Cbif003098.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:2758287-2761989[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.091 4.2 8.2 0.2 2 19 61 78 60 80 0.95 2 20 0.28 13 6.7 1.5 2 16 163 177 162 181 0.85 3 20 0.37 17 6.3 0.0 3 23 227 247 226 247 0.92 4 20 8.1e-05 0.0038 17.8 1.4 1 23 252 275 252 275 0.96 5 20 0.32 15 6.5 1.7 2 23 283 304 282 304 0.94 6 20 0.00043 0.02 15.5 2.9 1 23 309 331 309 332 0.96 7 20 0.0016 0.073 13.7 0.5 1 22 338 359 338 359 0.94 8 20 4.1e-05 0.0019 18.7 5.9 1 23 366 388 366 388 0.97 9 20 0.21 9.8 7.0 2.3 1 23 394 416 394 416 0.95 10 20 0.54 25 5.7 0.3 2 23 421 443 421 443 0.83 11 20 0.074 3.4 8.5 0.2 2 19 490 507 489 509 0.94 12 20 6.1 2.8e+02 2.4 0.4 3 19 548 564 546 567 0.85 13 20 0.00049 0.023 15.3 0.2 2 23 591 612 590 612 0.96 14 20 0.00021 0.0098 16.5 1.5 1 23 617 640 617 640 0.97 15 20 0.19 8.6 7.2 1.0 2 23 648 669 647 669 0.96 16 20 3.5e-07 1.6e-05 25.2 0.8 1 23 674 697 674 697 0.98 17 20 0.0016 0.074 13.7 0.6 1 22 703 724 703 724 0.95 18 20 6e-07 2.8e-05 24.5 2.9 1 23 735 757 735 757 0.99 19 20 0.29 13 6.6 3.7 1 23 763 785 763 785 0.95 20 20 0.044 2 9.2 0.4 2 23 790 812 790 812 0.91
Sequence Information
- Coding Sequence
- ATGTATGTAATAgactatgcaaaaatatgtgtTGTAAAAACAGAACTACTCGACGCAACATCAAAACTAACCAAAGAAATTTTGCTTACAGCTATCGAGACTCACCTAGATATTAAACCAGAATCCCCAGAACTCCAACCAACAATCAAAAAAAGACGTTTCCAGTCCTCGAACTCAATGCGTTGCAAATCATGCAACGCAATGTTCCGAAACGAGATGAATTACACGGCACACTTTGACGAAACCAATAAATGCATGGACACCAAATCCAAAACCTACGCCAACAAACTTAACCGTCTACGATGGGCTAGATCAACCCCAAACGAGAAACATATCCTAAACGAAAAGACCAAGATTGCTAAAGCTAATTCTACTCGTCAGTTGAGTTGTGATAGTTGTCAGTTTGTGACTAATGATTATAATGTACATAAGCGACATGTTAAGGCGCATAAGACAGATAAAAAAACTGATACTCGAAAGGTTTTAAGTTGTGACAAGTGCCACAAGAGTTTTGTCTACGAAAGGCATTAcatatttcattttaatcCAGACGGAACGTGCAAGGAAGTCGGAACTGGTACAAAGGTCGTTGCGCCAACCAAAAGCGTTGAAACGACTGCGCCATGTCAAGAGATTAAAAAAAGGGCACATGACAACGCAGCGGATGGCTCTCGCATGTGCCCTATCTGCGGCTTTGTTTCCAAAAACGCAAGCATAGCAAGGAATCATTTAATAATACACCAGGAAAAGAAGTTCTCGTGTCACATATGCGGCTACCCGTTTCGGACCATGTGGAAACTAAACTTGCACATCAAGGAGCGCCATTTAAAACAGAACACCACCAAGACCTGCCCTGAGTGTAACAAAGAGATAAAAAAGTACTCCTTTAGTTATCATATGCGCTTCTACCACAAGGAGCACAAGTACACTTGTGAAAACTGCGCCCAAACATTCGTCAGTCCGAACAAACTAAAGGCGCACATACATCGGCATCACCTAAAAACCAAAACACATCCATGTACCCATTGCGACTTAGCGTTTTACACCGTCGCAGAACTGAACACCCACCTAAAGCGACAGAAAGGGATCAAGAATCATCATTGTCCGCATTGCGACAAGGCTTTCGCGGAGAAGGGACATATGGCTAAGCATATTCGGACGCATACTGGAGAGAAGCCGTACGCGTGTCAGTACTGCGATGAACGGAAAGGGACGCGGTATCATTTAAAGCAGCATTGGTTCGTCCATAAGGGGGAGGCTAAGTGTCATTTGTGTCCTAAAGGGTTTGTTGCTGATGAGGTGTTGAAGTATCATTTAAGTGACATTCATAAGAACTTTAAACTAAAGTCAGACATTTTGCTTGCAGCTAGTGAGCTACAGCATCTCTACATAAAACAAGAACCCGACCAAGAACCTCAACAAGCACCAACAAAAAGACCAAGACGTGGTGTTAAAAACGAACGTACAGTTTGCGAAAAATGCAAAATCATGTTCATGTCCAAAATGAATTATAACGCTCACTTCGAGGAAAATAAGTGCATGGACACCAAATCCAGAGAAtacatcaacaaaataaacCGACTACGTTGGGCTAAAGACAACCCGGATAAAAACCAAAGCGTCCGTAAGCGACGCATCTTTTGCGATAAATGCCAGAGAGGTTTCTTTTCTGGGGAGAAGTACTTTTGGCACTTTGACATGGACGGGACTTGTAAGGGCGCGACTGCGCCAGGTAAAAATATCGAAACACAGTCATCCGAGGGTGCAAAGATGTGCCCAACATGTGGACGCGTCTACAAGAACTCCAGTATACTAAGAGGACACATGTTGATCCACCAGGAAAAGAAGTTCCGTTGTCACATATGCGGATTCGCGTTTCGCGTAATAACAAAACTAAACGCGCACATCAAACAGCGGCATTTGAAAGTAGGTCTTACGAAGTACTGTACCGAATGTAAGAAAGAAGTCAACAAAACGTCGTGGAGCTACCACATGCGTTCCGTCCACCGCGAGTACAAATACAAGTGCAAATACTGCGACAGAACGTTCGTAAGTCCGATTCAACTTAAAGCGCATATCAATCGACAGCACTTAAAGACCAAGACGCATCCTTGTACTCATTGCGACAGAGCGTTCTACAGCTTGGTAGAACTCGGTACTCACTTACGGCGACAGAAGGACAAAGAAAAAGGAATAAAGAAATACGTCTGTACACATTGTACTAAAGCCTTTAGCGACAGAAGCACTCTAACAAAGCATGTAATGACTCACACCGGAGAAAAGCCGCATATATGTCAGTATTGTGGCGCTGGGAAGACGAGCAAGTATCATTTAAAGCAGCATTGGTACTCGCATAAGGGAGAGGCTAAGTGTCATTTGTGTCCCAAAGGGTTTATTACCGATGAGGTGTTGAGATATcatttaagtgatgttcataaGGTTAGAGATGTGGACAGTAGTGATGCTTAA
- Protein Sequence
- MYVIDYAKICVVKTELLDATSKLTKEILLTAIETHLDIKPESPELQPTIKKRRFQSSNSMRCKSCNAMFRNEMNYTAHFDETNKCMDTKSKTYANKLNRLRWARSTPNEKHILNEKTKIAKANSTRQLSCDSCQFVTNDYNVHKRHVKAHKTDKKTDTRKVLSCDKCHKSFVYERHYIFHFNPDGTCKEVGTGTKVVAPTKSVETTAPCQEIKKRAHDNAADGSRMCPICGFVSKNASIARNHLIIHQEKKFSCHICGYPFRTMWKLNLHIKERHLKQNTTKTCPECNKEIKKYSFSYHMRFYHKEHKYTCENCAQTFVSPNKLKAHIHRHHLKTKTHPCTHCDLAFYTVAELNTHLKRQKGIKNHHCPHCDKAFAEKGHMAKHIRTHTGEKPYACQYCDERKGTRYHLKQHWFVHKGEAKCHLCPKGFVADEVLKYHLSDIHKNFKLKSDILLAASELQHLYIKQEPDQEPQQAPTKRPRRGVKNERTVCEKCKIMFMSKMNYNAHFEENKCMDTKSREYINKINRLRWAKDNPDKNQSVRKRRIFCDKCQRGFFSGEKYFWHFDMDGTCKGATAPGKNIETQSSEGAKMCPTCGRVYKNSSILRGHMLIHQEKKFRCHICGFAFRVITKLNAHIKQRHLKVGLTKYCTECKKEVNKTSWSYHMRSVHREYKYKCKYCDRTFVSPIQLKAHINRQHLKTKTHPCTHCDRAFYSLVELGTHLRRQKDKEKGIKKYVCTHCTKAFSDRSTLTKHVMTHTGEKPHICQYCGAGKTSKYHLKQHWYSHKGEAKCHLCPKGFITDEVLRYHLSDVHKVRDVDSSDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -