Cbif003066.1
Basic Information
- Insect
- Cartodere bifasciata
- Gene Symbol
- -
- Assembly
- GCA_963920755.1
- Location
- OY987194.1:2454927-2465512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00071 0.033 14.8 2.0 1 23 220 242 220 242 0.96 2 19 7.1e-05 0.0033 17.9 1.3 2 23 256 277 255 277 0.97 3 19 0.0027 0.12 13.0 0.2 4 23 281 300 281 300 0.96 4 19 1.6 73 4.3 2.8 1 23 306 328 306 328 0.93 5 19 0.03 1.4 9.7 0.9 1 23 334 356 334 356 0.96 6 19 3.1e-05 0.0014 19.1 1.4 1 23 623 645 623 645 0.97 7 19 1.7e-05 0.00078 19.9 3.3 1 23 651 673 651 673 0.98 8 19 0.0009 0.042 14.5 2.8 1 23 679 701 679 701 0.98 9 19 0.0012 0.054 14.1 5.3 1 23 707 729 707 729 0.98 10 19 1.1e-05 0.00052 20.5 0.3 1 21 867 887 867 888 0.95 11 19 0.89 41 5.1 1.2 1 23 930 952 930 952 0.95 12 19 8.9e-05 0.0041 17.6 4.3 1 23 958 980 958 980 0.98 13 19 0.073 3.4 8.5 1.7 1 23 986 1008 986 1008 0.96 14 19 9e-05 0.0042 17.6 4.2 1 23 1014 1036 1014 1036 0.96 15 19 0.0098 0.45 11.2 2.6 1 23 1042 1064 1042 1064 0.97 16 19 0.00083 0.038 14.6 2.3 1 23 1070 1092 1070 1092 0.97 17 19 0.14 6.4 7.6 3.1 1 23 1098 1120 1098 1120 0.96 18 19 0.00081 0.037 14.6 1.7 1 23 1126 1148 1126 1148 0.95 19 19 0.71 33 5.4 1.7 1 23 1154 1177 1154 1177 0.92
Sequence Information
- Coding Sequence
- ATGACTGACCTTCATGATACGTTCCAAAGTAAGGACCTCTGCAGAATATGTCTAAGCAAAAGTGACCAAATGTTACCGTTACATGAAGAGTTGGGCCCCCATACATCTATCTCGGTCCTCACTGCTTTACAATCTGTTATGGCTGTTAAGTTAAACGAATCCAAAGCATATCCCCAATCGATATGCAGGATTTGCTTGAGCTCACTTAAAATAGCCTATGATTTAAAACTACAATATCATGAGTCTGATAAGAGGATAACTAGTCTACTGAACAAAGCCATGGAAGAATTACCTGCAATAATCAAAGTGGAAAATGAAAGAGTTACCTCAGGAGATACCGTTGTCGAACTTACGGAGGGGCAAACCAAATACTTAGACTccaatattgttaaaaaaattaaagaagaaGTAAGCGAAGaagattttaatattaaacatCAAGAACTTGAGGAAAACATTGAAGTACCCGATTATGTGTCTGCAGAGGACATCTCTACATTGAGCCATGATATTAAAACAGAAACAGAGGAATGCGACTTGAGTCAAATAAAGATGGAAACCGAAGAAAGCAACTCAACATCAACAAGTACTGAACAAACTAAACATGTAACTAACAATACTCTTGAAGACGATCTTTGTGTTGAACAACCTGAACAATTTATTTGCGCCAGTTGTAATAAGAGTTTTACTTCCAAATGTAGTTTAATAATGCATATTGAGCAGCATAAAAGAGAAGAGAAGTCTAATACTGGTAAGCAGGCACTtacttgccagtactgtccatacaaaaCAAGGCAAGCAAGTTatcttaaaaaacatttgttaacacatactgggaAAAAGtactgtccatacaaaaCAACGCAAGCGGGTTATCTTAAGaaacatatgttaacacatactggggaaagggcacatgcttgccagtactgtccatacaaagCTTTGCGATTACACGACATTAAACgacatatgttaacacatactgaaGAAAAGCcccatgcttgccagtactgtccaaaCAAAGCTGCCCAAGCCATTCATCTTAAGACACATATGTTAATACATACTGGGGAAAAAACAAAAGCTTGTCCGCACTGTCCATACAAATGTGCGCAATCAATGTATGGTTTTTTGCAATTGATTAGTAAAATAAAGTGTAAAATGGATGGTTCTCAAGAAACTTTCCAAAGCAAGGACCTCTGCAGAATATGTCTAAGCAAAAGTGACCAAATGTTGGCGTTACATGAAGAGTTGGGCCCCCATACATCTATCTCGGTCCTCACTGCTTTACAATCTGTTATGGCTGTTACGTTATACCAATCCAAAGCATATCCCCAATTAATATGCAGCATTTGCTTGAGCTCACTTAGAATAGCCTATGATTTACAACAACAATATCATGAGTCTGATAAGAGGATAACTAGTCTACTGAACAAAGCCATGGAAGAATTACCTGCAATAATCAAAGTGGAAAATGAAAGAGTTACCTCAGGAGATACCGTTGTCGAACTTACGGAGGGACAAACCAAATACTTAGACTCCAATATTGTTATAAAAGACGAAAAGGAAATTAGCGACTTTAAATATGATTTAAGTAATCATGTCAGCAGCAAATCAGCTTGCGAAgagcatttaaatattaagctGGAACTTGAAGAAAGCATTCAAGTACCCGATGATGTGTCTGCAGAGGACATCTCTACATTGAGCCATgacattaaaacaaaaaataaagaatgtgATTTGAGccaaataaaaatggaaaccGAAGAAAGCAACTCAAAATCAACAAGTAGTGAACAAACTAAACATGTAACTAACAATACTCTTGAAGACGATCTTTGTGTTGAACAACCTGAACAATTTATTTGCGCCAGTTGTGATAAGAGTTTTACTTCCAAATACCGTTTAATACGACATATTAAGCAACATAGAATGGTAAAGAAGTTTATCTGTTCACTTTGTCACGAGAATTTCAagtcaaaatattatttaaaagcacatatgttaacacatactggggaaAAGCCATATagttgccagtactgtccatacaaagCTACGCAAGCGCGTCATCTTAAAGAACATATGTTCACACATACTGGGGAAAAACCACATgtttgccagtactgtccatacaaaaCTACGCAAGCCCATCATCTTAAAGAACATATattaacacatactggggaaAAACCACATAGTTGCCAGTTATGTGATTATAAAGGCACCCAAGCCAAAGATACAACCCAAACCAAGGATCCCCACAGAATATCTCTTAGCAAAAGTGACCAAATGTTGCCGTTAAATAATGAGTTGGGCCTCCCAACATCTCTAATCAATATTAAAGAAGAAATAAGCGAAGAATACATTAAACAGGAACCTGAGGAAAACATTGAAATACCTAATGATGTGTCTGCAGAGGACATCTCTACATTGAGCCATGATATTAAGATAGAAATAGAGGAATGTGACTTGAGCCAAATAAAGATGGAAACCGAAGAAAGCAACTTAACATCAACAAGTAGTGAACAAACTAAACATGTAACTAACAATACTCTTGAAGACGATCTTTGTGTTGAACAACCTGAACAATTTATTTGCGCCATTTGTAATAAGAGTTTTACTTCCAAATACAGTTTAATACAACATATTAAGCAAAAAGGAAAAAGAAGAAAGTCTAATACTGGTGAGAAGTTGCATGCTTTCCAGTACTGTCCATTCAAAGCTTTGCGATTAAATGACCTTAAGAGACACACATTAATACATACTGGGGAAAAGcgacatgcttgccagtactgtccatacatATCTTTGCGATTAAATGACATTAAGAGGCATATGTCAACACATACTGTGGAAAAGACACATAAATGCCAATACTGTCCATTCAAAACAACACAAGCTAGTTATCTTAAGaaacatatgttaacacatactggggagaaaacacatgcttgccagtactgtccatacacATCATTGCGATTAAGTGACATTAAGAGACATATGTCAACACATACTGGGGAGAAgccacatgcttgccagtactgtccatacacGACAAATGAcaaacacaatttaaaaagacaTATTTTAACACATTCTGACGAAAAACCCCAttcttgccagtactgtccatacaaagCCAGACACCTGAATGGTCTACAGAtacatatgttaacacatactggggagAAGCCACATgtttgccagtactgtccatacaaaaGTAGGACAGCCGGTCATCTTAAAGTacatgttttaacacatactggggaaAAGCCACAttcttgccagtactgtccatttAAAGCTCGCTCAACAAGTGAACTTAAAGTACATACTTTTAGACATACTGGGGAGAAgccacatgcttgccagtactgtccatacaaatCTAGGACAGGGAGTAATCTTAAGAAACATATGTTAGGGCATACTGCAGAAATgccacatgcttgccagtactgttcGTACAAGGCTAAAGCAGCTGGTCATTTGAAAAATCATGTTTTGTTAACACATACTACTGGCAAGTAG
- Protein Sequence
- MTDLHDTFQSKDLCRICLSKSDQMLPLHEELGPHTSISVLTALQSVMAVKLNESKAYPQSICRICLSSLKIAYDLKLQYHESDKRITSLLNKAMEELPAIIKVENERVTSGDTVVELTEGQTKYLDSNIVKKIKEEVSEEDFNIKHQELEENIEVPDYVSAEDISTLSHDIKTETEECDLSQIKMETEESNSTSTSTEQTKHVTNNTLEDDLCVEQPEQFICASCNKSFTSKCSLIMHIEQHKREEKSNTGKQALTCQYCPYKTRQASYLKKHLLTHTGKKYCPYKTTQAGYLKKHMLTHTGERAHACQYCPYKALRLHDIKRHMLTHTEEKPHACQYCPNKAAQAIHLKTHMLIHTGEKTKACPHCPYKCAQSMYGFLQLISKIKCKMDGSQETFQSKDLCRICLSKSDQMLALHEELGPHTSISVLTALQSVMAVTLYQSKAYPQLICSICLSSLRIAYDLQQQYHESDKRITSLLNKAMEELPAIIKVENERVTSGDTVVELTEGQTKYLDSNIVIKDEKEISDFKYDLSNHVSSKSACEEHLNIKLELEESIQVPDDVSAEDISTLSHDIKTKNKECDLSQIKMETEESNSKSTSSEQTKHVTNNTLEDDLCVEQPEQFICASCDKSFTSKYRLIRHIKQHRMVKKFICSLCHENFKSKYYLKAHMLTHTGEKPYSCQYCPYKATQARHLKEHMFTHTGEKPHVCQYCPYKTTQAHHLKEHILTHTGEKPHSCQLCDYKGTQAKDTTQTKDPHRISLSKSDQMLPLNNELGLPTSLINIKEEISEEYIKQEPEENIEIPNDVSAEDISTLSHDIKIEIEECDLSQIKMETEESNLTSTSSEQTKHVTNNTLEDDLCVEQPEQFICAICNKSFTSKYSLIQHIKQKGKRRKSNTGEKLHAFQYCPFKALRLNDLKRHTLIHTGEKRHACQYCPYISLRLNDIKRHMSTHTVEKTHKCQYCPFKTTQASYLKKHMLTHTGEKTHACQYCPYTSLRLSDIKRHMSTHTGEKPHACQYCPYTTNDKHNLKRHILTHSDEKPHSCQYCPYKARHLNGLQIHMLTHTGEKPHVCQYCPYKSRTAGHLKVHVLTHTGEKPHSCQYCPFKARSTSELKVHTFRHTGEKPHACQYCPYKSRTGSNLKKHMLGHTAEMPHACQYCSYKAKAAGHLKNHVLLTHTTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -