Cbif011936.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Cartodere bifasciata
Gene Symbol
-
Assembly
GCA_963920755.1
Location
OY987198.1:1632451-1638228[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 39 3.3 1.5e+02 3.3 2.5 2 23 3 25 2 25 0.93
2 39 0.00095 0.044 14.4 1.6 1 23 137 160 137 160 0.97
3 39 1.4 65 4.4 7.7 1 23 167 190 167 190 0.97
4 39 0.026 1.2 9.9 0.4 1 23 195 218 195 218 0.95
5 39 0.044 2.1 9.2 4.8 1 23 225 248 225 248 0.96
6 39 0.0013 0.062 13.9 3.0 1 23 317 340 317 340 0.96
7 39 0.011 0.51 11.1 6.1 1 23 375 398 375 398 0.98
8 39 1.5 69 4.4 3.4 1 23 403 426 403 426 0.93
9 39 0.0079 0.36 11.5 4.3 1 23 433 456 433 456 0.97
10 39 0.0058 0.27 11.9 5.0 2 23 462 484 462 484 0.96
11 39 0.0021 0.098 13.3 2.8 3 23 493 514 492 514 0.96
12 39 1.8 85 4.1 1.4 1 23 519 542 519 542 0.93
13 39 9.8e-05 0.0045 17.5 4.1 1 23 549 572 549 572 0.97
14 39 0.014 0.64 10.7 3.2 1 23 582 605 582 605 0.95
15 39 0.55 26 5.7 3.1 1 23 612 635 612 635 0.96
16 39 0.00096 0.045 14.4 3.6 1 23 640 663 640 663 0.95
17 39 0.18 8.4 7.2 0.9 1 23 670 693 670 693 0.96
18 39 0.062 2.9 8.7 3.0 3 23 701 722 700 722 0.96
19 39 0.028 1.3 9.8 1.2 2 23 877 899 877 899 0.96
20 39 1 48 4.8 5.1 1 23 906 929 906 929 0.97
21 39 0.002 0.09 13.4 3.6 1 23 934 957 934 957 0.95
22 39 2.2 1e+02 3.8 7.6 1 23 964 987 964 987 0.97
23 39 0.028 1.3 9.8 3.6 1 23 1061 1084 1061 1084 0.96
24 39 0.014 0.64 10.8 1.9 1 23 1088 1111 1088 1111 0.95
25 39 4 1.8e+02 3.0 5.7 1 23 1118 1141 1118 1141 0.97
26 39 0.0081 0.37 11.5 1.2 1 23 1146 1169 1146 1169 0.94
27 39 0.0013 0.062 13.9 3.0 1 23 1270 1293 1270 1293 0.96
28 39 0.82 38 5.2 5.9 1 23 1298 1321 1298 1321 0.95
29 39 4.2 1.9e+02 2.9 8.2 1 23 1328 1351 1328 1351 0.98
30 39 0.18 8.5 7.2 2.4 1 23 1356 1379 1356 1379 0.94
31 39 0.0031 0.14 12.8 3.6 1 23 1386 1409 1386 1409 0.98
32 39 0.031 1.4 9.7 1.8 2 23 1415 1437 1415 1437 0.94
33 39 0.1 4.7 8.0 3.6 2 23 1445 1467 1445 1467 0.97
34 39 0.37 17 6.3 1.5 1 23 1472 1495 1472 1495 0.94
35 39 0.00018 0.0081 16.7 5.3 1 23 1502 1525 1502 1525 0.97
36 39 0.0032 0.15 12.7 3.8 1 23 1535 1558 1535 1558 0.96
37 39 0.018 0.83 10.4 3.3 1 23 1565 1588 1565 1588 0.97
38 39 0.00064 0.029 15.0 1.3 1 23 1593 1616 1593 1616 0.97
39 39 0.0022 0.1 13.3 2.8 1 23 1623 1646 1623 1646 0.98

Sequence Information

Coding Sequence
ATGTTAGAATGCGAGCACTGTGACTTTAAGAGTGTCTCCAGCAAACGTATGAAGACCCATGTTACCTCTACACATACCCTACAAAACAAGCAAGTACCCAGCACAGATATCTTACCTTCTACTTCACATGGATCTATTACCACAAGCTACAACATTCATGAATGTAATAACACCAACAATGCTATGACTAACAACTATGAAACTACAGTTAAGATAGAGAAAATGGACGACGACATCGAGGAGCAACTGCTTCAAAACGAAGACAATGATTTAGATAAGGAGTTTTTGGTGAAGAGTGAGATAATTTATATTAACGAAGAAGTCATGGACATGGATGACCAAAGTGACTACAGTAGTCACTCTGAATCAACAAATGATCACAATCATATAAAACTTAAAGGTGGAATACATACTTGTGATGAATGTGACTATAAAAGTAGTAAAAAGACTGCTTTGATTTCACATATGAATATGATGCATAAAAATGGCAGTGCCACATATTCTTGTAAACACTGTGACTACAGTACGCACTCTAATTATCAGCATGAAGATCACATGcgcataaaacataaaaaaataaaatatgcttGTGGAAAATGTGACTATAAAACTTATACTAAGTGGAATATAAACCAACACATAGATAGAGTACATAATGATGGTAGTGTCACATATCCATGTGACCACTGTGACTTTAGTACTCACTCTAAGTCTTATTACAAAGCGCATGTATTGCGTAAACATAAAACAGTTAAAAACGACGCCAAGGAGTCACTATTTCCAATTGAAACCGTATACATAAACGAGAAAGTTAACGTTAAAACTGAACAAATTGATATTAAAGAAGAAGTCACACCAATGGACAACGATGAAGCTTGTGACTCTGATTATAAGAGCGTTAATAACATAAATCAGGCGGATAAAAATTACATCGTGGGTAGTGTAACACACTCGTGTGACTACTGTGACTCtacctttaaattaaaacatgctCTAAACACACATATACGTGAAGCACATAAAGATTTAATACATTGTTGTGATAAGTGTGACTACCACAATGCTAATAAGCATAATCTTAATCTACACATGGACAGAAAACATAACGATGGTACTGTCACATACTCGTGTCAACACTGTGACTACACAAGTCACTCTAAATACACGTTAAAAGAACACTTGCGTGTAAAACATAAAGGAGTTATACACGCTTGTGATAAATGTGACTTTAAAAGTGGTGATAAACGTCATCTAGCTGTTCACAAGGATAGAAAACATAATGATGGAAGCGTCACATATTCTTGTGACCACTGTGACTACCGCAACAAATCTGAACACAATCTTAAAGCACATATGCGAGCAAAACATGAAGAAGTTCTAAATACTTGTGAGCACTGTGACTACAAGTGTAACACCAAAAATGACTTAAATAAACATGTAGAAACAATGCATAATGATGGTAGTATCACACGCTCTTGTGACCGTTGTGACTACACCACACATTCTAAGTATGAACTCAAAAAACACATGCTCACGATACATAACGCAGTAATACACCCTTGTAATAAATGCGAATTTAAAACGTCTAATAAAGGAATTCTAGCCAAACACGTCGATAAAACGCACAATGACGGCAACACCATATATTCTTGTGAACAATGTGACCACGTGTTTATAACTAAGCACAGTTTAAGCAATCACATGCGCGAAAAACACAACATAACTCAATACGAAAGTCACATACATTCCTGTGACAAATGTGACTACAAGACCGGTAAGAAAAGCAACCTGTCTCAACACATAGACAGAAAACATAACGATGGTACTATTACATATTGTTGTGACCAGTGTGACTACAGAACTCAGTATTACTTGCAACTCAGAGAACACATACGTGCAAAACATACAGGCACAAAAcattgttgtgacctttgtgACTACACAAGTGCTAGAAAGAGTAACTTGGCGCAGCATATGGATACTAAACATAATGATGGTAGTGTTACATATTCTTGTGATCTCTGTGACTACCGTAACATATCTCAGCATAATGTAAATGTACACATAAGGGCAAAACATAGAGGTAAAGTCATGAATGCTTGTAGTCACTGTGACTACAAGTGCGGCAATAAGAATACCCTGGTTATACACATGGATAGAATGCATAATGATGGTAGTGTGACTTATTCTTGTGAACACTGTGACTATACCAATGTATCTAAAGGCAGACAAATCGTAGAAAGAAAACCCTGTGACTCCAGCAAAAGTATGGAGACCCATGTTACCTCTACACATACCCTACAAAACAAGCAAGTACCCAGCACAGATATCTTACCTTCTACTTCACATGGATCTATTACCACAAGCTACAACATTCATGAATGTAATAACACCAACAATGCTATGACTAACAACTATGAAACTACAGTTAAGATAGAGAAAATAGACGACGACATCGCGGAGCAACTTCAAAACGAAGACAAAGATTCAGATAAGGAGTTTTTGGTTAAGAATGAAAGGATTGATATTAAGGAAGAAGTCATGGACATGGATGACCAAAGTGACTACAGTAGTCACTCAGAATCAACAAATGATCACAATAGTACAAAACATAAAGGTGTAATACGTGTTTGTGATAAATGTGACTATAAAACTAATCAAAAAGGTTCTTTTGATCAACACATGGAAAGAAAGCATAATGATGGTAGTGTCACATACTCATGTGAACAATGTGACTACAGTACGCACTCTAAATATCAGCATCAAGATCACATAcgcataaaacataaaaattcaaaacatgcTTGTAACAAATGCAATTATAAAAGTAGTACTAAGTGGAATTTAACTCAACACATGGACAGAAAACATAATGATGGTAGTGTCACATATTCGTGTGACCACTGTGACTTCAGTTGTCACTCTGAGTTATACCTTAGAGCGCACAATAGGcgtaaacataaaaaacttaaaaaagacatCGAAAAGCACTTATTTCAAACTGAAACCATATACCTTCGCGAGCAACTTGCAGTTAAAAATGAAGAcatcaaaattaagaaaaaagtcaGACAAATGGATGAGGATGAAGCTAGTGATACATCTGATTGTGAGACTAGcaacaaaataaacttaaataaacATACGAATGACGAAAAACACAATTCTGACAGTGTCACATATTCCTGTGACCACTGTGACTACACCACCCATTCTAAAGTTCAGTTTGAGGAACATATTAGTGTAAAACACGACAACGTACATTCTTGTGATAAATGTGACTATAAAAGTCGTACAAATGTGCAACTACTTATACACATAGACAGAAAACACAATGATTGTAGTGTCACATATTCTTGTGAACAATGTGACTACAGTACGCACTCTAAATTTCAACACAAAGATCACATACGCATAAAACATAGAGAAGTAAAACATGCTTGTGATAAATGTGACTACAAAAGTGGTACTAAGTGGAACCTAACTCAACACATAGATAGAATGCATAATGATGCAGAAGTCACATATTCTTGTGACCAGTGTGACTTTAGTAGTCACTCTAAGTCACATCATAAAGCGCATGTATTGCGTAAACACAAAACAGTTGAAAACAACGCCGAGGAGTCACTATTTCCAACTGAAACCGTATACATAAACGAGAAATTTAACGTTAAAACTGAACAAATTGATATTAAAGAAGAAGTCACACCAATGGACAACGACAACGATGAAGCTTGTGACTCTGATTATAACAGTGTTAATAACATAAATCAGGCGGATAAAAATCACATCGAGGGTACTGTCACACACTCATGTGACTACTGTGACtctacttttaaattaaaacatgctCTAAACACACATATACGTGAAGCACACAATGATTTAATACATTGTTGCGATAAATGTGACTACAAAAATGCTAATAAGCATAACCTTGCAGCGCACATGGACAGAAAACATAACGATGGTAGTGTAACGTATTCGTGTCATCACTGTGACTACATCAATCACTCTAGCTTCTACTTAAAAGAACACATACGCAAAAAACACAAAGGAGTCACACATGCTTGTGATAAATGTGATTTTAAAACCGATGACAAACGTCTCCTAACATATCACATAGACAAAAAGCATAATGATGCCAATGTCAAATATACGTGTGACTACTGTAACTACCGCAATATTTCCAAGCACAATCTTAGAGAACATATGCGAGTTAAACATAAAGACGTTATGAATACTTGTGAACACTGTGACTACAAGAGTGACAACAAAAATGACTTAAATCAACATGTAGACAGAATGCATAATGATGTTGGTGTCACACGCACATGTGATCATTGTGACTACACCACAGATTCTAAGTTTGAAATCAAAAAACACACGCTTACTAAACATAATGTAGTAATACACCCTTGTGGCAAATGTGAGTTTAAAAGCACTAATAAAATTACTCTAGCCAAACACGTCGATAAAACGCACAATGATCGCAATACCATACATTCTTGTAAAGAATGTGACCACGTTTTTATAACTAAGCACAGTTTAAGTGATCACATGCGCATAAGTCACAATATAACTCAATATACAAACCTCATACATTCTTGTGACAAATGCGACTACAAAACCGGAAAGAAAAGCAACCTGACACAACACATGGACAGAAAACACAACGATGGTACTATCACATATTGTTGTGACCAGTGTGACTACAATTCCAAGTTTTACTCGCTGCTCAGAGAACACATTCGTGTGAAACATAAAGGCTTAATACATTCTTGTGACCAATGTGACTACACGAGTGCTAGAAAGACTACCCTGATTCAACACATGGAAACTATTCATAATGATGGTAATGTCACATATTCTTGTGATCACTGTGACTACAGTAACGCATCCAAGTACACTCTTAAGGCTCACATACGACGTAAACATAAAGGGTAA
Protein Sequence
MLECEHCDFKSVSSKRMKTHVTSTHTLQNKQVPSTDILPSTSHGSITTSYNIHECNNTNNAMTNNYETTVKIEKMDDDIEEQLLQNEDNDLDKEFLVKSEIIYINEEVMDMDDQSDYSSHSESTNDHNHIKLKGGIHTCDECDYKSSKKTALISHMNMMHKNGSATYSCKHCDYSTHSNYQHEDHMRIKHKKIKYACGKCDYKTYTKWNINQHIDRVHNDGSVTYPCDHCDFSTHSKSYYKAHVLRKHKTVKNDAKESLFPIETVYINEKVNVKTEQIDIKEEVTPMDNDEACDSDYKSVNNINQADKNYIVGSVTHSCDYCDSTFKLKHALNTHIREAHKDLIHCCDKCDYHNANKHNLNLHMDRKHNDGTVTYSCQHCDYTSHSKYTLKEHLRVKHKGVIHACDKCDFKSGDKRHLAVHKDRKHNDGSVTYSCDHCDYRNKSEHNLKAHMRAKHEEVLNTCEHCDYKCNTKNDLNKHVETMHNDGSITRSCDRCDYTTHSKYELKKHMLTIHNAVIHPCNKCEFKTSNKGILAKHVDKTHNDGNTIYSCEQCDHVFITKHSLSNHMREKHNITQYESHIHSCDKCDYKTGKKSNLSQHIDRKHNDGTITYCCDQCDYRTQYYLQLREHIRAKHTGTKHCCDLCDYTSARKSNLAQHMDTKHNDGSVTYSCDLCDYRNISQHNVNVHIRAKHRGKVMNACSHCDYKCGNKNTLVIHMDRMHNDGSVTYSCEHCDYTNVSKGRQIVERKPCDSSKSMETHVTSTHTLQNKQVPSTDILPSTSHGSITTSYNIHECNNTNNAMTNNYETTVKIEKIDDDIAEQLQNEDKDSDKEFLVKNERIDIKEEVMDMDDQSDYSSHSESTNDHNSTKHKGVIRVCDKCDYKTNQKGSFDQHMERKHNDGSVTYSCEQCDYSTHSKYQHQDHIRIKHKNSKHACNKCNYKSSTKWNLTQHMDRKHNDGSVTYSCDHCDFSCHSELYLRAHNRRKHKKLKKDIEKHLFQTETIYLREQLAVKNEDIKIKKKVRQMDEDEASDTSDCETSNKINLNKHTNDEKHNSDSVTYSCDHCDYTTHSKVQFEEHISVKHDNVHSCDKCDYKSRTNVQLLIHIDRKHNDCSVTYSCEQCDYSTHSKFQHKDHIRIKHREVKHACDKCDYKSGTKWNLTQHIDRMHNDAEVTYSCDQCDFSSHSKSHHKAHVLRKHKTVENNAEESLFPTETVYINEKFNVKTEQIDIKEEVTPMDNDNDEACDSDYNSVNNINQADKNHIEGTVTHSCDYCDSTFKLKHALNTHIREAHNDLIHCCDKCDYKNANKHNLAAHMDRKHNDGSVTYSCHHCDYINHSSFYLKEHIRKKHKGVTHACDKCDFKTDDKRLLTYHIDKKHNDANVKYTCDYCNYRNISKHNLREHMRVKHKDVMNTCEHCDYKSDNKNDLNQHVDRMHNDVGVTRTCDHCDYTTDSKFEIKKHTLTKHNVVIHPCGKCEFKSTNKITLAKHVDKTHNDRNTIHSCKECDHVFITKHSLSDHMRISHNITQYTNLIHSCDKCDYKTGKKSNLTQHMDRKHNDGTITYCCDQCDYNSKFYSLLREHIRVKHKGLIHSCDQCDYTSARKTTLIQHMETIHNDGNVTYSCDHCDYSNASKYTLKAHIRRKHKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-