALRLSDVKRHMLIHTGEKPHACQYCPYKATQASSLKLHMLTHTGEKPHSCQYCSFKTTQRITSLLNKAMEKLPAIIKVENERVTSGDTVVELTEGHSKYSVYNIAIKEEISDFSDDSSNHASIKSACEQDIKQELEENIEVPDYMSAEDISTLSHDMKTEIEECDLSQIKMETEESNSTSTSSEQTKHVTNNTLEDDLCVEQPEQFICASCNKSFTSKYSLIKHIEQHKSGGKSITGEKTHACQYCPYQAAQARNLKQHMLIHTGKKTHVCQYCPYKALRSNDLSRHILRHTGEKPHACQYCPYKASLSNDLRRHILTHTGEKPHACQYCPYKTRNVRNLKRHVCPHTNEEAHACQYCPYKAVYLSQLKRHMLTHTGEETHSCQYCPFTTRQENMEELPAIIKVKNETITSEDTVVKLTKEQSKYLDSNIIIIEVKQEVCSFPDNLNNHVSIESACKNLDIKQELEGNIEVPDDVSAEDISTLCHDFKIEIEECDLSQIKMETEESNSTSTSSEQTKHVTNNTLEDDLCVEQPEQFICASCNKSFTSKYSLIKHIEQHKCEEKSITGEKTHTCQRITSLLNKAMEALPAIIKVETERVTSGDTVVELTEGQTKYSVYNIAIKEEITDFSDDSSNHASIKSTCEQDIKQEIGENIDLPDYVSAEDISTLSHDIKTENKECGLSQIKMETEESNSTSTSSEQTKHVTNNTLEDDLCVEQPEQFICARKKKKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -