Basic Information

Insect: Cartodere bifasciata
Gene Symbol: Clamp
Assembly: GCA_963920755.1
Location: OY987199.1:2247013-2252186[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.6e-06 0.00021 21.7 4.0 1 23 103 125 103 125 0.99

2 8 2.1e-05 0.00097 19.6 0.5 1 23 162 185 162 185 0.93

3 8 0.00013 0.006 17.1 3.0 1 23 323 345 323 345 0.97

4 8 7.6e-06 0.00035 21.0 0.2 1 23 351 373 351 373 0.98

5 8 2.2e-06 0.0001 22.7 1.5 1 23 379 401 379 401 0.99

6 8 8.4e-07 3.9e-05 24.0 1.2 1 23 407 429 407 429 0.98

7 8 2.2e-05 0.00099 19.6 3.3 1 23 435 457 435 457 0.98

8 8 2.5e-05 0.0012 19.4 0.6 1 23 463 485 463 485 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.6e-06	0.00021	21.7	4.0	1	23	103	125	103	125	0.99
2	8	2.1e-05	0.00097	19.6	0.5	1	23	162	185	162	185	0.93
3	8	0.00013	0.006	17.1	3.0	1	23	323	345	323	345	0.97
4	8	7.6e-06	0.00035	21.0	0.2	1	23	351	373	351	373	0.98
5	8	2.2e-06	0.0001	22.7	1.5	1	23	379	401	379	401	0.99
6	8	8.4e-07	3.9e-05	24.0	1.2	1	23	407	429	407	429	0.98
7	8	2.2e-05	0.00099	19.6	3.3	1	23	435	457	435	457	0.98
8	8	2.5e-05	0.0012	19.4	0.6	1	23	463	485	463	485	0.98

Sequence Information

Coding Sequence: ATGTTTGACCCCAACACCATAACAACGCAGGGCAACCAAATACAGTACCAGCCAGCCCCACAGCAAGCGAAAGACACCAAAATCGAGGATGGCAGCCAAAAAGAAAGCTTCCCAACTTCGTTTTGCTACGCTAACGTTAATATGATAACGCATAAAATAGCCCCGGCCACTTCGCAACCCCATAACTCAACAGTTAACATGTCCCAGCTAACAGATGACAAGTGCTACATTACTCAGCCCTTCAGTTATAACTACGCGCTCGTTAATCAGATGTCGCTGACGCAAAACGCAATTTCGAACATAACCTTTAAATGCGAAATTTGTGGGTTAATGTTTGCGCAGTTGCATCATTTAAATCAGCACAAGAGAACACATCAAGGGCAAGAAGGTCAAGgGCAAAATCAACCCCAACAAATAACCCTACAAGTTCAGCAACCCCAACAACCTACTCAAATTCAAATAGTATCAGCTGATCGCATTCGTTTTTCCTGTGAAGAGTGTGGCTTAACTTTTGCTACGCAAAATGAACtgaaaaatcacaaaattcaAACACATCAGtcGCAACAAGTACAGGTCCAAACCCAACCAGCACAAAATAcgctaaaaatcaaaaattgtgaAACTTGCGGCGCTCCTTTACCACAagacaataacaaaaaaagggctgttttaaaagtaaaatgcGAAACTTGTCTTTCGGCCGAGGCTATCCAACCCCAAATTTTCGTTGTGGCTACTACCCCTGATacaactaatattaaatttgAAGAAACTTCCACTGGTACTCAAACTTCTGGCAATACTGttgtGGGGACTCAAAATACAATACCGATTGGGGTACCTAAAAATAATCACCCTGTAAAAAGACGAGGGGTGGCCAGCGTAACGAAATGTACAAAATGTAACGGAAGtggaattatttttattggtggGGCCAAAAATCAACAAGCTAACGTAGATAAGCCGTTCCACTGCAATATTTGTAATGGCTCATTCAGTCGTTACTCATCTCTATGGTCACACAAACGCTTACACACCGGCGAGAAAAACTTCAAATGCAACATCTGCGGTCTAGCATTCGCTAAAGCagcgtatctcaaaaaccactCGCGTATCCACACAGGCGAGAAACCATATCGCTGCAACGTATGCGGTATGCAATTCTCGCAAAGCCCTCATCTCAAGAACCATGAACGTATCCATTCAGGCGAACGCCCATACGTATGCGAGGTCTGTGAAAAGTCATTTGCGCGCCACTCAACCTTATGGAATCACAGACGGATACATACCGGGGAGAAACCGTACAGGTGCGACATCTGTGGGTCGTGTTTCAACCAAGCGACGCATCTTAAGAACCATGCCAAGGTACACTCAGGGGAGAAGCCTTTTAGGTGTGATATATGTTCGGTTGGGTTCTCGGATAGGTTTGCTCTTAAACGGCATAGGAATATTCATGAGAAGTACGGGCGGACTAAACCAATGGAACCTGCTGCGACGGTTAATAATACAGAGAATGATGCGCTGATTTCTACGACGGAAGCAGGTGCTGATATGGAACAGCATGAAgaggaagaagaagaagagatGCTTGAGACGAAATACGTTGCTAAGTTTGAAAATGTTGAGTTAGAAGAAGAGATAACTGATATTTCTGAGTTACAAGTTCAGTTGTcttaa
Protein Sequence: MFDPNTITTQGNQIQYQPAPQQAKDTKIEDGSQKESFPTSFCYANVNMITHKIAPATSQPHNSTVNMSQLTDDKCYITQPFSYNYALVNQMSLTQNAISNITFKCEICGLMFAQLHHLNQHKRTHQGQEGQGQNQPQQITLQVQQPQQPTQIQIVSADRIRFSCEECGLTFATQNELKNHKIQTHQSQQVQVQTQPAQNTLKIKNCETCGAPLPQDNNKKRAVLKVKCETCLSAEAIQPQIFVVATTPDTTNIKFEETSTGTQTSGNTVVGTQNTIPIGVPKNNHPVKRRGVASVTKCTKCNGSGIIFIGGAKNQQANVDKPFHCNICNGSFSRYSSLWSHKRLHTGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYVCEVCEKSFARHSTLWNHRRIHTGEKPYRCDICGSCFNQATHLKNHAKVHSGEKPFRCDICSVGFSDRFALKRHRNIHEKYGRTKPMEPAATVNNTENDALISTTEAGADMEQHEEEEEEEMLETKYVAKFENVELEEEITDISELQVQLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310805;
90% Identity: -
80% Identity: -