Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987197.1:19266978-19269665[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 2.6 1.2e+02 3.6 0.2 2 23 10 32 9 32 0.92

2 26 0.014 0.65 10.7 1.5 1 23 38 61 38 61 0.98

3 26 0.0003 0.014 16.0 2.0 1 23 67 90 67 90 0.95

4 26 0.024 1.1 10.0 2.8 1 23 95 118 95 118 0.96

5 26 0.00084 0.039 14.6 2.0 1 23 123 146 123 146 0.97

6 26 0.0066 0.3 11.8 0.5 1 23 152 175 152 175 0.98

7 26 0.026 1.2 9.9 5.8 2 23 182 204 181 204 0.96

8 26 0.0025 0.11 13.1 0.5 2 23 211 233 210 233 0.96

9 26 0.067 3.1 8.6 0.8 2 23 240 262 239 262 0.95

10 26 0.014 0.63 10.8 1.0 2 23 269 291 268 291 0.95

11 26 0.81 38 5.2 0.6 2 23 298 320 297 320 0.95

12 26 0.0011 0.05 14.2 0.3 2 23 327 349 326 349 0.94

13 26 0.2 9.2 7.1 2.3 2 23 356 378 355 378 0.94

14 26 0.0037 0.17 12.5 5.2 2 23 385 407 384 407 0.96

15 26 0.25 12 6.8 2.7 1 23 413 436 413 436 0.95

16 26 0.006 0.28 11.9 0.8 2 23 443 465 442 465 0.95

17 26 0.051 2.3 9.0 3.6 2 23 472 494 471 494 0.93

18 26 0.039 1.8 9.3 0.4 2 23 501 523 500 523 0.96

19 26 0.0097 0.45 11.2 1.7 2 23 530 552 529 552 0.94

20 26 0.21 9.6 7.0 0.5 2 23 559 581 558 581 0.94

21 26 0.041 1.9 9.3 3.2 2 23 588 610 587 610 0.92

22 26 1.4 63 4.5 2.4 1 23 616 639 616 639 0.96

23 26 0.35 16 6.3 0.6 2 23 646 668 645 668 0.93

24 26 0.0015 0.068 13.8 5.7 2 23 675 697 674 697 0.96

25 26 1.1 49 4.8 3.1 1 23 703 726 703 726 0.96

26 26 1.1 49 4.8 0.0 2 23 733 755 732 755 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	2.6	1.2e+02	3.6	0.2	2	23	10	32	9	32	0.92
2	26	0.014	0.65	10.7	1.5	1	23	38	61	38	61	0.98
3	26	0.0003	0.014	16.0	2.0	1	23	67	90	67	90	0.95
4	26	0.024	1.1	10.0	2.8	1	23	95	118	95	118	0.96
5	26	0.00084	0.039	14.6	2.0	1	23	123	146	123	146	0.97
6	26	0.0066	0.3	11.8	0.5	1	23	152	175	152	175	0.98
7	26	0.026	1.2	9.9	5.8	2	23	182	204	181	204	0.96
8	26	0.0025	0.11	13.1	0.5	2	23	211	233	210	233	0.96
9	26	0.067	3.1	8.6	0.8	2	23	240	262	239	262	0.95
10	26	0.014	0.63	10.8	1.0	2	23	269	291	268	291	0.95
11	26	0.81	38	5.2	0.6	2	23	298	320	297	320	0.95
12	26	0.0011	0.05	14.2	0.3	2	23	327	349	326	349	0.94
13	26	0.2	9.2	7.1	2.3	2	23	356	378	355	378	0.94
14	26	0.0037	0.17	12.5	5.2	2	23	385	407	384	407	0.96
15	26	0.25	12	6.8	2.7	1	23	413	436	413	436	0.95
16	26	0.006	0.28	11.9	0.8	2	23	443	465	442	465	0.95
17	26	0.051	2.3	9.0	3.6	2	23	472	494	471	494	0.93
18	26	0.039	1.8	9.3	0.4	2	23	501	523	500	523	0.96
19	26	0.0097	0.45	11.2	1.7	2	23	530	552	529	552	0.94
20	26	0.21	9.6	7.0	0.5	2	23	559	581	558	581	0.94
21	26	0.041	1.9	9.3	3.2	2	23	588	610	587	610	0.92
22	26	1.4	63	4.5	2.4	1	23	616	639	616	639	0.96
23	26	0.35	16	6.3	0.6	2	23	646	668	645	668	0.93
24	26	0.0015	0.068	13.8	5.7	2	23	675	697	674	697	0.96
25	26	1.1	49	4.8	3.1	1	23	703	726	703	726	0.96
26	26	1.1	49	4.8	0.0	2	23	733	755	732	755	0.95

Sequence Information

Coding Sequence: ATGGAGGCCAGTCCAGAGAGCTTATTAAAATGTGGCATATGCAGTTTTGAGACAGTTAATGAAGACAGTATGCTATCTCATGCTAACAACAGGCATACCCGTGAAAAGaagtttaaatgttttatgtgCAGTTATACAGCAGCTAAAAATGATACGCTGGAACACCATGTTAATACAGTGCACACTAGTGAGAACATATTTAACTGTGCATTATGCAGTTATGTGACATCACAGAAATATAACCTAAGACGACATTTAAGGTTCAATCATTCACAGGAGAAATTTAACTGTGAAATGTGCAGTTTCGAGACAACACGGAAAGATATGCTAcgaaatcattttaaatccaAACATTCACCGGATAACTTTAAATGTACAATATGCAACTATGAAACAAGCAAAAGATATCGCCTGAAAAACCATATTAATTCAATACACACTCGTGAGCAGTTATTTAAGTGTAATATGTGCAGTTATGAGGCCACACGAAACGAAAGTTTATTAGGACATATTAAAAGCCAACATACGCGTCAAGATTTGATTAAATGTGCAATGTGCAGTTATGAAACAACAAACAAACATCATTTTAATAAACACATGAATAACAAGCATACTCGAGAAAACCTTGTGCAATGTGCCACGTGCAGTTATGAAACAACTTCCAAGGAGCAGTTAATAAAGCACATTAACAGTAAACATAACCGTGAAAACCTGTTGCAATGTGCTATGTGCAGTTATAAAGCTGTAACTAAGGAAAAGCTAAGAAATCATACCAACAGCCAACATACTCGTGAAAACCTATTGCAATGTGCTATGTGCAGTTATAAAACAACTACTAACTATCTCTTAAAACTGCACGTTAATTCCAAACACACAGATGGAACCGTTTTAAAATGCGATATGTGCAGTTTTGGTACCACAGACaatcaaatattaaaatatcacaTGAAAAATGTGCATACACGTGAGAATGTGCTAAAATGCACCATGTGCAGTTATGAAACGTCAAGAAAAGACGCCCTTAGTAAACACATAAATGCTGTTCACACTCGAGAGAATTTGTTGAAGTGTTCTATGTGCAGTTACGAAACAGCAAATCAATGTAACATGAAGCAGCATGTTATATCTAAACACGACactgaaaaaatgttacaatGTGCTATGTGCAATCACAAAACATCAAACAACAGGGATTTAAAACGGCACATTAACACATGTCACACGCAAAACGAGGTTTTTAACTGCACTATGTGCAGTTTTAAAACAAcagaaaaatctaattttgacAATCACGTAAACAACAAACATACCCGAGAAGAAGTTTTACAATGTGCTATGTGCAGTTATGAATCAACTTCCAAGGTGCAGTTAACAAGACACATTACTAGAAAACATTATCCTGAAAACATGTTACAATGTACTATGTGCAGTTATAAAACAACTAATAACTTTGACTTAAACCACcacgttaattttaaacatacagGTGAAACCGTTTTAACATGCGCAATGTGCAGTTATGATACCACAGacaaaattacattaaaatatcATATTAAAAGCGTTCATACACGTGAGAATTTGCTTAAATGCACCATGTGCAGTTATGAAACATTTAGAAAAAACGACTTTAAGAAACACATGAATGCTGTGCACACTCGAGCGAATTTGTTAAAGTGTTCTATGTGCAGTTTCGAATCAGCACAACTAGGTAACATGAAAAAGCATGTTATATCTAAACACGAcactgaaaaaatgttaaaatgcaTTATGTGCAGTTACAAAACGTCAAATAGCAGTCATTTAAAACTGCACATTAATCGCCGCCACACGCAAAACGAGATTTTTATGTGCTACAAGTGCAATTATACAGCTACAGTTAAAGGCACGTTGCAATGCCACATTAACGTGAAACATAATCCGGAAAATTTAATACCATGTGCTATGTGCAGTTTTGAAACAGTACATCAATATAACATGAAGCAGCATGTTATATCTAAACATGATCCtgagaaaatgttaaaatgcaCTATGTGCAGTTACAAAACAGCAAATAGCAGCCATTTAAAGCGGCACATTAACAGCTGCCACACTTATAACGAGATTTTTTACTGCGCAAATTGCAGTTATAAAACTACAGCTAAAGACAATCTACAATGCCACATTAACATGAAACATTTTCGGGAAAATTTAATACCATGTGCTATGTGCAGTTATGCAGCCCCAACTGAATCAAGGCTCATGGATCATATACAAGTAAAACATGGTGAAAACAAAAAGACAATTTCTagtggtaaaaaaagaaaaaggcaTTCCAGTGAACATTCTGACACTGATGAAGAAATAACTGACATGACACATGAAATAAAATGTCCACCTTCACCAGTCCCTAGTTTACATTTAGATGCTGATAACGAAAGTATCATTTACAATGAGGGAATAAGTATAAAGTCTGAAAATGATGGGCATTTCAATTATTCTGAAAATGATACTAGTTTTAATAATGTAGgtctaataaatattaaatctgAAGATGCTACTCATTCCAATTATGGTGCGCCAAATGGTATTATTTACAACGATGGACTAAAAGGTGAAGAAtctaagaataataaaaattcttatGACGAAAATAATGTTCCCAAAGAATTTCAATGTTTTGTAACATTGGTTAAATTaagattataa
Protein Sequence: MEASPESLLKCGICSFETVNEDSMLSHANNRHTREKKFKCFMCSYTAAKNDTLEHHVNTVHTSENIFNCALCSYVTSQKYNLRRHLRFNHSQEKFNCEMCSFETTRKDMLRNHFKSKHSPDNFKCTICNYETSKRYRLKNHINSIHTREQLFKCNMCSYEATRNESLLGHIKSQHTRQDLIKCAMCSYETTNKHHFNKHMNNKHTRENLVQCATCSYETTSKEQLIKHINSKHNRENLLQCAMCSYKAVTKEKLRNHTNSQHTRENLLQCAMCSYKTTTNYLLKLHVNSKHTDGTVLKCDMCSFGTTDNQILKYHMKNVHTRENVLKCTMCSYETSRKDALSKHINAVHTRENLLKCSMCSYETANQCNMKQHVISKHDTEKMLQCAMCNHKTSNNRDLKRHINTCHTQNEVFNCTMCSFKTTEKSNFDNHVNNKHTREEVLQCAMCSYESTSKVQLTRHITRKHYPENMLQCTMCSYKTTNNFDLNHHVNFKHTGETVLTCAMCSYDTTDKITLKYHIKSVHTRENLLKCTMCSYETFRKNDFKKHMNAVHTRANLLKCSMCSFESAQLGNMKKHVISKHDTEKMLKCIMCSYKTSNSSHLKLHINRRHTQNEIFMCYKCNYTATVKGTLQCHINVKHNPENLIPCAMCSFETVHQYNMKQHVISKHDPEKMLKCTMCSYKTANSSHLKRHINSCHTYNEIFYCANCSYKTTAKDNLQCHINMKHFRENLIPCAMCSYAAPTESRLMDHIQVKHGENKKTISSGKKRKRHSSEHSDTDEEITDMTHEIKCPPSPVPSLHLDADNESIIYNEGISIKSENDGHFNYSENDTSFNNVGLINIKSEDATHSNYGAPNGIIYNDGLKGEESKNNKNSYDENNVPKEFQCFVTLVKLRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -