Basic Information

Insect: Cartodere bifasciata
Gene Symbol: -
Assembly: GCA_963920755.1
Location: OY987196.1:6283980-6288667[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00039 0.018 15.6 7.0 1 23 257 279 257 279 0.97

2 16 4.8e-06 0.00022 21.6 0.4 1 23 282 305 282 305 0.98

3 16 0.0037 0.17 12.5 9.0 1 23 311 333 311 333 0.97

4 16 4.6 2.1e+02 2.8 0.0 3 22 342 361 340 361 0.92

5 16 0.00035 0.016 15.8 0.1 1 23 525 548 525 548 0.96

6 16 0.0012 0.055 14.1 0.6 1 20 554 573 554 575 0.95

7 16 0.1 4.7 8.0 1.5 1 23 582 605 582 605 0.95

8 16 1.9e-05 0.00086 19.8 0.6 1 23 628 651 628 651 0.97

9 16 0.29 14 6.6 1.5 3 23 691 712 689 712 0.93

10 16 2.5e-06 0.00011 22.5 0.3 1 23 731 753 731 753 0.98

11 16 5.9e-05 0.0027 18.2 0.6 1 23 756 779 756 779 0.91

12 16 0.026 1.2 9.9 2.1 2 23 785 806 785 807 0.95

13 16 0.05 2.3 9.0 0.1 2 23 814 835 813 835 0.72

14 16 0.00013 0.006 17.1 0.1 2 23 842 863 841 863 0.96

15 16 0.044 2 9.2 0.4 1 23 871 894 871 894 0.96

16 16 0.00023 0.011 16.4 1.4 3 23 901 921 899 921 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00039	0.018	15.6	7.0	1	23	257	279	257	279	0.97
2	16	4.8e-06	0.00022	21.6	0.4	1	23	282	305	282	305	0.98
3	16	0.0037	0.17	12.5	9.0	1	23	311	333	311	333	0.97
4	16	4.6	2.1e+02	2.8	0.0	3	22	342	361	340	361	0.92
5	16	0.00035	0.016	15.8	0.1	1	23	525	548	525	548	0.96
6	16	0.0012	0.055	14.1	0.6	1	20	554	573	554	575	0.95
7	16	0.1	4.7	8.0	1.5	1	23	582	605	582	605	0.95
8	16	1.9e-05	0.00086	19.8	0.6	1	23	628	651	628	651	0.97
9	16	0.29	14	6.6	1.5	3	23	691	712	689	712	0.93
10	16	2.5e-06	0.00011	22.5	0.3	1	23	731	753	731	753	0.98
11	16	5.9e-05	0.0027	18.2	0.6	1	23	756	779	756	779	0.91
12	16	0.026	1.2	9.9	2.1	2	23	785	806	785	807	0.95
13	16	0.05	2.3	9.0	0.1	2	23	814	835	813	835	0.72
14	16	0.00013	0.006	17.1	0.1	2	23	842	863	841	863	0.96
15	16	0.044	2	9.2	0.4	1	23	871	894	871	894	0.96
16	16	0.00023	0.011	16.4	1.4	3	23	901	921	899	921	0.96

Sequence Information

Coding Sequence: atggacTATGAAAAGCGTTGTAGGGCTTGCCTTATTTTTGACGAGAAAATGCTACCAATTTACTGCAAAAGCGAAGTCAGTGAGTTCGTTTTAAGCGAAATTTTAAACACTTGGCCCGagttaaagCTAAAAGAAGATGATGTATTTCCTAAGGTTTTGTGTACAGAATGTGCAAATATGGCTTTCCAATTTGTTAAATTAGTCAAAATGATGATTCGGAGTGAGGAGTACTTAAGTTCGCtacttaattttaagaatgatATTCACAAAGAAATCGTACAAAGAAACAACAATGTGTTTGACGATTATAAGGCAaaccaaaaaagaaataatacaAATGATGTCTACTCTTCAGAAaatggtattttaaaaatcaaggAAATCGTTAAAAAGAACGAGTTATTAGAAATAAAGACAGATCCTACGaatgttaaaacaaaaggCGTGGTTATCGATAAGCATAGCTCTTCTGTTAAAAGTGGCCCAGGTAAACGTGTTGATTCTTTGAATAAGAATTTAACTGATGACAGTAATTTATATGATTCAATCAATAATGAAAAAACTGTTGATTCTGATGAAAGTAGTAAAAATATTGAGTCTAATGAAAATGTAACACTAAATCAAAAAAAGGAAACCATTAAACTTATGTGCATTCTTTGTCACCATGtggttaaaaatttacaaattttaaggcGACATTATGATAGAAAACATCCTGACGaacaacatttaaaatatcttaaaactCTTGTTGAGGATTTGGATCAGCACAGTTGTTCTCATTGCAACCAAGATTTTGCCGACAAAAAACATCTCCAAGCCCaccttaaaaaacacaaacgCTTCAAATGCGATTTATGTGGGACCGGTTTCACTCGCAAATACGACTTAAATGGTCATATTTCAACTGTACATAACCTTGAAGCTAAGCATCATTGTCATGTTTGTAATAAAGATTTCAAAGGGCGTTCATCATTTGCACGTCATCGAAGAAAGCACATGGAAGGTGAAAAACACATAATATGCGATATTTGTATAAAACCAATGAGCTCACGATATGCCCTAAACATTCACGTTAAAACTTTAAGTGAAGAAGATGATTTTCCAAAAGTTTTATGCAGCAACTGCGCTGTTATGGTGCTTCAATTTGTAAAACTAACAGAAATGATTGCACGAAGCGATGAGTACCTAAGTTCAGTACGCAGTTTTAAGGCTGATGCTCATGTTTTTGTCAAACAGGAGCTACCCGCACCTGCTATAAAATTAGACGAGGATTCTGATGACTTTGAAGACTACATTAATGATACGTCTGTAGACCATAACGATTCAAAAGAGAACGTCCTTGAAAACTCGATTACTCTAGAAGCCGTTGATGCAGttgagttaaaaaaagagaatacAGGAGAAAGCACCGATTATGATTATACCCGCGATGCAACGTGGGCCCTTGATGTAAACCTTCACACCGGACTGGTTCAAGTAGCATCAGAATCGCCGTTAAGCCCTAGCACGAAGCAAGAAGTGAAAAGACAGATTGGGAGACTCGAGAAACGATTAGACCCTACACGAAAGTTTTCATGCGATGAATGTACCGCTGCATTTAGAAAACAAGGCGACTTACAAGACCATATATACAGTGTACACCTGAATTTATACCGATACCAATGCAATAAGTGCGAAGCCAAATACAAAAATCGAGGGCAACTCAGTAAACACAGGATTTTGTGCGACAATCCCGATAGTTATAAATGTTCTGCGTGCTTTAAATTGTTCGCGACTACGGAAGAGTATGAAAGACATTACGTTAGAAAGCACGTTAAAGAACCCACTAAAAATGAGGATGAGAAAGTAGATGAGGATAAACCTACGTGTACAGTCGCATATAAATGTGATATTTGCGGGGCACAGTTTAAAACGAAAAAACCGTTAGAAACCCATATGATAAAAAAACACGATGGTTTAGTGGACGAAAAACCTTCAGAAGTCCTAAACGAAAGCCACATTCCAGTTGCATCAGAACAAACCGTAACGAGTAATAATACTGAACCGCAGCTAAAAACCAAACTCATCTGCCTAAATTGCAACGGCGTCTTTGCCAGTACCgccagttttaaaaaacaccaCGACAGAAAACATTCTAACATACCAGAGGCCAGATTCACAAAAACTCTTATGGTTGAACCCACAGAATTCCCCTGCGAATACTGCAAGGAGATATTCGAGACTCAAGTACAACTAAGGGCGCATCTTAGAACGCATAAACGTTTCGTCTGTGATCATTGCGGTCATGCCTTTAAACGCGTATCCGATTTGAAAGACCACGTCGCTGGAGTTCACCTAAGTCTAACGAACACCTGCGATATTTGTGGGTTCCAAATCAAAAGCCGGTCGGGCATGGTACGTCACAAAAGGTCGCACCACAATCCACCAGAGAAAACACCGTGCGAGATCTGTGGCAAACCTCTAGTGAAGGAATCCCTCGCGCTGCACCACCGGATAGTGCATCTCAAGGAACGGAACTGGATGTGCCCCATTTGCGGAATGGCGTTCTCTTTGCGACAAAGCCTTAACAAACACGTAGCGCGTCACAACAAGGCGCGTCCCCGCTCATTTGAGTGCGATATCTGCAGTTTAACGTTTTTGGACAAAACTACGATGGTCAGGCATGTCCAAGTCAAGCATTTTCACAAGCGAGTCCACTGCAATTTGTGTAACAGAGGGTACACTACAAGCGTTGGTCTCAAGAAGCATATGGAATCGCATGCGCGTGGTAAAGTACGTGTGCGTAATGTGTATGGTATGGCTACAGTAAAGAAAAGTGATGATTCCATGTCGGAAGAAGAACAGGAGCAAGAATACGAGATGCCTTCCGAGGACGAACAACAACCAGAAACTCAGaattataagaaaataaaagtcgAAAATGCACGGCACCATCAATCGTACTATCAAGGCGAATCCAATGAGTAG
Protein Sequence: MDYEKRCRACLIFDEKMLPIYCKSEVSEFVLSEILNTWPELKLKEDDVFPKVLCTECANMAFQFVKLVKMMIRSEEYLSSLLNFKNDIHKEIVQRNNNVFDDYKANQKRNNTNDVYSSENGILKIKEIVKKNELLEIKTDPTNVKTKGVVIDKHSSSVKSGPGKRVDSLNKNLTDDSNLYDSINNEKTVDSDESSKNIESNENVTLNQKKETIKLMCILCHHVVKNLQILRRHYDRKHPDEQHLKYLKTLVEDLDQHSCSHCNQDFADKKHLQAHLKKHKRFKCDLCGTGFTRKYDLNGHISTVHNLEAKHHCHVCNKDFKGRSSFARHRRKHMEGEKHIICDICIKPMSSRYALNIHVKTLSEEDDFPKVLCSNCAVMVLQFVKLTEMIARSDEYLSSVRSFKADAHVFVKQELPAPAIKLDEDSDDFEDYINDTSVDHNDSKENVLENSITLEAVDAVELKKENTGESTDYDYTRDATWALDVNLHTGLVQVASESPLSPSTKQEVKRQIGRLEKRLDPTRKFSCDECTAAFRKQGDLQDHIYSVHLNLYRYQCNKCEAKYKNRGQLSKHRILCDNPDSYKCSACFKLFATTEEYERHYVRKHVKEPTKNEDEKVDEDKPTCTVAYKCDICGAQFKTKKPLETHMIKKHDGLVDEKPSEVLNESHIPVASEQTVTSNNTEPQLKTKLICLNCNGVFASTASFKKHHDRKHSNIPEARFTKTLMVEPTEFPCEYCKEIFETQVQLRAHLRTHKRFVCDHCGHAFKRVSDLKDHVAGVHLSLTNTCDICGFQIKSRSGMVRHKRSHHNPPEKTPCEICGKPLVKESLALHHRIVHLKERNWMCPICGMAFSLRQSLNKHVARHNKARPRSFECDICSLTFLDKTTMVRHVQVKHFHKRVHCNLCNRGYTTSVGLKKHMESHARGKVRVRNVYGMATVKKSDDSMSEEEQEQEYEMPSEDEQQPETQNYKKIKVENARHHQSYYQGESNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -