Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987193.1:1222491-1227965[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.4e-05 0.0016 19.0 2.4 1 23 224 246 224 246 0.98

2 12 6.5e-05 0.003 18.1 5.6 1 23 252 275 252 275 0.97

3 12 0.00045 0.021 15.4 1.2 3 23 284 305 283 305 0.96

4 12 0.00012 0.0054 17.3 2.4 2 23 312 334 311 334 0.93

5 12 0.00041 0.019 15.5 1.5 2 23 347 369 346 369 0.97

6 12 0.015 0.68 10.7 1.7 1 23 377 400 377 400 0.96

7 12 0.022 1 10.1 3.5 2 23 413 435 412 435 0.97

8 12 0.65 30 5.5 0.1 3 23 458 477 457 477 0.95

9 12 2.3e-05 0.001 19.5 1.0 1 23 483 505 483 505 0.98

10 12 2.9e-05 0.0013 19.2 1.7 1 23 511 533 511 533 0.99

11 12 0.00075 0.035 14.7 11.2 1 23 539 561 539 561 0.98

12 12 2.9e-05 0.0014 19.2 5.2 1 23 567 589 567 589 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.4e-05	0.0016	19.0	2.4	1	23	224	246	224	246	0.98
2	12	6.5e-05	0.003	18.1	5.6	1	23	252	275	252	275	0.97
3	12	0.00045	0.021	15.4	1.2	3	23	284	305	283	305	0.96
4	12	0.00012	0.0054	17.3	2.4	2	23	312	334	311	334	0.93
5	12	0.00041	0.019	15.5	1.5	2	23	347	369	346	369	0.97
6	12	0.015	0.68	10.7	1.7	1	23	377	400	377	400	0.96
7	12	0.022	1	10.1	3.5	2	23	413	435	412	435	0.97
8	12	0.65	30	5.5	0.1	3	23	458	477	457	477	0.95
9	12	2.3e-05	0.001	19.5	1.0	1	23	483	505	483	505	0.98
10	12	2.9e-05	0.0013	19.2	1.7	1	23	511	533	511	533	0.99
11	12	0.00075	0.035	14.7	11.2	1	23	539	561	539	561	0.98
12	12	2.9e-05	0.0014	19.2	5.2	1	23	567	589	567	589	0.98

Sequence Information

Coding Sequence: ATGCACCAGACAAGAAAAACACAGCAGGGCAGTTTTAATGACAATCTTTTGGATGTGTACACCAAAATTACTTCACGAAAGCTGCAGGACTGGAATAACATGCCTAAGATAATTTGCCAAAGATGCTCAACTCAGTTAACGTCCATAAacgattttattttgaagTGTGTGGATGCAGATGAAAAGTTTAACAACATAGCTCAAGCAATTCTAACTCTGAGCAATGAtaatgaaattaatttaagtaaccTTAAGGTTGAAGGTGAAGTTATTGAAGTAATCGAGGttcATGTCTTGGATGACGAAGAATTGGAAATAAATAACGCAGGCATTAAAGATGAAATAGACATTTCTGTCGATGATTGGATGGACTCTATTTCTGCTCTTGAAGCAACTGAAGTAAAAACCACACTAAATAAGACCGAAGAAGATAAAACTCTACAagaaaatgaatttaaaagacCTCAACGcacaaacaaaagaaaaatacttaacgatgaagaagaagaagaccCTCCAAAAAAGTCCAgatacaaaaacaaaagaatacATCTTCCACCTGTAACGTGTTTTACATgcaaaatgaaatttaaaagagGGGCACCAGGCAAGGCGCGTCAAGAGCTTGAGGAGCACTACAAAACCAGTGAGGGCTGTAAACCCCAAGAGTTTGAATGTCCACATTGTCCGAAAACGTGCAGAAACAAATCAGATATGGATCTTCATATGGATGTCCATTCAACAGATCTTAAATACAAGTGCAAAGAATGTGAATTGTGTTTTAAACAAGAATCTAGTCTTACGCGACATTTTAATAGGAAACATAACGCAGATGCAGAACCTTCACTGTGCGAATTTTGCCCCAAAAGTTACcctaatttaagaaatctacaggcTCATTTACAACAATGTCACCCAGAAGAACTGAACATAACCTGCAATTTATGCCATAAAAAATTCAACCACGAAAGGGGGCTCCAACGCCACATGGCAGCCATTCACAAAGACAAAAAGAAAGTcgaaaataaacaagaaattacatgcaacTTATgctcaaaaaaattcataaacaCAGTAGGCCTCCATTTGCACATGCGAAGAGTGCATTTAGATGGAACTAAAATATACCATAACTGTAATTTATGCCCTCGAAAATTCTTAAATGAACTGTGGCTAAAACGGCATATGGACACAAATCATCCGAACGGAGAAGCGGACACAAAAAGCGTGTGTATTAAATGTACTTTCTGTCCTAAGATGTATAACAGCGTTAAGTATCTCAAGTGCCACATGAGAAAAATTCATTCGTACATAGACTCAACTCATAAGACAAGTACacagataaaaaaaagatatgtCAGGTTCACGTTGTGTAACATATGTGGTATTAAAGTAAGGGCTGGTGTTTTTCAAGTTCACCTCAACAAACACAAAGGAATAAGACCTTTTGAATGCGATACCTGCTCTAAAAAGTTCTACACTAAAGCAGAACTAAAAATGCACGTTAATATACATTTAAGCATCAAACCCTTCAAATGTAATAAATGTCCTTCGGCTTTTTCGGTAAGCTCCAGTCTTTATACCCATTACAGAACGCATACAGGAGAAAAACCTTTCGAATGTCCACACTGCCATAAATGCTTTGGAAGAAGACATCATCTTGTCCAACATAGTCGCATCCATACAGGTGAACGGCCTTTTGAGTGTCCCCACTGTGATGAAACCTTCACTTATCTTTCTACTTTATGTCTCCATAAGAAAAcacacattaaaaataaatttgttactGATAAGCAAAACTAG
Protein Sequence: MHQTRKTQQGSFNDNLLDVYTKITSRKLQDWNNMPKIICQRCSTQLTSINDFILKCVDADEKFNNIAQAILTLSNDNEINLSNLKVEGEVIEVIEVHVLDDEELEINNAGIKDEIDISVDDWMDSISALEATEVKTTLNKTEEDKTLQENEFKRPQRTNKRKILNDEEEEDPPKKSRYKNKRIHLPPVTCFTCKMKFKRGAPGKARQELEEHYKTSEGCKPQEFECPHCPKTCRNKSDMDLHMDVHSTDLKYKCKECELCFKQESSLTRHFNRKHNADAEPSLCEFCPKSYPNLRNLQAHLQQCHPEELNITCNLCHKKFNHERGLQRHMAAIHKDKKKVENKQEITCNLCSKKFINTVGLHLHMRRVHLDGTKIYHNCNLCPRKFLNELWLKRHMDTNHPNGEADTKSVCIKCTFCPKMYNSVKYLKCHMRKIHSYIDSTHKTSTQIKKRYVRFTLCNICGIKVRAGVFQVHLNKHKGIRPFECDTCSKKFYTKAELKMHVNIHLSIKPFKCNKCPSAFSVSSSLYTHYRTHTGEKPFECPHCHKCFGRRHHLVQHSRIHTGERPFECPHCDETFTYLSTLCLHKKTHIKNKFVTDKQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -