Cbif015096.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987199.1:10210161-10215895[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00038 0.018 15.6 0.9 3 21 162 180 161 181 0.93 2 24 0.015 0.67 10.7 0.2 3 22 205 225 203 225 0.93 3 24 0.22 10 7.0 0.5 1 20 245 264 245 266 0.89 4 24 0.0012 0.055 14.1 3.8 2 23 281 303 280 303 0.93 5 24 0.63 29 5.5 0.1 3 21 312 330 311 331 0.92 6 24 4.4 2.1e+02 2.9 2.0 2 19 348 365 347 370 0.84 7 24 6.6 3.1e+02 2.3 0.0 2 23 379 401 379 401 0.90 8 24 1.7 77 4.2 2.4 1 21 412 431 412 432 0.89 9 24 5.6 2.6e+02 2.5 0.1 3 23 502 523 500 523 0.91 10 24 0.04 1.8 9.3 0.1 2 23 537 559 536 559 0.95 11 24 0.042 2 9.2 1.1 1 21 569 589 569 590 0.94 12 24 0.087 4 8.2 0.1 1 20 598 617 598 621 0.80 13 24 0.0023 0.11 13.2 1.8 1 21 626 646 626 649 0.94 14 24 0.0011 0.051 14.2 0.2 2 20 660 680 659 682 0.92 15 24 2.7e-05 0.0012 19.3 0.8 1 23 689 712 689 712 0.97 16 24 8.4e-06 0.00039 20.9 4.1 1 23 719 742 719 742 0.98 17 24 0.00026 0.012 16.2 3.1 1 23 759 781 759 781 0.95 18 24 0.0044 0.2 12.3 5.1 1 23 941 964 941 964 0.96 19 24 0.3 14 6.5 0.8 2 19 984 1001 983 1001 0.91 20 24 0.0019 0.09 13.4 0.3 2 23 1018 1040 1017 1040 0.97 21 24 1.1 51 4.8 0.1 3 21 1050 1068 1049 1069 0.92 22 24 1.1e-05 0.00052 20.5 0.5 2 23 1082 1104 1081 1104 0.96 23 24 0.67 31 5.4 0.2 2 20 1113 1131 1113 1132 0.86 24 24 0.0015 0.067 13.8 0.6 1 23 1179 1202 1179 1202 0.96
Sequence Information
- Coding Sequence
- ATGTCTAGCTCAAACACCAATTCCTATTGTTGTATTTGCCTAACACATCACTGGATAACagatttaagttttattgaacctcaaaaatcattttctgTTTTGTCTCAGTTGCAAAAAATCGTGCCAGAAGTCGTATGGAACGCGGATTTTAAGATTTGTATGCAGTGCATCGAACTTGTGGATAAATTTACGGAATTTAAGAAGTTGTGCGTTGAATCTAGTCTAAAACAGAAAAGTATTAAATCTGAAGGCAGTATTACGGATGATGACAAACAAGTGGACAAGATAGTTCCGCCAGAAGTTTTAATAAAGGAAGAACAAGCTCTTGACGACAAATTGACTTTAAGCTCAAAACTAGACAACAATGACGATGTTTCTGACTACGAAGCTGGCTCAAGTGAACAACTAGAGGTTGAAGACTCGGACTACGAACCCCCGAAGAAGGTAGCAAAGCGAAAACGTGAAAAAATCCTGTCAAACATATGCACCTCATGCGGTAAGgccttttccaaaaaaaccgaactaaaaaaacatgaaaaaaagACATGTTCTGCTGTTAAGCTCAAGAAAAAGAAGCTAGAAGCCGAGAAGAAGCTACAAGGCAGGATACATTGCAGCTTTAACTGCCCGCAAGTGTTCACAGATGCAGACGAGTATGAAGAACATCAAAAAACTTGTGAAGGACTCTTTAGCATTAACCGAAGACGTGTTCCGTACATCGACGAAAGCATACACGCGTGCCAAAAGTGCTCGCGACGTTTTACTAGTGAATTAGTGCTAACAACGCATGTAAATGAGTGCATCGGCACCTCAGGAGGTGATATAAGTGAGGTTAAGTGTAAATGTCCACTGTGTAAACGTGAATTCTCAACCAAAAACTCGCTTAACGCGCATTTTACCAAGCTACACCGCGACTTCGACATCCAAAACATGTGCCAAGTCTGCCTCAGCGTGTTCCCCACTGCGCAAGAGTTAACTGCGCATGTGCACACCCCTGAGGAAGTGGCTACAGCAACGCAAAGCCCCCAGCAGCAACAACAGCAATGCGACACATGCCACGAAGTGTTTGATAGCGTACTGGAGCTAGGAAAGCATTGCTTCACCGCGCATGACACAGTGTGGGTGAGTGACGCCACGTGTGAAGTGTGCTTGGAGGTGTTCCCCAGCGATGCGGACGCTGTTAACCACTACAAAGACGCGCATGGCATTGATGAGGCCACGTTTATACGACCGTTCTTCTGTTGGCACTGCCCGGCGCGCTTTAGCCATGCCACGTTTAAATCGCACATCAAATACAACTATCAGCGCAAGTTGGTAACGAAAAAGATTAATCTGAAGAAGCGCGCGAAGTTGGTGACGAAACGCAGTGGGAAAATTAAAGACGCGGTTGACGCGCGGTATAGATGTGACGACTGTTTGAAGATGTGCTTGTGCAAGTCTGAATTAGAGGCGCATTGCGCGAAAGAACACAAAGAAAAGTACAACGGGACTGTGCATTTGGCGTGTCGTCATTGCGCAGGCAAGGCATCATCAGCGAGCGCTTTGTATGCGCATGTGCGTGCGCGACACATGCCGGCAGTTGAGCTAAACGCTGATAAGCCGTGTTTGAGCTGCGAGGCTTGCGATGCAACGTTTACAACACCGGAAAGCGTGATAGATCACAGCAAGACGCAACACAACTTAGAAGGCAACACGGTTACACCTTACGCATGTCCGCACTGCCAATTCAGGTGCGTTACGCTAGCTACGTTCAATACGCACATCGCTACGTACTTTGAGGAGAAGCAGCGCTTCGTGTGTCCTACTTGTGGCGCTGAGTTTTCAACCAAACAAGCTGAGCAAGCACATGAGGACTCTGTCCATAAAAAGATAACGCATATGTGTGAGGCATGCGGACGAATTTTCCCCAAAAAAGGCAACCTGCGCGCGCACATAAAGTGTCGCCACCCTGAACTGGTTCCAGTTGAACAACTCCTAAAATGTAGCATTGGTCATTGTGATAAAAACTTCGTGTCAAAGGCTGATTTACAAATTCACCTCGATAGGGTTAATGGCGTTAAAAACTACGCATGTCACGCGTGCCCTATGACCTTTAGGCGCAAAGCAGAACTGAACGCACATATTAAGCGCACTCATTCCGGCGAGCGAGAACTCTTTAAGTGCGAGGAATGCCACCAAGAATTCAAAGACAAGTACTACCTCAAAGTTCACATGAAAAAGGAGCATAATATCGGTACCGTTAAGTGGATTCCGAGGTGTCAGCAGCCAAGAAAACATGCCTGTCATTTATGTCCGAAAGATTACCGCGACAAGAAGGAGCTACAGAGACATTTGGACTCACACGCTGGGATTAAGCGTTACGCATGTCAGTTTTGTAACTCAGCCTCGGACTGGAACACACAAATTTCACAAACGAATAATCGTGATAACATTCCTATTATATCCAAATTGCAGACTATTTGTTCTGAAGTGgaatggAAGCCTGAGTATAAAATATGCCTAAAATGTTTAGAAACAGTGGAAAAATTCACAGAATTTAGAAAGCTGTGCGTTGATTCgcatttaagaataaaaaatgcGGTGGAATGTAAtgaaaaatacattaaaactGAAGAACTGCAAATTATCACAGAAACTGGCTTTAAAAAGCACCAAACAGGTGTTAAAAACGAATTTTGTTGTGAAATAAACGAAGAAAACGTTAAAAAAGACACCTTAAGTGAAGATAATTCAAATCAAAGTGATACTTTTGCAATAAACGAAGACTTTTTATCCGAAAACGAGTCAAACGAAACATCCCATCGCCggtttaaaaaaagacatGTTTGCACAGGTTGTGGGCGTTCATTTTCTAAGGAAATATTATACCAAAAGCATAAACAAAAATGCCACAGACATAacttggaaattttaaaaacaagcatCGAAAAATCGGAAAAAAACTACATCGAGTGTAACAAGTGCAAGCAGCGTTTCACTAGCCACCAAGTTCTCTCAGCGCATTGTACCATTTGTAACGGCAACGCTGTAGGAATAAGTGAGGTTAGAACTAAGTGCCCTCTTTGTGATAGTGTCTTCAGAAACGTAAACGCGCTTAAAGTGCACTTTAAAACGATACATAACGTGAATTTGGATAATGTAAACATGTGTCAGGTGTGTTTTGCGCAGTTTAGCAACGCGCTGGACTTAAGTGCGCATGTGCACACGCCTGAGGAAGTAGCTGAGGCAACGCGACACATGTTAAGGTGTACAGAATGTGATGAGACGTTTACAAGCTCTGACGATCTCTCACAACACATCTACACGCAACACGACCTCATATGGGAGGGGGAAGCCTCCTGTGAGGTGTGCCACGAGGTATTCACCTCTGGTAAAGATGCTACAAGCCACTACGCATGCGCACATGGTATAAAAGAGGCGGCATTAGTGCGGCCTTACTTGTGCCCACATTGCCCGGGGAGGTATCGCGTCTCCACGATAAAACCTCATATTAAAGGACATTTTGTGGATAAACTCAGTCATTGTGAGGTTAAGTTTCGGTGTGATGAGTGTGGGGAGTTGTTTAGTAGTGAAAGACAGCTTGTgcttcattttaaaagtagacATAACCTAGAAAATCAAAGTAGTGATGTTGTTCGACCGTTTTTGTGCAGACATTGCGAATATAGAACTACCTGTTTGCTGTATTTGTATAGACATGTTAGGACACATCATTTGGGCACTGAAAATAAGGTAAGTTTTAGTTCATTTTCCAAAAGAAATGTACGAGAGTTGTCTATTATATTTTGcttatag
- Protein Sequence
- MSSSNTNSYCCICLTHHWITDLSFIEPQKSFSVLSQLQKIVPEVVWNADFKICMQCIELVDKFTEFKKLCVESSLKQKSIKSEGSITDDDKQVDKIVPPEVLIKEEQALDDKLTLSSKLDNNDDVSDYEAGSSEQLEVEDSDYEPPKKVAKRKREKILSNICTSCGKAFSKKTELKKHEKKTCSAVKLKKKKLEAEKKLQGRIHCSFNCPQVFTDADEYEEHQKTCEGLFSINRRRVPYIDESIHACQKCSRRFTSELVLTTHVNECIGTSGGDISEVKCKCPLCKREFSTKNSLNAHFTKLHRDFDIQNMCQVCLSVFPTAQELTAHVHTPEEVATATQSPQQQQQQCDTCHEVFDSVLELGKHCFTAHDTVWVSDATCEVCLEVFPSDADAVNHYKDAHGIDEATFIRPFFCWHCPARFSHATFKSHIKYNYQRKLVTKKINLKKRAKLVTKRSGKIKDAVDARYRCDDCLKMCLCKSELEAHCAKEHKEKYNGTVHLACRHCAGKASSASALYAHVRARHMPAVELNADKPCLSCEACDATFTTPESVIDHSKTQHNLEGNTVTPYACPHCQFRCVTLATFNTHIATYFEEKQRFVCPTCGAEFSTKQAEQAHEDSVHKKITHMCEACGRIFPKKGNLRAHIKCRHPELVPVEQLLKCSIGHCDKNFVSKADLQIHLDRVNGVKNYACHACPMTFRRKAELNAHIKRTHSGERELFKCEECHQEFKDKYYLKVHMKKEHNIGTVKWIPRCQQPRKHACHLCPKDYRDKKELQRHLDSHAGIKRYACQFCNSASDWNTQISQTNNRDNIPIISKLQTICSEVEWKPEYKICLKCLETVEKFTEFRKLCVDSHLRIKNAVECNEKYIKTEELQIITETGFKKHQTGVKNEFCCEINEENVKKDTLSEDNSNQSDTFAINEDFLSENESNETSHRRFKKRHVCTGCGRSFSKEILYQKHKQKCHRHNLEILKTSIEKSEKNYIECNKCKQRFTSHQVLSAHCTICNGNAVGISEVRTKCPLCDSVFRNVNALKVHFKTIHNVNLDNVNMCQVCFAQFSNALDLSAHVHTPEEVAEATRHMLRCTECDETFTSSDDLSQHIYTQHDLIWEGEASCEVCHEVFTSGKDATSHYACAHGIKEAALVRPYLCPHCPGRYRVSTIKPHIKGHFVDKLSHCEVKFRCDECGELFSSERQLVLHFKSRHNLENQSSDVVRPFLCRHCEYRTTCLLYLYRHVRTHHLGTENKVSFSSFSKRNVRELSIIFCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -