Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987196.1:14920934-14923149[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.98 45 4.9 2.0 2 19 243 260 242 266 0.93

2 11 0.0065 0.3 11.8 0.8 3 23 345 365 344 365 0.98

3 11 2.9e-06 0.00013 22.3 1.0 1 23 371 393 371 393 0.98

4 11 1e-05 0.00048 20.6 1.0 1 23 398 421 398 421 0.97

5 11 0.00062 0.029 15.0 0.4 1 23 427 449 427 449 0.95

6 11 0.022 1 10.1 0.6 3 23 466 487 464 487 0.95

7 11 0.00013 0.0061 17.1 0.6 1 23 494 516 494 516 0.97

8 11 3.5e-06 0.00016 22.0 1.0 1 23 522 544 522 544 0.98

9 11 1.8e-07 8.1e-06 26.2 2.3 1 23 550 573 550 573 0.97

10 11 2.3e-05 0.0011 19.5 2.0 1 23 579 601 579 601 0.99

11 11 0.00011 0.0049 17.4 2.1 1 23 608 630 608 630 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.98	45	4.9	2.0	2	19	243	260	242	266	0.93
2	11	0.0065	0.3	11.8	0.8	3	23	345	365	344	365	0.98
3	11	2.9e-06	0.00013	22.3	1.0	1	23	371	393	371	393	0.98
4	11	1e-05	0.00048	20.6	1.0	1	23	398	421	398	421	0.97
5	11	0.00062	0.029	15.0	0.4	1	23	427	449	427	449	0.95
6	11	0.022	1	10.1	0.6	3	23	466	487	464	487	0.95
7	11	0.00013	0.0061	17.1	0.6	1	23	494	516	494	516	0.97
8	11	3.5e-06	0.00016	22.0	1.0	1	23	522	544	522	544	0.98
9	11	1.8e-07	8.1e-06	26.2	2.3	1	23	550	573	550	573	0.97
10	11	2.3e-05	0.0011	19.5	2.0	1	23	579	601	579	601	0.99
11	11	0.00011	0.0049	17.4	2.1	1	23	608	630	608	630	0.97

Sequence Information

Coding Sequence: ATGGTGCCTCCAGTTATTATCCAAGATTTTGCCCAAATATGCCGGTGTTGCATGGAAATTGGTTCTTACGATATGTTGAAAACTTATTTCGAGAACGAATTGTTGTCCAACATTCTCAAACTCTGCACATCCATTCAGATACCAACGAACGACAAtcttccaaaaaatatttgccaaAACTGTTTGCAACAGTTGTTATCGGCATACATGTTTCGCCAAAAATCAGTTAAAGTTCAAGATGCAATAGTTGAAATTTCCAAAGTTCTTGATTGTAATTCAAAGACTCGGAAGAGTCTGATTTTCAACCACCCAACAAACAATCCTAATTCGGAAGCAGACTCGCTTGAATTAGAACCTGTAAACATTGTACAGGAAGAACCGGTAAAGAAAAACGATTGTTTAAAACTGGAGCTAGAGCCAGAAGATGACGATTTGAAATTGTCTTTGCAAACGGAgcagtttttaaagaaaacctGGATGAATAACGATTTGAGAATGAGCTGTGAAAGTTTGGGAAGAATAGATGAGAGTAGCATTTCCATATTAGgtgCCGGCGAGCAAATCATGCTTCGGCCCTGCCATTCGGGCGAAAAGTCCAACATAATAGCGAAAGCCCTAGAAAATGATTCTATTGACATCGAAGAAGACAATCAATTATTTCTACAAAACGAACTTATTTTACAACAACCCCATCTAAATGAAATAGAAAAACATCAGCCCAATAAGTCCTGCAGTACatgttttgaaatttttgatagcTACTCGTTATTGATTCAACATTGTATGCAAACGAAACATCCTCGTCCCAGTATTTATAAATGCCAtcactgttttaaaaaaatggaatgCAAGAGCGAATTTTTGGCTCATTTGAAAAATCACCTCAAAATAAATATCAAAGGAAAAAACGAGAACCGCTACATTTACAatggaaaaaataatatttttacatgttTAATCTGCAACGACACGGTTGatactattttaaaactaagaaatcatttcaaagaaaaaggagACACTCATTTACTTTGCTCAatttgcaagaaaaagttTCCTACTTTGGCTAAAGTGAGGCTTCATGAAAGAAATCATTTCAAAGAGAAACCGTTTTCTTGCGGTGAATGTGGCTTGAGATTTACAATGCGAAGCAATTTGGAAAGGCACAAGCGGCTACATGGTGGAAAAACGTTTAACTGCGACATTTGCCAAAAagGATTTACCCAAAAAATGGCCCTAATGTATCATTTACGGACAACTCACCCCCTGGAAACCAACTTCTTATGCTACACTTGTGGCAAAATCTTCGCAACGGACATACTGCTTAAAAAGCATCTTATAAAGCACAATCTTAACGACTGCCTTAACAAGAACTTTCCTACAGTTCCCATCGATTGTGATATGTGTGGAAAAACTCTCAGTTGCAAGGCTACACTTTATGCCCACATAAAAAACGTCCACGAAAAACAGGGAGGGAAATTTAACTGCGTCGTGTGTGGAAAATCCCTCAAAACCAAGTCTAGTCTTGATCTACATTTGAATTACCACACGGGAAACTGCCCGTACAAGTGCTTGACTTGCGGAAAAGCTTTCACGAATCCGACGACTTTAAAAAGCCATTCGCTAACTCACTCGGACGAACGACCCTATGCGTGCAAAATCTGCAATAAGTCGTTCAAACAAAAACCTCATTTAAACACTCATATGCTAACTATTCATATCCGTTTGAAGCCTTTTAGATGTACTTTTTGTAGTAAAACGTTTGCTTTGAATGGGAATTTGTCGCAACATTTGAAAACTCACACGGGTTGTGAGTCACCATTTATTTGCGAGATTTGCCACAAAGGCTTTTATTTTGCTAGTCGATTGCGCAAGCATGAACGAATTCATTTCAAAGATTCTATATAA
Protein Sequence: MVPPVIIQDFAQICRCCMEIGSYDMLKTYFENELLSNILKLCTSIQIPTNDNLPKNICQNCLQQLLSAYMFRQKSVKVQDAIVEISKVLDCNSKTRKSLIFNHPTNNPNSEADSLELEPVNIVQEEPVKKNDCLKLELEPEDDDLKLSLQTEQFLKKTWMNNDLRMSCESLGRIDESSISILGAGEQIMLRPCHSGEKSNIIAKALENDSIDIEEDNQLFLQNELILQQPHLNEIEKHQPNKSCSTCFEIFDSYSLLIQHCMQTKHPRPSIYKCHHCFKKMECKSEFLAHLKNHLKINIKGKNENRYIYNGKNNIFTCLICNDTVDTILKLRNHFKEKGDTHLLCSICKKKFPTLAKVRLHERNHFKEKPFSCGECGLRFTMRSNLERHKRLHGGKTFNCDICQKGFTQKMALMYHLRTTHPLETNFLCYTCGKIFATDILLKKHLIKHNLNDCLNKNFPTVPIDCDMCGKTLSCKATLYAHIKNVHEKQGGKFNCVVCGKSLKTKSSLDLHLNYHTGNCPYKCLTCGKAFTNPTTLKSHSLTHSDERPYACKICNKSFKQKPHLNTHMLTIHIRLKPFRCTFCSKTFALNGNLSQHLKTHTGCESPFICEICHKGFYFASRLRKHERIHFKDSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -