Cbif011975.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Cartodere bifasciata
Gene Symbol
-
Assembly
GCA_963920755.1
Location
OY987198.1:2072123-2078674[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 48 0.37 17 6.3 4.4 1 23 32 55 32 55 0.95
2 48 0.72 33 5.4 0.5 2 23 62 84 61 84 0.91
3 48 0.22 10 6.9 2.9 1 23 121 144 121 144 0.96
4 48 0.59 27 5.6 0.4 1 23 147 170 147 170 0.97
5 48 0.069 3.2 8.6 0.2 1 23 175 198 175 198 0.91
6 48 0.034 1.6 9.5 0.0 3 23 201 222 200 222 0.92
7 48 2.3 1.1e+02 3.7 1.3 1 23 229 252 229 252 0.94
8 48 0.0034 0.16 12.6 1.7 2 23 254 276 253 276 0.93
9 48 0.00051 0.023 15.3 0.2 1 23 283 306 283 306 0.98
10 48 0.00032 0.015 15.9 0.2 2 23 336 358 335 358 0.94
11 48 1.8 85 4.1 2.7 1 23 365 388 365 388 0.94
12 48 0.0022 0.1 13.3 0.5 3 23 391 411 390 412 0.95
13 48 0.00021 0.0096 16.5 0.5 1 23 419 442 419 442 0.98
14 48 0.17 7.8 7.3 0.6 1 23 447 470 447 470 0.92
15 48 0.22 10 7.0 1.7 2 23 472 494 471 494 0.94
16 48 0.02 0.93 10.2 1.1 1 23 501 524 501 524 0.98
17 48 6.2 2.9e+02 2.4 1.1 2 23 526 548 525 548 0.86
18 48 0.0016 0.073 13.7 0.1 1 23 555 578 555 578 0.96
19 48 0.19 8.8 7.2 0.9 1 23 583 606 583 606 0.92
20 48 0.0024 0.11 13.2 0.4 3 23 609 630 608 630 0.96
21 48 3.8 1.7e+02 3.1 0.4 1 23 637 660 637 660 0.95
22 48 0.13 6 7.7 1.0 1 23 665 688 665 688 0.95
23 48 0.00021 0.0098 16.5 0.1 2 23 690 712 689 712 0.96
24 48 8.5 3.9e+02 2.0 0.7 2 23 720 742 719 742 0.87
25 48 0.011 0.49 11.1 0.2 2 23 744 766 743 766 0.92
26 48 1 46 4.9 3.0 1 23 773 796 773 796 0.96
27 48 0.27 13 6.7 0.7 1 23 801 824 801 824 0.92
28 48 0.0026 0.12 13.1 0.7 3 23 827 848 826 848 0.96
29 48 0.13 5.9 7.7 2.4 1 23 855 878 855 878 0.94
30 48 0.23 10 6.9 0.1 2 23 880 902 879 902 0.92
31 48 4.2 2e+02 2.9 1.5 1 23 937 961 937 961 0.84
32 48 2 93 3.9 1.0 2 20 963 981 962 981 0.94
33 48 1.2 54 4.7 1.6 2 23 991 1013 990 1013 0.95
34 48 0.072 3.3 8.5 1.2 2 23 1046 1067 1045 1067 0.95
35 48 5.7 2.6e+02 2.5 1.5 2 23 1126 1148 1125 1148 0.96
36 48 0.041 1.9 9.3 8.6 1 23 1214 1237 1214 1237 0.94
37 48 0.3 14 6.5 0.1 2 23 1241 1263 1240 1263 0.96
38 48 0.045 2.1 9.1 0.8 3 23 1268 1289 1267 1289 0.96
39 48 0.13 5.9 7.7 0.9 1 23 1346 1369 1346 1369 0.95
40 48 0.015 0.71 10.6 1.9 2 23 1373 1395 1372 1395 0.96
41 48 0.0039 0.18 12.5 0.6 1 23 1400 1423 1400 1423 0.94
42 48 0.029 1.3 9.8 1.2 2 23 1427 1449 1426 1449 0.96
43 48 1.8 83 4.1 0.7 2 21 1455 1474 1454 1477 0.88
44 48 7.5e-05 0.0035 17.9 1.8 2 23 1481 1503 1481 1503 0.97
45 48 2.1 96 3.9 0.6 2 23 1538 1560 1537 1560 0.94
46 48 3 1.4e+02 3.4 0.3 2 23 1596 1618 1595 1618 0.95
47 48 3.7e-05 0.0017 18.8 1.7 1 23 1621 1643 1621 1643 0.98
48 48 0.034 1.6 9.5 0.4 1 23 1652 1675 1652 1675 0.97

Sequence Information

Coding Sequence
ATGGCAGAAACATCATCAACCACAAGCCAAGACAAAACATCCAGCGACTCAGAGTCAGAAAACAACAACCTGGACACTCTAGAGGAAAAAAAGTATGAATGCTCACATTGTAACTACTCAACCGACAACTTAAACCTATACAAACAACACAAAACCAAAAACCACGCGAACAAATCCGGTTTGAAATGTCGCAAATGTCCGTACTTAGCTGCGACCAAAAAGGCCTTACGCCGTCACGTGACATTAACACACACAACGGACGAAATAGCTTTCGAGTGTCCGCTCGACGGGTGCGAATACACTGCCAAATCCGAGCGCGGCGTCGTGTATCATCTGGAAACCAGTCACAGCGGTAAAAGCTTCGATTGTTCACTATGTGATTTCAAAGGTAGTACGCATTTTGAACTAAAAAACCATACCAAAAGCGAACACGTTACGTTCGAGTGCAAGGATTGTAGTTTTGTCGGAAACGCAGCGCAATCGTTACGGTATCATAGGTTAACGCAACACACGGATAACGTATTTGTCTGTGACTTATGTGACTACGCAACAGCGGCGCAACGTAACCTCAAAAATCATAAGGAAGACCAACATGCGCCATGTTCGGAGTGCGCACAAGTGTTCGGAACCAAACGTGACTTAGCTACGCATATTGAGGCCAATCATAAAGACCAATTCATTGCCCATTTCTGTGACTTATGTGACTTCAATTCAATCGCTGAACGTAACCTAAAGGCGCATAAGCTCACCCAACACAAACCATGCGAGACATGCCATCTAGTTTTCAAATCAAGAAAGGATTTGTTCAACCATATTGAAGAAAAACACGAGGACAAGTTAATTCTATATGAGTGCGACGAGTGTGACTACAAAGCCAAACAAAAAGGCGCGTTAGTCAATCACATGGAAACTAAACACTCTGACCACGTTTACGAGTGTGACTTTTGTGACTACGCCTCACCTTCTGAACGCTTGTTAGGTGGTCACAATAAAGACCAACACTCACCTTGCGAGACATGTGGACTTGtgtttagaacaaaaaaagacCTCGCGAACCACGTGGAAAAGAACCATAAAGACAAGTACGTTCTCCATAAATGTGACTTATGTGACTTCAGCTCAATAGCTGAACGCAACTTGCGGCAACACAAGTTTAAACAACACAAAGCATGCGAGGAGTGTAACATTGTTTTCAACTCCAATAAGGACTATTTGAATCATATAGAGTCACACCACAAGGACCAGTTGGTTTTGTTTGAGTGCGAGAAGTGTGACTACAAAGCTAAGCAAAAAAGCGCGCTTGCCAATCACATGGAAACTAAACACTCGGATATGACATATGAGTGTGACTTTTGTGACTACACCTCACCATCAGAAAGGTTGTTGAATAGTCACAACAAGGACCAACACTCACCATGCGAAACGTGCTGTCTggttttcaaaactaaaaaGGATTTAGCTAGTCACCTGGAAAAAAACCATAAGGACAAGTTTGTGCTGTTCAAATGTGACTTGTGTGACTTCTCAACCATCGCAGAAAAGAATCTAAAGCAACACAAAATGACACAGCATAAATCATGCCAGGTGTGCAACATAGTCTTCCAGTCGCGCAAAGATCACCTCAACCACATTGAAGAGAGTCACAAAGATCAACTAGTGCTCTTCGAGTGCGAAAAGTGTGACTACGCAGCCAAACAAAGCGGCGCGCTTAAAGCGCACATCGAATCCAAACACTCCGACTACTTATACGAATGTGACTTCTGTGACTACACTTCGCCTTCGCAACGCAACATTAACACGCATAACAAGGACCAACACGCGCCATGTGAAACATGCTCCTTAGTTTTCCGGTCCAAACGAGACATGATAAAACATATCGAGACCAATCACAACGAGAAACTTCAAACTTATTCCTGTGACGCTTGTGACTTTACAACGCCGCGTATTGAGCGCTTGAAGTATCACAAAGATACTATTCATTCAGACGAAATGCACAGTTGCAATTTATGTGACTACACTTCACCTATTAAGCGTGGGCTTAAGTTACATATTCGTGATCAACACTCACCATGCGAGATATgttcaattgtttttaattcaaaaaaggAGTTAGTAAATCATATGGAAACGGTTCATAAAGACGAGACGTTTCTTCTACATTGTGACGTTTGTGACTACTCCTCTATAGCCGATAAGAATCTCAAGTTACACAAATATCTAATGCACAAGCCGTGTAAGAGTTGTGGACTCGTTTTCCAGACAAAAAAGGACTTATCAGTGCATTTGGAAGAAGTCCATAAAAACGAGATTGTTCTTTATGAATGCAATAAATGCGAGTACTCCTCGTACAGTCAGAAAAAGGTCAAGTATCACAAAGACACCCAACACTCCGACACAATTTTCGAGTGTGACTTCTGCGACTATACATCTCCGCTTAAAAGAAACTTGGCGAGTCATAACAAAGACCAACATGAGCCCTGCAAGTTATGCTCTTTAATATTCAGCTCAAAACGTGACTTATTACAACATATGACAAAGGAACATCGCAATAAAACACACTTCTTTTGTTGTGACGTCTGTGACTTTACATCGATATcagaaaagaatttaaaggACCACAAGAAGGGCCAACACACGCCATGCGAAATATGCTTTGAAGTGTTTTTGTCCCGCCGCGAACTGAACGAACACATGGACGAAAACCACAGCGAAAACGTCGTTTTATTCAAATGCGAACTATGTGAATACGAAGCGCGCGCCAAGCATAGAATAAAATACCACATGGACACGGTACATTCAGATAAAGAATACTCTTGTGAGCATTGCGACAAGTATAAGTCACCACTGCAACGCAATTTGGTACTCCACCAACGCGACCAACATTTACCATGCCATTTATGCGGACACATCGCGAAAAACAAAAAGGAAACACGTCGTCACTTGTGGAAGTGTAAAGACAGCAAAAAGATCAAATGCGGACTCTGTAAATTCAAGACAATGTCGCCGGATTTGTTGGCTAAACACCATGAAAAGAAACACACTATCAAAGACGAGGTAAAGCAAGAACCGCAAGAGGAAACCATGGATATAAAAGACATCAAAACTGAACTAGATGACAATGAGGATGTTTATCTTAAATGCGAAGAATGTTCGTATAGAACCAAATACGCCAAAAACATGACTACGCATCTTGATTACCACAAGCGTATGTCGCAATTCACTTGCCATGAGCCTGACTGCGAATACGCTGGGCTCTCAGCACGCGCCCTCAAAATCCATACGGCTAGACTACATCCTGATGTTACCAGACCAAAAAGCGAGCCTAAACCTGCCAAAATTGCAAAGGTTAAACAATCAACCCAGTCAAACATTGTACGTTGCAAGTTATGCTCATTCCAAACCGACACATCAAAAAGGTTGTTAAATCACGTTACAACTAGTCACGCAACGCAAAACAATGGACGCGTCTACTCATGCTTGTCCTGTTCGTATAAATCGTATTCTCAGTTCACGTACAGAAGACACGTTGAATTAAAACACTCAACAAGTCGCGTGTTTAAGTGTGAACATTGTATCTTTGAGTGTCATTTACAAGAGGAGCTTGACGAGCACTGTGATTTGAAACACGTCAAGGCTACACATCATTGCACTATTTGTCAAGTTAGGTTTACAAACAAAAGACACCTTAAAACGCATACGCAATTGAAACATAGCAAGGTCCAGTGCGGATTTTGCCAACAAAGCGTAGCTTCAATGGAGCTTTTGGTAGAGCACATGAAAAACGAGCATATGCCAAAGAACTGCGAGCATTGCGACTACAACGCGAAAAACGCGcttgatttacgaacccatATGTCGTCTATACACCCTGATATAATAATCCCAGAGCCTGAAGAAGTCAAACCAACTCCAGTACCCGAACCTAAACCCAAGAAAAAACAGAAATACAAATACGGCTGTGAGCAATGTTCGCACCGCGCTACGTGCAGCAGTATGCTTAAATACCACATTAAAACGCGCCATTCTAACCTCACTTTCGCGTGTGATGAATGCCCCTACGTCGGGAAGTTTAAAATCGAGCTGCGACATCACAAAATCAAACAACATCGCAAGTTAGAGTGCACCAAATGCGACATACAGTTTAAAGAATACAAGAAACTGTACTACCACATGCAAACCAAACATTCAGACGTAGTTTTTGAATGCGAGGACTGTGGACTTAAACTCAAGTCCAGAAATGATTTAAGAATCCATAGGACGCAGCAGCATAGAAGCTTAACTTGTGAACAGTGCAGTATAACATTTGAGACATATCCAATGCTGAAGTATCATAAGAAAACCCGCCATTCGGACCTTAGCATTAAATGTGAGAGTTGCAACTACATCGCGATTAATAAGTTTGATTTAAGAAAGCACAGCTTCAACCAGCATAGGAATAACGAATGCCCTAAGTGCAAGAAACAATTCAAGAACTATCCTATGTTAAACTACCACATGCGGACTCGACACGAATCAAGCGGTAGTTTCAACTGCGAGCATTGTAATTTCACTGCGTCATGTTCAGCCGCAATAAAAGAACACATGAAAGACGCCCATAAAGACAAAGTTCTAAACTGTGTCTACTGTAACTACAAGGCAACCTCACCGCAAATGCTCAGTTATCACAAAGACACCAAACATTCAGATAAATCAAAGCAAATATACAAATGCACTGAGTGTTCCTTCAAGTGCAAAAGCCGCACTATGTTTAAATACCACTGCAAGAAGATCCATGGCTCGGTTCAAACCTGTCGACAATGCGCATACGTTGCCAAAAGTCTATTAGACCTGCGGAAACATGTCCAATCCGAACATAACACTTTCGAGTGCCATATTTGCCAGTATAAGGCAGTATCATCAAGCGCGTTACAACGCCATATGAAAACACATCCAGATGGTGCCACTAATCAAGGTTTTATCTGTTACGAGTGTAACATAACTATAGATTCCCGTGAGGATTTCCTACGGCATATTAAAAGTCAGCACAACTCACACGCACGAAATGATTTTGAAGCTGAAGAAATGGACTGTAGTGAATACAACGTGAAGCTAGAGAACGTTAAATGCGAGTTATTAGAATGTGATCCATACGATAAAATCAAACAAGAGTGTCAAGTCAAATTAGAACGTATTAAGTGGTCCCCTACGCATAATACGTATACCACAAGTAAAGACGATTTCCTGTCCATTGTTAATGTGTTTTCTGTGAAAGACGAACCGATTGATATAACATATGATGACGATGAAGATATCGAGATTGTTAATGAACCACTTGACGCTATAAATGATCATGATAAAGAAATTCCAAACGATACTATGACTAATAATGTTACTGAACACACTAATGAATCTAGTACAACTAATGAATCAACTCAAGAAATTCTGGATAATAAAGGAACTGCAAAAGGTATTGAATCTGTTGAAGAAGGTATAACGGAATCTGTTGAAAAAGTAGCAGCAGTAGAAAATGATAAAACACCCTGTGTCGAATCTTCTGAAAAAGATCTTCTAAAAGCACCAAAAGAAATACCTATGGAGCTTGAAGAAGAAATAACCAAGACACCTACTGACGAAGTTGTTCAGAATCATAAAGTAGCTGAGATAGAATCAATAAAAGATATTTCCAaagaaataatcaataaaaacaaaactgagGAAAGTTTAAAGGAATTatctaaaaatgtttctaaaaatccTGTTGATATTATAGAGAATCATAATAAAGAAGTCTCTAGTCAATCAGTTGAAGAATCCTATACCTTATTAAATAATGCTTTAGAAGCATCTAAAGAAATCTCAATGGAAGTTGCTGAAAATAATTGTGAAAACTCTactgacaaaattattaagaatcaAACAGAAATGGATTTAGATAAAGATTCTAATAATTCTGATCTTGACAAACCTTTTAAAGATTCTAATGATGTTGCTGTAAAAGTAAGTAAAAGAGAAGATGTTGATAAAAAACCTATTGACGAAGAGGTTAttgaaaatagtttaaaagaaacttttaaagttaaagaaacAGTTAACTTTAATAAAGATGCATTAGAAGCTTCGAAAGATGTTGCTATAGTTGCAGATAATGTTTCTAAGAATACTGTGAGCGACGAAGTTTCTCAAAATGATTTAGAAGTGGCTAAAACAGTTAAAGAACccattaatttaaatcaaaatgtaACGGAAATTTCTAAAGATGTAGTAACAAGCGATAAAACTAACGACAacgttattaaaaataatactgcAGTAGTTTCAATGGAAGATGATCTTTCTAATAATTCTGTTAATGAAGaaccaacaaaaaacattaatgAAGTTTCTTTAGAAGACGATAAAAAGCAAAACGAAATCCCTAAGAATGATGTTAAAGAAATCTTAAATACAACAGCGGATAAGATTTCTACTGATCTTAATAAAACTGCTAAAGAGATTATCCAAAATTCTGTTGaaataaaaacatcaaaagatTCCAATCAAGAAAGAGTTGCCAATGATGAAAGTCCCAACTAG
Protein Sequence
MAETSSTTSQDKTSSDSESENNNLDTLEEKKYECSHCNYSTDNLNLYKQHKTKNHANKSGLKCRKCPYLAATKKALRRHVTLTHTTDEIAFECPLDGCEYTAKSERGVVYHLETSHSGKSFDCSLCDFKGSTHFELKNHTKSEHVTFECKDCSFVGNAAQSLRYHRLTQHTDNVFVCDLCDYATAAQRNLKNHKEDQHAPCSECAQVFGTKRDLATHIEANHKDQFIAHFCDLCDFNSIAERNLKAHKLTQHKPCETCHLVFKSRKDLFNHIEEKHEDKLILYECDECDYKAKQKGALVNHMETKHSDHVYECDFCDYASPSERLLGGHNKDQHSPCETCGLVFRTKKDLANHVEKNHKDKYVLHKCDLCDFSSIAERNLRQHKFKQHKACEECNIVFNSNKDYLNHIESHHKDQLVLFECEKCDYKAKQKSALANHMETKHSDMTYECDFCDYTSPSERLLNSHNKDQHSPCETCCLVFKTKKDLASHLEKNHKDKFVLFKCDLCDFSTIAEKNLKQHKMTQHKSCQVCNIVFQSRKDHLNHIEESHKDQLVLFECEKCDYAAKQSGALKAHIESKHSDYLYECDFCDYTSPSQRNINTHNKDQHAPCETCSLVFRSKRDMIKHIETNHNEKLQTYSCDACDFTTPRIERLKYHKDTIHSDEMHSCNLCDYTSPIKRGLKLHIRDQHSPCEICSIVFNSKKELVNHMETVHKDETFLLHCDVCDYSSIADKNLKLHKYLMHKPCKSCGLVFQTKKDLSVHLEEVHKNEIVLYECNKCEYSSYSQKKVKYHKDTQHSDTIFECDFCDYTSPLKRNLASHNKDQHEPCKLCSLIFSSKRDLLQHMTKEHRNKTHFFCCDVCDFTSISEKNLKDHKKGQHTPCEICFEVFLSRRELNEHMDENHSENVVLFKCELCEYEARAKHRIKYHMDTVHSDKEYSCEHCDKYKSPLQRNLVLHQRDQHLPCHLCGHIAKNKKETRRHLWKCKDSKKIKCGLCKFKTMSPDLLAKHHEKKHTIKDEVKQEPQEETMDIKDIKTELDDNEDVYLKCEECSYRTKYAKNMTTHLDYHKRMSQFTCHEPDCEYAGLSARALKIHTARLHPDVTRPKSEPKPAKIAKVKQSTQSNIVRCKLCSFQTDTSKRLLNHVTTSHATQNNGRVYSCLSCSYKSYSQFTYRRHVELKHSTSRVFKCEHCIFECHLQEELDEHCDLKHVKATHHCTICQVRFTNKRHLKTHTQLKHSKVQCGFCQQSVASMELLVEHMKNEHMPKNCEHCDYNAKNALDLRTHMSSIHPDIIIPEPEEVKPTPVPEPKPKKKQKYKYGCEQCSHRATCSSMLKYHIKTRHSNLTFACDECPYVGKFKIELRHHKIKQHRKLECTKCDIQFKEYKKLYYHMQTKHSDVVFECEDCGLKLKSRNDLRIHRTQQHRSLTCEQCSITFETYPMLKYHKKTRHSDLSIKCESCNYIAINKFDLRKHSFNQHRNNECPKCKKQFKNYPMLNYHMRTRHESSGSFNCEHCNFTASCSAAIKEHMKDAHKDKVLNCVYCNYKATSPQMLSYHKDTKHSDKSKQIYKCTECSFKCKSRTMFKYHCKKIHGSVQTCRQCAYVAKSLLDLRKHVQSEHNTFECHICQYKAVSSSALQRHMKTHPDGATNQGFICYECNITIDSREDFLRHIKSQHNSHARNDFEAEEMDCSEYNVKLENVKCELLECDPYDKIKQECQVKLERIKWSPTHNTYTTSKDDFLSIVNVFSVKDEPIDITYDDDEDIEIVNEPLDAINDHDKEIPNDTMTNNVTEHTNESSTTNESTQEILDNKGTAKGIESVEEGITESVEKVAAVENDKTPCVESSEKDLLKAPKEIPMELEEEITKTPTDEVVQNHKVAEIESIKDISKEIINKNKTEESLKELSKNVSKNPVDIIENHNKEVSSQSVEESYTLLNNALEASKEISMEVAENNCENSTDKIIKNQTEMDLDKDSNNSDLDKPFKDSNDVAVKVSKREDVDKKPIDEEVIENSLKETFKVKETVNFNKDALEASKDVAIVADNVSKNTVSDEVSQNDLEVAKTVKEPINLNQNVTEISKDVVTSDKTNDNVIKNNTAVVSMEDDLSNNSVNEEPTKNINEVSLEDDKKQNEIPKNDVKEILNTTADKISTDLNKTAKEIIQNSVEIKTSKDSNQERVANDESPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-