Cbif015087.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987199.1:10151192-10155448[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.24 11 6.9 0.4 1 22 155 177 155 177 0.88 2 14 0.0058 0.27 11.9 0.3 3 22 199 218 197 218 0.94 3 14 0.00018 0.0083 16.7 0.4 3 23 233 254 231 254 0.96 4 14 0.22 10 7.0 0.3 3 20 264 281 263 283 0.92 5 14 0.0021 0.097 13.3 0.5 2 23 294 316 293 316 0.94 6 14 0.028 1.3 9.8 0.2 1 23 390 413 390 413 0.95 7 14 0.14 6.3 7.6 2.5 1 23 424 447 424 447 0.97 8 14 1.4 65 4.4 0.1 2 23 467 489 466 489 0.90 9 14 0.0036 0.17 12.6 0.2 3 21 501 519 499 520 0.93 10 14 2.7e-05 0.0012 19.3 0.7 1 23 530 553 530 553 0.94 11 14 0.0006 0.028 15.0 3.4 3 23 560 580 559 581 0.95 12 14 8.3e-07 3.8e-05 24.0 0.9 2 21 592 611 591 612 0.94 13 14 1.9e-06 8.8e-05 22.9 1.3 1 23 629 651 629 651 0.98 14 14 3.9e-06 0.00018 21.9 0.9 1 23 657 680 657 680 0.97
Sequence Information
- Coding Sequence
- atgTTTTTAATTACTAATGTGTGTTGTGTTTGTCTGGAAACTGCTTGTAACACAGAATTAAACCAAAACGACGCTAATAAGAACCCAATTGCATCAAAACTACGACGTATTGTCCCAGAAGTGGAATGGAACgatgaattaaaaatatgcCTCCAGTGTCTGGAACTGGTCCTTAAATTCGCAGAATTCAAGAAATTGTGCATTGAATCGCATCTAAAGCTAAACCAAAAAGATGGCATCAAAATTGAAAATGGTGAAGAATATAGCTCATTGGAGCCAATAATAAGTATTAAAAGTGAAGTAAATGCATCAATAAACCAAGTTTCGGAGGCTAGTTCAAGTCCAGACGCGTTTTTTGACGAATTTTCGACACCCAAACGAAAAAAAACCTCCCACactaaaaatgttaagaaAGGCGAACATATAACACCCAAAATCGATGAAAAACGACCCAAAAAACGATACCCATGCACTGCCCCTTGTCGTCAAGTCTTCCAAACCGAAAACCAActcaaaaaacacaaaaaaacatgCCAGGGCATTTTAACGCCGCTAAAAACATACGTTTCAAATTTGGATCAAAGCAGCTATGGATGCAACAAGTGCGGGCGGAGATTCACGAGCGAACAAGTGCTTTCCGAGCACACCCGAATGTGCATTTGCGCGTCCATAAACAACCGTGAAGTTAGATCCAACTGCCCACTTTGCAAACGCGTTTTTGGGGActtaaattcattaaaaaaccaCATCTCTACCTcgcatttattaaatattgatgCTGTGAACATGTGTCAGGTGTGTTTTGCGCAATTTGACAGTGCGCATGAGTTAAATGCGCATGTGCATAGTCCCGAGGAAGTGGCTAAAGTTACGTTTTCTAAGTGCTCAACGTGTGAAAGTGTGTTTTCAACCAATGCGGAACTTAGTAGACATGTTTTTAGTGAACATAGTGTAATTTGGGAAGGGGAGGCCTCGTGTGAGGTTTGTTACGAGGTTTTTGACAGCGGGAAAGAGGCAATAAGTCACTACGCTTGTGCGCATGGTATTAGTTCGAATTTGTTGGTTAGGCCCTTTTTGTGCCCGCATTGCCCTGGGCGTTATTTTGGAATTGGAATAAAGGCGCATATAAGAAGTCATTTAGTGGATAAAACGCATTTGGAAGTTAAATACAGgtgCGAAGCATGCGTTGAAATCTTCAATTCTGCTCGACAGTTagaaattcattttaaaaacaatcacaacccagaaaaaaaagaaacggTTCACCCATTTACGTGTCGCCATTGCCCCACCAAAATTACCTCTTTACAAGGACTTTTTATCCACACtcaaaaacaacatttaataCCTGACAAAAGTGAAAAAATGCCTACCCAAAACTTAAATCAACCCCTAATAAGTTGTGAAACATGTTTGCAAGATTTCCGATCCCCAAAATACGTTTTAGACCACGCTGCATCAATTCATAATTTGGAAGTGTCTACCGTCACAACATACGGCTGTCCGCATTGTCCGAGGCGGTTCTATGATTTGAATACGTTCAACGAGCACATAGCCACTTACTTTAAACTAGAAGAAAAGCTACAATTCGTGTGTTCGACTTGCGGAAAAGCGTTTAATTCTAagcagtatttaaaaatacatgaaGAGAGccaacatttaaatatttctaatatttGCGACAGATGTGGAaagaaatttaagaaaaaacaagcTTTATCTAATCATAATCGTGTTCATCATCCAGATGGTTTGCCAGaaggaaaaattattaagtgTAGTCATTGTGATAAAACTTTTGCTGATAATAGTGATTTAACTAGGCATTTAAATCGAGTTAATGGAGATGCTAGAATCGTTTCAAACTATCAGAAAAAACGCAACTTTGTGTGTCATTTGTGTCCCAAGGCGTTTATTGACAATAGGTCTttacaaaaacatttaaattctcATTTGGGAGTAAAGCCTTATGCATGTCAAATGTGCCCGAAGAGCTTTAGCAACAAGGATTATGTTAAAACTCATATGTTAAAAGAGCATAACTTTAAAACTCCTTGA
- Protein Sequence
- MFLITNVCCVCLETACNTELNQNDANKNPIASKLRRIVPEVEWNDELKICLQCLELVLKFAEFKKLCIESHLKLNQKDGIKIENGEEYSSLEPIISIKSEVNASINQVSEASSSPDAFFDEFSTPKRKKTSHTKNVKKGEHITPKIDEKRPKKRYPCTAPCRQVFQTENQLKKHKKTCQGILTPLKTYVSNLDQSSYGCNKCGRRFTSEQVLSEHTRMCICASINNREVRSNCPLCKRVFGDLNSLKNHISTSHLLNIDAVNMCQVCFAQFDSAHELNAHVHSPEEVAKVTFSKCSTCESVFSTNAELSRHVFSEHSVIWEGEASCEVCYEVFDSGKEAISHYACAHGISSNLLVRPFLCPHCPGRYFGIGIKAHIRSHLVDKTHLEVKYRCEACVEIFNSARQLEIHFKNNHNPEKKETVHPFTCRHCPTKITSLQGLFIHTQKQHLIPDKSEKMPTQNLNQPLISCETCLQDFRSPKYVLDHAASIHNLEVSTVTTYGCPHCPRRFYDLNTFNEHIATYFKLEEKLQFVCSTCGKAFNSKQYLKIHEESQHLNISNICDRCGKKFKKKQALSNHNRVHHPDGLPEGKIIKCSHCDKTFADNSDLTRHLNRVNGDARIVSNYQKKRNFVCHLCPKAFIDNRSLQKHLNSHLGVKPYACQMCPKSFSNKDYVKTHMLKEHNFKTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -